data_5C65
#
_model_server_result.job_id            qa_HMSxqx7d1vdE6llGVHw 
_model_server_result.datetime_utc      '2024-10-31 06:18:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":502}' 
#
_entry.id    5C65 
#
_exptl.entry_id    5C65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.695 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Octyl Glucose Neopentyl Glycol' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.91 
_cell.angle_gamma         90 
_cell.entry_id            5C65 
_cell.length_a            63.55 
_cell.length_b            116.03 
_cell.length_c            99.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C27 H52 O12' 
_chem_comp.formula_weight    568.695 
_chem_comp.id                37X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Octyl Glucose Neopentyl Glycol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 37X sing 1 n n 
O3 C3 37X sing 2 n n 
C3 C4 37X sing 3 n n 
C3 C2 37X sing 4 n n 
C4 C5 37X sing 5 n n 
O6 C6 37X sing 6 n n 
O2 C2 37X sing 7 n n 
C5 C6 37X sing 8 n n 
C5 O5 37X sing 9 n n 
C2 C1 37X sing 10 n n 
CBC CBE 37X sing 11 n n 
CBE CBG 37X sing 12 n n 
C1 O5 37X sing 13 n n 
C1 O1 37X sing 14 n n 
CBG CBI 37X sing 15 n n 
O1 CBS 37X sing 16 n n 
CBI CBK 37X sing 17 n n 
CBS CCM 37X sing 18 n n 
CBK CBQ 37X sing 19 n n 
CBQ CCM 37X sing 20 n n 
CCM CBT 37X sing 21 n n 
CCM CBR 37X sing 22 n n 
CBT OBV 37X sing 23 n n 
CBR CBL 37X sing 24 n n 
OBV CCJ 37X sing 25 n n 
OAP CCL 37X sing 26 n n 
CCL CCJ 37X sing 27 n n 
CCL CCH 37X sing 28 n n 
OAN CCH 37X sing 29 n n 
CCJ OBX 37X sing 30 n n 
CBL CBJ 37X sing 31 n n 
OBX CCF 37X sing 32 n n 
CCH CCQ 37X sing 33 n n 
CCQ CCF 37X sing 34 n n 
CCQ OCB 37X sing 35 n n 
CBJ CBH 37X sing 36 n n 
CCF CBP 37X sing 37 n n 
CBP OAL 37X sing 38 n n 
CBH CBF 37X sing 39 n n 
CBF CBD 37X sing 40 n n 
OAL H1 37X sing 41 n n 
OAN H2 37X sing 42 n n 
C1 H3 37X sing 43 n n 
C2 H4 37X sing 44 n n 
O2 H5 37X sing 45 n n 
C3 H6 37X sing 46 n n 
O3 H7 37X sing 47 n n 
C4 H8 37X sing 48 n n 
O4 H9 37X sing 49 n n 
C5 H10 37X sing 50 n n 
C6 H11 37X sing 51 n n 
C6 H12 37X sing 52 n n 
O6 H13 37X sing 53 n n 
OAP H14 37X sing 54 n n 
CBC H15 37X sing 55 n n 
CBC H16 37X sing 56 n n 
CBC H17 37X sing 57 n n 
CBD H18 37X sing 58 n n 
CBD H19 37X sing 59 n n 
CBD H20 37X sing 60 n n 
CBE H21 37X sing 61 n n 
CBE H22 37X sing 62 n n 
CBF H23 37X sing 63 n n 
CBF H24 37X sing 64 n n 
CBG H25 37X sing 65 n n 
CBG H26 37X sing 66 n n 
CBH H27 37X sing 67 n n 
CBH H28 37X sing 68 n n 
CBI H29 37X sing 69 n n 
CBI H30 37X sing 70 n n 
CBJ H31 37X sing 71 n n 
CBJ H32 37X sing 72 n n 
CBK H33 37X sing 73 n n 
CBK H34 37X sing 74 n n 
CBL H35 37X sing 75 n n 
CBL H36 37X sing 76 n n 
CBP H37 37X sing 77 n n 
CBP H38 37X sing 78 n n 
CBQ H39 37X sing 79 n n 
CBQ H40 37X sing 80 n n 
CBR H41 37X sing 81 n n 
CBR H42 37X sing 82 n n 
CBS H43 37X sing 83 n n 
CBS H44 37X sing 84 n n 
CBT H45 37X sing 85 n n 
CBT H46 37X sing 86 n n 
OCB H47 37X sing 87 n n 
CCF H48 37X sing 88 n n 
CCH H49 37X sing 89 n n 
CCJ H50 37X sing 90 n n 
CCL H51 37X sing 91 n n 
CCQ H52 37X sing 92 n n 
#
_atom_sites.entry_id                     5C65 
_atom_sites.fract_transf_matrix[1][1]    0.015736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 37X A 1 501 1 37X 37X . 
