data_5C65
#
_model_server_result.job_id            ZNLNvxx2au4sFbO7Fg0x1Q 
_model_server_result.datetime_utc      '2024-10-31 06:16:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":504}' 
#
_entry.id    5C65 
#
_exptl.entry_id    5C65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.91 
_cell.angle_gamma         90 
_cell.entry_id            5C65 
_cell.length_a            63.55 
_cell.length_b            116.03 
_cell.length_c            99.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 468 n n 
CBA CAB Y01 sing 469 n n 
CBA CAN Y01 sing 470 n n 
CAN CAJ Y01 sing 471 n n 
CAJ CAO Y01 sing 472 n n 
CAO CBB Y01 sing 473 n n 
CBB CAC Y01 sing 474 n n 
CBB CBE Y01 sing 475 n n 
CBE CAP Y01 sing 476 n n 
CBE CBI Y01 sing 477 n n 
CAP CAQ Y01 sing 478 n n 
CAQ CBG Y01 sing 479 n n 
CBG CBI Y01 sing 480 n n 
CBG CBD Y01 sing 481 n n 
CBI CAE Y01 sing 482 n n 
CBI CAU Y01 sing 483 n n 
CAU CAS Y01 sing 484 n n 
CAS CBF Y01 sing 485 n n 
CBF CBD Y01 sing 486 n n 
CBF CBH Y01 sing 487 n n 
CBD CAK Y01 sing 488 n n 
CAK CAI Y01 sing 489 n n 
CAI CAZ Y01 doub 490 n n 
CAZ CAV Y01 sing 491 n n 
CAZ CBH Y01 sing 492 n n 
CAV CBC Y01 sing 493 n n 
CBH CAD Y01 sing 494 n n 
CBH CAT Y01 sing 495 n n 
CAT CAR Y01 sing 496 n n 
CAR CBC Y01 sing 497 n n 
CBC OAW Y01 sing 498 n n 
OAW CAY Y01 sing 499 n n 
CAY OAG Y01 doub 500 n n 
CAY CAM Y01 sing 501 n n 
CAM CAL Y01 sing 502 n n 
CAL CAX Y01 sing 503 n n 
CAX OAH Y01 sing 504 n n 
CAX OAF Y01 doub 505 n n 
CAA HAA1 Y01 sing 506 n n 
CAA HAA2 Y01 sing 507 n n 
CAA HAA3 Y01 sing 508 n n 
CBA HBA Y01 sing 509 n n 
CAB HAB1 Y01 sing 510 n n 
CAB HAB2 Y01 sing 511 n n 
CAB HAB3 Y01 sing 512 n n 
CAN HAN1 Y01 sing 513 n n 
CAN HAN2 Y01 sing 514 n n 
CAJ HAJ1 Y01 sing 515 n n 
CAJ HAJ2 Y01 sing 516 n n 
CAO HAO1 Y01 sing 517 n n 
CAO HAO2 Y01 sing 518 n n 
CBB HBB Y01 sing 519 n n 
CAC HAC1 Y01 sing 520 n n 
CAC HAC2 Y01 sing 521 n n 
CAC HAC3 Y01 sing 522 n n 
CBE HBE Y01 sing 523 n n 
CAP HAP1 Y01 sing 524 n n 
CAP HAP2 Y01 sing 525 n n 
CAQ HAQ1 Y01 sing 526 n n 
CAQ HAQ2 Y01 sing 527 n n 
CBG HBG Y01 sing 528 n n 
CBD HBD Y01 sing 529 n n 
CAE HAE1 Y01 sing 530 n n 
CAE HAE2 Y01 sing 531 n n 
CAE HAE3 Y01 sing 532 n n 
CAU HAU1 Y01 sing 533 n n 
CAU HAU2 Y01 sing 534 n n 
CAS HAS1 Y01 sing 535 n n 
CAS HAS2 Y01 sing 536 n n 
CBF HBF Y01 sing 537 n n 
CAK HAK1 Y01 sing 538 n n 
CAK HAK2 Y01 sing 539 n n 
CAI HAI Y01 sing 540 n n 
CAV HAV1 Y01 sing 541 n n 
CAV HAV2 Y01 sing 542 n n 
CBC HBC Y01 sing 543 n n 
CAD HAD1 Y01 sing 544 n n 
CAD HAD2 Y01 sing 545 n n 
CAD HAD3 Y01 sing 546 n n 
CAT HAT1 Y01 sing 547 n n 
CAT HAT2 Y01 sing 548 n n 
CAR HAR1 Y01 sing 549 n n 
CAR HAR2 Y01 sing 550 n n 
CAM HAM1 Y01 sing 551 n n 
CAM HAM2 Y01 sing 552 n n 
CAL HAL1 Y01 sing 553 n n 
CAL HAL2 Y01 sing 554 n n 
OAH HAH Y01 sing 555 n n 
#
_atom_sites.entry_id                     5C65 
_atom_sites.fract_transf_matrix[1][1]    0.015736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 37X A 1 501 1 37X 37X . 
