data_5C5N # _model_server_result.job_id 42EpB15h9jPoszf8Z2hz7Q _model_server_result.datetime_utc '2025-01-07 14:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5C5N # _exptl.entry_id 5C5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-3-(1H-imidazol-5-yl)-2-({[(3R,4aS,8aR)-2-(N-phenyl-beta-alanyl)decahydroisoquinolin-3-yl]methyl}amino)propanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.35 _cell.angle_gamma 90 _cell.entry_id 5C5N _cell.length_a 107.801 _cell.length_b 82.091 _cell.length_c 53.266 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id SLH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SLH _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.702 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H35 N5 O2' _chem_comp.formula_weight 437.578 _chem_comp.id SLH _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-3-(1H-imidazol-5-yl)-2-({[(3R,4aS,8aR)-2-(N-phenyl-beta-alanyl)decahydroisoquinolin-3-yl]methyl}amino)propanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 SLH doub 290 n y C22 C23 SLH sing 291 n y C21 C20 SLH sing 292 n y C23 C24 SLH doub 293 n y C20 C19 SLH doub 294 n y C24 C19 SLH sing 295 n y C19 N4 SLH sing 296 n n N4 C18 SLH sing 297 n n C18 C17 SLH sing 298 n n N2 C14 SLH sing 299 n y N2 C15 SLH doub 300 n y C14 C13 SLH doub 301 n y O C SLH doub 302 n n C17 C SLH sing 303 n n C15 N3 SLH sing 304 n y C N SLH sing 305 n n O1 C16 SLH doub 306 n n C13 N3 SLH sing 307 n y C13 C12 SLH sing 308 n n C11 C16 SLH sing 309 n n C11 N1 SLH sing 310 n n C11 C12 SLH sing 311 n n N1 C10 SLH sing 312 n n N C9 SLH sing 313 n n N C1 SLH sing 314 n n C10 C9 SLH sing 315 n n C9 C8 SLH sing 316 n n C1 C2 SLH sing 317 n n C8 C7 SLH sing 318 n n C2 C7 SLH sing 319 n n C2 C3 SLH sing 320 n n C7 C6 SLH sing 321 n n C3 C4 SLH sing 322 n n C6 C5 SLH sing 323 n n C4 C5 SLH sing 324 n n C1 H1 SLH sing 325 n n C1 H2 SLH sing 326 n n C2 H3 SLH sing 327 n n C3 H4 SLH sing 328 n n C3 H5 SLH sing 329 n n N4 H6 SLH sing 330 n n C5 H7 SLH sing 331 n n C5 H8 SLH sing 332 n n C6 H9 SLH sing 333 n n C6 H10 SLH sing 334 n n C9 H11 SLH sing 335 n n C11 H12 SLH sing 336 n n C14 H13 SLH sing 337 n n C15 H14 SLH sing 338 n n C16 H15 SLH sing 339 n n C12 H16 SLH sing 340 n n C12 H17 SLH sing 341 n n N3 H18 SLH sing 342 n n N1 H20 SLH sing 343 n n C10 H22 SLH sing 344 n n C10 H23 SLH sing 345 n n C8 H24 SLH sing 346 n n C8 H25 SLH sing 347 n n C7 H26 SLH sing 348 n n C4 H27 SLH sing 349 n n C4 H28 SLH sing 350 n n C17 H29 SLH sing 351 n n C17 H30 SLH sing 352 n n C18 H31 SLH sing 353 n n C18 H32 SLH sing 354 n n C24 H33 SLH sing 355 n n C23 H34 SLH sing 356 n n C22 H35 SLH sing 357 n n C21 H36 SLH sing 358 n n C20 H37 SLH sing 359 n n # _atom_sites.entry_id 