D 2 37X A 1 502 2 37X 37X . 
E 2 37X A 1 503 4 37X 37X . 
F 2 37X A 1 504 5 37X 37X . 
G 2 37X A 1 505 7 37X 37X . 
H 2 37X A 1 506 8 37X 37X . 
I 3 Y01 A 1 507 1 Y01 Y01 . 
J 2 37X B 1 501 3 37X 37X . 
K 2 37X B 1 502 6 37X 37X . 
L 2 37X B 1 503 9 37X 37X . 
M 3 Y01 B 1 504 2 Y01 Y01 . 
N 4 HOH A 1 601 30 HOH HOH . 
N 4 HOH A 2 602 7 HOH HOH . 
N 4 HOH A 3 603 1 HOH HOH . 
N 4 HOH A 4 604 9 HOH HOH . 
N 4 HOH A 5 605 16 HOH HOH . 
N 4 HOH A 6 606 21 HOH HOH . 
N 4 HOH A 7 607 12 HOH HOH . 
N 4 HOH A 8 608 19 HOH HOH . 
N 4 HOH A 9 609 20 HOH HOH . 
N 4 HOH A 10 610 15 HOH HOH . 
N 4 HOH A 11 611 31 HOH HOH . 
N 4 HOH A 12 612 3 HOH HOH . 
N 4 HOH A 13 613 17 HOH HOH . 
N 4 HOH A 14 614 11 HOH HOH . 
N 4 HOH A 15 615 29 HOH HOH . 
N 4 HOH A 16 616 22 HOH HOH . 
N 4 HOH A 17 617 18 HOH HOH . 
N 4 HOH A 18 618 33 HOH HOH . 
O 4 HOH B 1 601 10 HOH HOH . 
O 4 HOH B 2 602 8 HOH HOH . 
O 4 HOH B 3 603 26 HOH HOH . 
O 4 HOH B 4 604 23 HOH HOH . 
O 4 HOH B 5 605 24 HOH HOH . 
O 4 HOH B 6 606 5 HOH HOH . 
O 4 HOH B 7 607 4 HOH HOH . 
O 4 HOH B 8 608 6 HOH HOH . 
O 4 HOH B 9 609 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAL 37X . . . K 2 -6.849 -24.611 -22.735 1 152.52 ? OAL 37X 502 B 1 
HETATM 2 O OAN 37X . . . K 2 -4.551 -27.453 -27.68 1 152.82 ? OAN 37X 502 B 1 
HETATM 3 C C1 37X . . . K 2 -11.958 -25.569 -28.735 1 148.83 ? C1 37X 502 B 1 
HETATM 4 O O1 37X . . . K 2 -10.712 -24.954 -28.593 1 143.96 ? O1 37X 502 B 1 
HETATM 5 C C2 37X . . . K 2 -11.873 -26.958 -28.109 1 151.76 ? C2 37X 502 B 1 
HETATM 6 O O2 37X . . . K 2 -11.521 -26.864 -26.732 1 152 ? O2 37X 502 B 1 
HETATM 7 C C3 37X . . . K 2 -13.213 -27.672 -28.264 1 153.65 ? C3 37X 502 B 1 
HETATM 8 O O3 37X . . . K 2 -13.114 -29.007 -27.778 1 154.89 ? O3 37X 502 B 1 
HETATM 9 C C4 37X . . . K 2 -13.684 -27.67 -29.72 1 153.18 ? C4 37X 502 B 1 
HETATM 10 O O4 37X . . . K 2 -15.024 -28.149 -29.789 1 153.54 ? O4 37X 502 B 1 
HETATM 11 C C5 37X . . . K 2 -13.626 -26.26 -30.311 1 151.99 ? C5 37X 502 B 1 
HETATM 12 O O5 37X . . . K 2 -12.321 -25.685 -30.103 1 150.65 ? O5 37X 502 B 1 
HETATM 13 C C6 37X . . . K 2 -13.883 -26.222 -31.803 1 151.88 ? C6 37X 502 B 1 
