data_5C65
#
_model_server_result.job_id            f9m94KvrIf7tJczdRIzb9g 
_model_server_result.datetime_utc      '2024-11-27 18:12:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5C65 
#
_exptl.entry_id    5C65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.695 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Octyl Glucose Neopentyl Glycol' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.91 
_cell.angle_gamma         90 
_cell.entry_id            5C65 
_cell.length_a            63.55 
_cell.length_b            116.03 
_cell.length_c            99.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C27 H52 O12' 
_chem_comp.formula_weight    568.695 
_chem_comp.id                37X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Octyl Glucose Neopentyl Glycol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 37X sing 1 n n 
O3 C3 37X sing 2 n n 
C3 C4 37X sing 3 n n 
C3 C2 37X sing 4 n n 
C4 C5 37X sing 5 n n 
O6 C6 37X sing 6 n n 
O2 C2 37X sing 7 n n 
C5 C6 37X sing 8 n n 
C5 O5 37X sing 9 n n 
C2 C1 37X sing 10 n n 
CBC CBE 37X sing 11 n n 
CBE CBG 37X sing 12 n n 
C1 O5 37X sing 13 n n 
C1 O1 37X sing 14 n n 
CBG CBI 37X sing 15 n n 
O1 CBS 37X sing 16 n n 
CBI CBK 37X sing 17 n n 
CBS CCM 37X sing 18 n n 
CBK CBQ 37X sing 19 n n 
CBQ CCM 37X sing 20 n n 
CCM CBT 37X sing 21 n n 
CCM CBR 37X sing 22 n n 
CBT OBV 37X sing 23 n n 
CBR CBL 37X sing 24 n n 
OBV CCJ 37X sing 25 n n 
OAP CCL 37X sing 26 n n 
CCL CCJ 37X sing 27 n n 
CCL CCH 37X sing 28 n n 
OAN CCH 37X sing 29 n n 
CCJ OBX 37X sing 30 n n 
CBL CBJ 37X sing 31 n n 
OBX CCF 37X sing 32 n n 
CCH CCQ 37X sing 33 n n 
CCQ CCF 37X sing 34 n n 
CCQ OCB 37X sing 35 n n 
CBJ CBH 37X sing 36 n n 
CCF CBP 37X sing 37 n n 
CBP OAL 37X sing 38 n n 
CBH CBF 37X sing 39 n n 
CBF CBD 37X sing 40 n n 
OAL H1 37X sing 41 n n 
OAN H2 37X sing 42 n n 
C1 H3 37X sing 43 n n 
C2 H4 37X sing 44 n n 
O2 H5 37X sing 45 n n 
C3 H6 37X sing 46 n n 
O3 H7 37X sing 47 n n 
C4 H8 37X sing 48 n n 
O4 H9 37X sing 49 n n 
C5 H10 37X sing 50 n n 
C6 H11 37X sing 51 n n 
C6 H12 37X sing 52 n n 
O6 H13 37X sing 53 n n 
OAP H14 37X sing 54 n n 
CBC H15 37X sing 55 n n 
CBC H16 37X sing 56 n n 
CBC H17 37X sing 57 n n 
CBD H18 37X sing 58 n n 
CBD H19 37X sing 59 n n 
CBD H20 37X sing 60 n n 
CBE H21 37X sing 61 n n 
CBE H22 37X sing 62 n n 
CBF H23 37X sing 63 n n 
CBF H24 37X sing 64 n n 
CBG H25 37X sing 65 n n 
CBG H26 37X sing 66 n n 
CBH H27 37X sing 67 n n 
CBH H28 37X sing 68 n n 
CBI H29 37X sing 69 n n 
CBI H30 37X sing 70 n n 
CBJ H31 37X sing 71 n n 
CBJ H32 37X sing 72 n n 
CBK H33 37X sing 73 n n 
CBK H34 37X sing 74 n n 
CBL H35 37X sing 75 n n 
CBL H36 37X sing 76 n n 
CBP H37 37X sing 77 n n 
CBP H38 37X sing 78 n n 
CBQ H39 37X sing 79 n n 
CBQ H40 37X sing 80 n n 
CBR H41 37X sing 81 n n 
CBR H42 37X sing 82 n n 
CBS H43 37X sing 83 n n 
CBS H44 37X sing 84 n n 
CBT H45 37X sing 85 n n 
CBT H46 37X sing 86 n n 
OCB H47 37X sing 87 n n 
CCF H48 37X sing 88 n n 
CCH H49 37X sing 89 n n 
CCJ H50 37X sing 90 n n 
CCL H51 37X sing 91 n n 
CCQ H52 37X sing 92 n n 
#
_atom_sites.entry_id                     5C65 
_atom_sites.fract_transf_matrix[1][1]    0.015736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 37X A 1 501 1 37X 37X . 
D 2 37X A 1 502 2 37X 37X . 
E 2 37X A 1 503 4 37X 37X . 
F 2 37X A 1 504 5 37X 37X . 
G 2 37X A 1 505 7 37X 37X . 
H 2 37X A 1 506 8 37X 37X . 
I 3 Y01 A 1 507 1 Y01 Y01 . 
J 2 37X B 1 501 3 37X 37X . 
K 2 37X B 1 502 6 37X 37X . 
L 2 37X B 1 503 9 37X 37X . 
M 3 Y01 B 1 504 2 Y01 Y01 . 
N 4 HOH A 1 601 30 HOH HOH . 
N 4 HOH A 2 602 7 HOH HOH . 
N 4 HOH A 3 603 1 HOH HOH . 
N 4 HOH A 4 604 9 HOH HOH . 
N 4 HOH A 5 605 16 HOH HOH . 
N 4 HOH A 6 606 21 HOH HOH . 
N 4 HOH A 7 607 12 HOH HOH . 
N 4 HOH A 8 608 19 HOH HOH . 
N 4 HOH A 9 609 20 HOH HOH . 
N 4 HOH A 10 610 15 HOH HOH . 
N 4 HOH A 11 611 31 HOH HOH . 
N 4 HOH A 12 612 3 HOH HOH . 
N 4 HOH A 13 613 17 HOH HOH . 
N 4 HOH A 14 614 11 HOH HOH . 
N 4 HOH A 15 615 29 HOH HOH . 
N 4 HOH A 16 616 22 HOH HOH . 
N 4 HOH A 17 617 18 HOH HOH . 
N 4 HOH A 18 618 33 HOH HOH . 
O 4 HOH B 1 601 10 HOH HOH . 
O 4 HOH B 2 602 8 HOH HOH . 
O 4 HOH B 3 603 26 HOH HOH . 
O 4 HOH B 4 604 23 HOH HOH . 
O 4 HOH B 5 605 24 HOH HOH . 
O 4 HOH B 6 606 5 HOH HOH . 
O 4 HOH B 7 607 4 HOH HOH . 
O 4 HOH B 8 608 6 HOH HOH . 
O 4 HOH B 9 609 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAL 37X . . . D 2 -21.146 -20.191 -45.157 1 99.9 ? OAL 37X 502 A 1 
HETATM 2 O OAN 37X . . . D 2 -16.879 -21.99 -41.156 1 101.57 ? OAN 37X 502 A 1 
HETATM 3 C C1 37X . . . D 2 -23.889 -17.229 -39.345 1 111.12 ? C1 37X 502 A 1 
HETATM 4 O O1 37X . . . D 2 -22.857 -16.388 -39.783 1 108.61 ? O1 37X 502 A 1 
HETATM 5 C C2 37X . . . D 2 -25.206 -16.523 -39.659 1 113.55 ? C2 37X 502 A 1 
HETATM 6 O O2 37X . . . D 2 -25.351 -16.361 -41.064 1 114.06 ? O2 37X 502 A 1 
HETATM 7 C C3 37X . . . D 2 -26.384 -17.3 -39.08 1 116.07 ? C3 37X 502 A 1 
HETATM 8 O O3 37X . . . D 2 -27.598 -16.587 -39.302 1 118.02 ? O3 37X 502 A 1 
HETATM 9 C C4 37X . . . D 2 -26.178 -17.544 -37.588 1 115.52 ? C4 37X 502 A 1 
HETATM 10 O O4 37X . . . D 2 -27.256 -18.308 -37.057 1 116.09 ? O4 37X 502 A 1 
HETATM 11 C C5 37X . . . D 2 -24.842 -18.251 -37.363 1 114.33 ? C5 37X 502 A 1 
HETATM 12 O O5 37X . . . D 2 -23.774 -17.479 -37.95 1 113.15 ? O5 37X 502 A 1 
HETATM 13 C C6 37X . . . D 2 -24.491 -18.415 -35.9 1 113.97 ? C6 37X 502 A 1 
HETATM 14 O O6 37X . . . D 2 -25.136 -19.542 -35.33 1 114.27 ? O6 37X 502 A 1 
HETATM 15 O OAP 37X . . . D 2 -18.287 -20.124 -39.456 1 100.56 ? OAP 37X 502 A 1 
HETATM 16 C CBC 37X . . . D 2 -17.402 -11.696 -37.584 1 96.1 ? CBC 37X 502 A 1 
HETATM 17 C CBD 37X . . . D 2 -23.438 -9.924 -42.648 1 109.42 ? CBD 37X 502 A 1 
HETATM 18 C CBE 37X . . . D 2 -17.239 -13.175 -37.339 1 95.92 ? CBE 37X 502 A 1 
HETATM 19 C CBF 37X . . . D 2 -23.23 -11.33 -42.145 1 109.47 ? CBF 37X 502 A 1 
HETATM 20 C CBG 37X . . . D 2 -16.849 -13.944 -38.583 1 95.3 ? CBG 37X 502 A 1 
HETATM 21 C CBH 37X . . . D 2 -22.777 -11.394 -40.691 1 108.04 ? CBH 37X 502 A 1 
HETATM 22 C CBI 37X . . . D 2 -17.068 -15.451 -38.513 1 95.86 ? CBI 37X 502 A 1 
HETATM 23 C CBJ 37X . . . D 2 -22.584 -12.806 -40.156 1 105.69 ? CBJ 37X 502 A 1 
HETATM 24 C CBK 37X . . . D 2 -18.515 -15.91 -38.68 1 98.64 ? CBK 37X 502 A 1 
HETATM 25 C CBL 37X . . . D 2 -21.193 -13.363 -40.383 1 104.52 ? CBL 37X 502 A 1 
HETATM 26 C CBP 37X . . . D 2 -19.768 -20.417 -44.888 1 99.31 ? CBP 37X 502 A 1 
HETATM 27 C CBQ 37X . . . D 2 -19.146 -15.444 -39.99 1 100.66 ? CBQ 37X 502 A 1 
HETATM 28 C CBR 37X . . . D 2 -21.184 -14.703 -41.125 1 104.26 ? CBR 37X 502 A 1 
HETATM 29 C CBS 37X . . . D 2 -21.528 -16.375 -39.272 1 104.98 ? CBS 37X 502 A 1 
HETATM 30 C CBT 37X . . . D 2 -20.478 -17.089 -41.351 1 101.43 ? CBT 37X 502 A 1 
HETATM 31 O OBV 37X . . . D 2 -19.757 -18.152 -40.738 1 100.53 ? OBV 37X 502 A 1 
HETATM 32 O OBX 37X . . . D 2 -19.652 -19.339 -42.771 1 99.59 ? OBX 37X 502 A 1 
HETATM 33 O OCB 37X . . . D 2 -18.076 -22.52 -43.68 1 100.89 ? OCB 37X 502 A 1 
HETATM 34 C CCF 37X . . . D 2 -19.543 -20.626 -43.409 1 98.85 ? CCF 37X 502 A 1 
HETATM 35 C CCH 37X . . . D 2 -18.104 -21.379 -41.544 1 100.11 ? CCH 37X 502 A 1 
HETATM 36 C CCJ 37X . . . D 2 -19.617 -19.404 -41.351 1 99.82 ? CCJ 37X 502 A 1 
HETATM 37 C CCL 37X . . . D 2 -18.299 -20.017 -40.878 1 100.17 ? CCL 37X 502 A 1 
HETATM 38 C CCM 37X . . . D 2 -20.574 -15.913 -40.377 1 102.71 ? CCM 37X 502 A 1 
HETATM 39 C CCQ 37X . . . D 2 -18.192 -21.245 -43.061 1 99.07 ? CCQ 37X 502 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#