D 2 37X A 1 502 2 37X 37X . 
E 2 37X A 1 503 4 37X 37X . 
F 2 37X A 1 504 5 37X 37X . 
G 2 37X A 1 505 7 37X 37X . 
H 2 37X A 1 506 8 37X 37X . 
I 3 Y01 A 1 507 1 Y01 Y01 . 
J 2 37X B 1 501 3 37X 37X . 
K 2 37X B 1 502 6 37X 37X . 
L 2 37X B 1 503 9 37X 37X . 
M 3 Y01 B 1 504 2 Y01 Y01 . 
N 4 HOH A 1 601 30 HOH HOH . 
N 4 HOH A 2 602 7 HOH HOH . 
N 4 HOH A 3 603 1 HOH HOH . 
N 4 HOH A 4 604 9 HOH HOH . 
N 4 HOH A 5 605 16 HOH HOH . 
N 4 HOH A 6 606 21 HOH HOH . 
N 4 HOH A 7 607 12 HOH HOH . 
N 4 HOH A 8 608 19 HOH HOH . 
N 4 HOH A 9 609 20 HOH HOH . 
N 4 HOH A 10 610 15 HOH HOH . 
N 4 HOH A 11 611 31 HOH HOH . 
N 4 HOH A 12 612 3 HOH HOH . 
N 4 HOH A 13 613 17 HOH HOH . 
N 4 HOH A 14 614 11 HOH HOH . 
N 4 HOH A 15 615 29 HOH HOH . 
N 4 HOH A 16 616 22 HOH HOH . 
N 4 HOH A 17 617 18 HOH HOH . 
N 4 HOH A 18 618 33 HOH HOH . 
O 4 HOH B 1 601 10 HOH HOH . 
O 4 HOH B 2 602 8 HOH HOH . 
O 4 HOH B 3 603 26 HOH HOH . 
O 4 HOH B 4 604 23 HOH HOH . 
O 4 HOH B 5 605 24 HOH HOH . 
O 4 HOH B 6 606 5 HOH HOH . 
O 4 HOH B 7 607 4 HOH HOH . 
O 4 HOH B 8 608 6 HOH HOH . 