5C5N _atom_sites.fract_transf_matrix[1][1] 0.009276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SLH A 1 401 1 SLH SLA . C 3 HOH A 1 501 32 HOH HOH . C 3 HOH A 2 502 27 HOH HOH . C 3 HOH A 3 503 65 HOH HOH . C 3 HOH A 4 504 7 HOH HOH . C 3 HOH A 5 505 49 HOH HOH . C 3 HOH A 6 506 37 HOH HOH . C 3 HOH A 7 507 38 HOH HOH . C 3 HOH A 8 508 68 HOH HOH . C 3 HOH A 9 509 62 HOH HOH . C 3 HOH A 10 510 48 HOH HOH . C 3 HOH A 11 511 23 HOH HOH . C 3 HOH A 12 512 35 HOH HOH . C 3 HOH A 13 513 51 HOH HOH . C 3 HOH A 14 514 26 HOH HOH . C 3 HOH A 15 515 34 HOH HOH . C 3 HOH A 16 516 53 HOH HOH . C 3 HOH A 17 517 56 HOH HOH . C 3 HOH A 18 518 54 HOH HOH . C 3 HOH A 19 519 57 HOH HOH . C 3 HOH A 20 520 78 HOH HOH . C 3 HOH A 21 521 20 HOH HOH . C 3 HOH A 22 522 39 HOH HOH . C 3 HOH A 23 523 83 HOH HOH . C 3 HOH A 24 524 14 HOH HOH . C 3 HOH A 25 525 42 HOH HOH . C 3 HOH A 26 526 43 HOH HOH . C 3 HOH A 27 527 6 HOH HOH . C 3 HOH A 28 528 70 HOH HOH . C 3 HOH A 29 529 80 HOH HOH . C 3 HOH A 30 530 87 HOH HOH . C 3 HOH A 31 531 10 HOH HOH . C 3 HOH A 32 532 45 HOH HOH . C 3 HOH A 33 533 17 HOH HOH . C 3 HOH A 34 534 28 HOH HOH . C 3 HOH A 35 535 40 HOH HOH . C 3 HOH A 36 536 67 HOH HOH . C 3 HOH A 37 537 41 HOH HOH . C 3 HOH A 38 538 8 HOH HOH . C 3 HOH A 39 539 63 HOH HOH . C 3 HOH A 40 540 24 HOH HOH . C 3 HOH A 41 541 22 HOH HOH . C 3 HOH A 42 542 84 HOH HOH . C 3 HOH A 43 543 16 HOH HOH . C 3 HOH A 44 544 18 HOH HOH . C 3 HOH A 45 545 86 HOH HOH . C 3 HOH A 46 546 74 HOH HOH . C 3 HOH A 47 547 15 HOH HOH . C 3 HOH A 48 548 52 HOH HOH . C 3 HOH A 49 549 11 HOH HOH . C 3 HOH A 50 550 21 HOH HOH . C 3 HOH A 51 551 58 HOH HOH . C 3 HOH A 52 552 29 HOH HOH . C 3 HOH A 53 553 19 HOH HOH . C 3 HOH A 54 554 76 HOH HOH . C 3 HOH A 55 555 30 HOH HOH . C 3 HOH A 56 556 36 HOH HOH . C 3 HOH A 57 557 31 HOH HOH . C 3 HOH A 58 558 3 HOH HOH . C 3 HOH A 59 559 12 HOH HOH . C 3 HOH A 60 560 46 HOH HOH . C 3 HOH A 61 561 55 HOH HOH . C 3 HOH A 62 562 47 HOH HOH . C 3 HOH A 63 563 25 HOH HOH . C 3 HOH A 64 564 60 HOH HOH . C 3 HOH A 65 565 64 HOH HOH . C 3 HOH A 66 566 9 HOH HOH . C 3 HOH A 67 567 77 HOH HOH . C 3 HOH A 68 568 72 HOH HOH . C 3 HOH A 69 569 44 HOH HOH . C 3 HOH A 70 570 79 HOH HOH . C 3 HOH A 71 571 85 HOH HOH . C 3 HOH A 72 572 5 HOH HOH . C 3 HOH A 73 573 1 HOH HOH . C 3 HOH A 74 574 73 HOH HOH . C 3 HOH A 75 575 2 HOH HOH . C 3 HOH A 76 576 13 HOH HOH . C 3 HOH A 77 577 4 HOH HOH . C 3 HOH A 78 578 88 HOH HOH . C 3 HOH A 79 579 33 HOH HOH . C 3 HOH A 80 580 91 HOH HOH . C 3 HOH A 81 581 96 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 97 HOH HOH . C 3 HOH A 84 584 95 HOH HOH . C 3 HOH A 85 585 59 HOH HOH . C 3 HOH A 86 586 93 HOH HOH . C 3 HOH A 87 587 94 HOH