HETATM 14 O O6 37X . . . K 2 -15.251 -26.465 -32.109 1 151.93 ? O6 37X 502 B 1 
HETATM 15 O OAP 37X . . . K 2 -6.084 -25.409 -28.992 1 151.05 ? OAP 37X 502 B 1 
HETATM 16 C CBC 37X . . . K 2 -6.978 -15.731 -27.854 1 115.09 ? CBC 37X 502 B 1 
HETATM 17 C CBD 37X . . . K 2 -16.002 -19.213 -29.211 1 130.54 ? CBD 37X 502 B 1 
HETATM 18 C CBE 37X . . . K 2 -6.852 -17.119 -28.408 1 115.93 ? CBE 37X 502 B 1 
HETATM 19 C CBF 37X . . . K 2 -14.545 -19.307 -28.807 1 129.79 ? CBF 37X 502 B 1 
HETATM 20 C CBG 37X . . . K 2 -7.648 -18.15 -27.633 1 118.5 ? CBG 37X 502 B 1 
HETATM 21 C CBH 37X . . . K 2 -14.347 -20.014 -27.476 1 128.8 ? CBH 37X 502 B 1 
HETATM 22 C CBI 37X . . . K 2 -7.811 -19.473 -28.366 1 122.29 ? CBI 37X 502 B 1 
HETATM 23 C CBJ 37X . . . K 2 -12.903 -20.301 -27.094 1 128.67 ? CBJ 37X 502 B 1 
HETATM 24 C CBK 37X . . . K 2 -8.668 -20.487 -27.63 1 126.42 ? CBK 37X 502 B 1 
HETATM 25 C CBL 37X . . . K 2 -12.275 -21.463 -27.846 1 130.35 ? CBL 37X 502 B 1 
HETATM 26 C CBP 37X . . . K 2 -6.324 -25.753 -23.394 1 152.1 ? CBP 37X 502 B 1 
HETATM 27 C CBQ 37X . . . K 2 -9.113 -21.66 -28.509 1 130.88 ? CBQ 37X 502 B 1 
HETATM 28 C CBR 37X . . . K 2 -11.147 -22.142 -27.066 1 133.01 ? CBR 37X 502 B 1 
HETATM 29 C CBS 37X . . . K 2 -10.56 -23.603 -29.005 1 139.75 ? CBS 37X 502 B 1 
HETATM 30 C CBT 37X . . . K 2 -9.119 -23.519 -26.825 1 139.52 ? CBT 37X 502 B 1 
HETATM 31 O OBV 37X . . . K 2 -8.205 -24.381 -27.489 1 143.24 ? OBV 37X 502 B 1 
HETATM 32 O OBX 37X . . . K 2 -7.179 -25.119 -25.514 1 150.04 ? OBX 37X 502 B 1 
HETATM 33 O OCB 37X . . . K 2 -4 -26.859 -24.909 1 152.75 ? OCB 37X 502 B 1 
HETATM 34 C CCF 37X . . . K 2 -5.954 -25.448 -24.827 1 151.46 ? CCF 37X 502 B 1 
HETATM 35 C CCH 37X . . . K 2 -5.056 -26.305 -27.008 1 151.92 ? CCH 37X 502 B 1 
HETATM 36 C CCJ 37X . . . K 2 -6.995 -24.72 -26.866 1 147.94 ? CCJ 37X 502 B 1 
HETATM 37 C CCL 37X . . . K 2 -6.356 -25.852 -27.668 1 150.28 ? CCL 37X 502 B 1 
HETATM 38 C CCM 37X . . . K 2 -9.973 -22.778 -27.857 1 135.79 ? CCM 37X 502 B 1 
HETATM 39 C CCQ 37X . . . K 2 -5.26 -26.617 -25.527 1 152.21 ? CCQ 37X 502 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#