O 4 HOH B 9 609 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . M 3 -24.436 -15.605 -1.595 1 142.2 ? CAA Y01 504 B 1 
HETATM 2 C CBA Y01 . . . M 3 -23.275 -16.492 -1.189 1 143.32 ? CBA Y01 504 B 1 
HETATM 3 C CAB Y01 . . . M 3 -23.779 -17.89 -0.87 1 142.94 ? CAB Y01 504 B 1 
HETATM 4 C CAN Y01 . . . M 3 -22.155 -16.461 -2.249 1 145.27 ? CAN Y01 504 B 1 
HETATM 5 C CAJ Y01 . . . M 3 -20.758 -16.94 -1.839 1 146.94 ? CAJ Y01 504 B 1 
HETATM 6 C CAO Y01 . . . M 3 -20.311 -18.205 -2.567 1 148.26 ? CAO Y01 504 B 1 
HETATM 7 C CBB Y01 . . . M 3 -18.893 -18.71 -2.225 1 149.27 ? CBB Y01 504 B 1 
HETATM 8 C CAC Y01 . . . M 3 -18.97 -19.791 -1.148 1 149.7 ? CAC Y01 504 B 1 
HETATM 9 C CBE Y01 . . . M 3 -18.143 -19.15 -3.504 1 150.24 ? CBE Y01 504 B 1 
HETATM 10 C CAP Y01 . . . M 3 -18.148 -18.047 -4.592 1 151.02 ? CAP Y01 504 B 1 
HETATM 11 C CAQ Y01 . . . M 3 -16.856 -18.218 -5.409 1 151.88 ? CAQ Y01 504 B 1 
HETATM 12 C CBG Y01 . . . M 3 -16.337 -19.592 -4.961 1 151.81 ? CBG Y01 504 B 1 
HETATM 13 C CBI Y01 . . . M 3 -16.657 -19.615 -3.443 1 150.98 ? CBI Y01 504 B 1 
HETATM 14 C CAE Y01 . . . M 3 -15.78 -18.638 -2.627 1 150.53 ? CAE Y01 504 B 1 
HETATM 15 C CAU Y01 . . . M 3 -16.415 -21.064 -2.973 1 151.5 ? CAU Y01 504 B 1 
HETATM 16 C CAS Y01 . . . M 3 -15.018 -21.597 -3.319 1 151.68 ? CAS Y01 504 B 1 
HETATM 17 C CBF Y01 . . . M 3 -14.669 -21.479 -4.816 1 152.19 ? CBF Y01 504 B 1 
HETATM 18 C CBD Y01 . . . M 3 -14.914 -20.049 -5.357 1 152.01 ? CBD Y01 504 B 1 
HETATM 19 C CAK Y01 . . . M 3 -14.746 -20.03 -6.88 1 151.87 ? CAK Y01 504 B 1 
HETATM 20 C CAI Y01 . . . M 3 -13.603 -20.871 -7.366 1 151.72 ? CAI Y01 504 B 1 
HETATM 21 C CAZ Y01 . . . M 3 -12.941 -21.767 -6.641 1 152 ? CAZ Y01 504 B 1 
HETATM 22 C CAV Y01 . . . M 3 -11.811 -22.568 -7.261 1 151.69 ? CAV Y01 504 B 1 
HETATM 23 C CBH Y01 . . . M 3 -13.243 -22.024 -5.158 1 152.35 ? CBH Y01 504 B 1 
HETATM 24 C CAD Y01 . . . M 3 -12.146 -21.332 -4.313 1 152.03 ? CAD Y01 504 B 1 
HETATM 25 C CAT Y01 . . . M 3 -13.219 -23.549 -4.885 1 152.08 ? CAT Y01 504 B 1 
HETATM 26 C CAR Y01 . . . M 3 -12.03 -24.306 -5.485 1 152.11 ? CAR Y01 504 B 1 
HETATM 27 C CBC Y01 . . . M 3 -11.948 -24.051 -6.973 1 152.43 ? CBC Y01 504 B 1 
HETATM 28 O OAW Y01 . . . M 3 -10.803 -24.774 -7.534 1 153.47 ? OAW Y01 504 B 1 
HETATM 29 C CAY Y01 . . . M 3 -10.983 -26.041 -7.967 1 154.72 ? CAY Y01 504 B 1 
HETATM 30 O OAG Y01 . . . M 3 -12.018 -26.645 -7.872 1 155.05 ? OAG Y01 504 B 1 
HETATM 31 C CAM Y01 . . . M 3 -9.734 -26.589 -8.586 1 156.11 ? CAM Y01 504 B 1 
HETATM 32 C CAL Y01 . . . M 3 -9.839 -26.747 -10.096 1 157.75 ? CAL Y01 504 B 1 
HETATM 33 C CAX Y01 . . . M 3 -9.668 -28.156 -10.587 1 158.9 ? CAX Y01 504 B 1 
HETATM 34 O OAH Y01 . . . M 3 -8.819 -28.251 -11.577 1 159.18 ? OAH Y01 504 B 1 
HETATM 35 O OAF Y01 . . . M 3 -10.272 -29.112 -10.129 1 159.07 ? OAF Y01 504 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#