HOH . C 3 HOH A 88 588 90 HOH HOH . C 3 HOH A 89 589 69 HOH HOH . C 3 HOH A 90 590 89 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 75 HOH HOH . C 3 HOH A 93 593 50 HOH HOH . C 3 HOH A 94 594 81 HOH HOH . C 3 HOH A 95 595 66 HOH HOH . C 3 HOH A 96 596 71 HOH HOH . C 3 HOH A 97 597 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SLH . . . B 2 -26.041 -40.481 3.747 1 20 ? C1 SLH 401 A 1 HETATM 2 C C2 SLH . . . B 2 -26.28 -40.958 5.137 1 20 ? C2 SLH 401 A 1 HETATM 3 C C3 SLH . . . B 2 -26.385 -39.751 6.014 1 20 ? C3 SLH 401 A 1 HETATM 4 N N4 SLH . . . B 2 -27.746 -39.681 -1.262 1 20 ? N4 SLH 401 A 1 HETATM 5 C C5 SLH . . . B 2 -25.448 -41.123 7.923 1 20 ? C5 SLH 401 A 1 HETATM 6 C C6 SLH . . . B 2 -25.498 -42.286 6.974 1 20 ? C6 SLH 401 A 1 HETATM 7 C C9 SLH . . . B 2 -24.979 -42.68 3.227 1 20 ? C9 SLH 401 A 1 HETATM 8 C C11 SLH . . . B 2 -21.363 -42.989 2.024 1 20 ? C11 SLH 401 A 1 HETATM 9 C C13 SLH . . . B 2 -19.957 -40.87 1.819 1 20 ? C13 SLH 401 A 1 HETATM 10 C C14 SLH . . . B 2 -20.181 -40.504 0.532 1 20 ? C14 SLH 401 A 1 HETATM 11 C C15 SLH . . . B 2 -18.396 -39.517 1.182 1 20 ? C15 SLH 401 A 1 HETATM 12 O O1 SLH . . . B 2 -20.65 -45.129 1.6 1 20 ? O1 SLH 401 A 1 HETATM 13 C C16 SLH . . . B 2 -20.415 -44.139 2.241 1 20 ? C16 SLH 401 A 1 HETATM 14 C C12 SLH . . . B 2 -20.775 -41.76 2.694 1 20 ? C12 SLH 401 A 1 HETATM 15 N N3 SLH . . . B 2 -18.86 -40.236 2.194 1 20 ? N3 SLH 401 A 1 HETATM 16 N N2 SLH . . . B 2 -19.211 -39.67 0.156 1 20 ? N2 SLH 401 A 1 HETATM 17 N N1 SLH . . . B 2 -22.655 -43.401 2.621 1 20 ? N1 SLH 401 A 1 HETATM 18 C C10 SLH . . . B 2 -23.568 -42.281 2.864 1 20 ? C10 SLH 401 A 1 HETATM 19 C C8 SLH . . . B 2 -25.129 -43.008 4.7 1 20 ? C8 SLH 401 A 1 HETATM 20 C C7 SLH . . . B 2 -25.157 -41.817 5.593 1 20 ? C7 SLH 401 A 1 HETATM 21 C C4 SLH . . . B 2 -26.425 -40.044 7.496 1 20 ? C4 SLH 401 A 1 HETATM 22 N N SLH . . . B 2 -25.776 -41.54 2.798 1 20 ? N SLH 401 A 1 HETATM 23 C C SLH . . . B 2 -26.166 -41.486 1.527 1 20 ? C SLH 401 A 1 HETATM 24 O O SLH . . . B 2 -25.934 -42.344 0.731 1 20 ? O SLH 401 A 1 HETATM 25 C C17 SLH . . . B 2 -26.92 -40.258 1.041 1 20 ? C17 SLH 401 A 1 HETATM 26 C C18 SLH . . . B 2 -26.611 -40 -0.428 1 20 ? C18 SLH 401 A 1 HETATM 27 C C19 SLH . . . B 2 -28.102 -40.465 -2.319 1 20 ? C19 SLH 401 A 1 HETATM 28 C C24 SLH . . . B 2 -27.414 -41.644 -2.624 1 20 ? C24 SLH 401 A 1 HETATM 29 C C23 SLH . . . B 2 -27.817 -42.42 -3.707 1 20 ? C23 SLH 401 A 1 HETATM 30 C C22 SLH . . . B 2 -28.902 -42.028 -4.482 1 20 ? C22 SLH 401 A 1 HETATM 31 C C21 SLH . . . B 2 -29.592 -40.862 -4.191 1 20 ? C21 SLH 401 A 1 HETATM 32 C C20 SLH . . . B 2 -29.179 -40.1 -3.113 1 20 ? C20 SLH 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #