data_5C65
#
_model_server_result.job_id            SyRfPOoujagIxGAKd9mNqw 
_model_server_result.datetime_utc      '2024-11-24 00:56:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":507}' 
#
_entry.id    5C65 
#
_exptl.entry_id    5C65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.91 
_cell.angle_gamma         90 
_cell.entry_id            5C65 
_cell.length_a            63.55 
_cell.length_b            116.03 
_cell.length_c            99.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 468 n n 
CBA CAB Y01 sing 469 n n 
CBA CAN Y01 sing 470 n n 
CAN CAJ Y01 sing 471 n n 
CAJ CAO Y01 sing 472 n n 
CAO CBB Y01 sing 473 n n 
CBB CAC Y01 sing 474 n n 
CBB CBE Y01 sing 475 n n 
CBE CAP Y01 sing 476 n n 
CBE CBI Y01 sing 477 n n 
CAP CAQ Y01 sing 478 n n 
CAQ CBG Y01 sing 479 n n 
CBG CBI Y01 sing 480 n n 
CBG CBD Y01 sing 481 n n 
CBI CAE Y01 sing 482 n n 
CBI CAU Y01 sing 483 n n 
CAU CAS Y01 sing 484 n n 
CAS CBF Y01 sing 485 n n 
CBF CBD Y01 sing 486 n n 
CBF CBH Y01 sing 487 n n 
CBD CAK Y01 sing 488 n n 
CAK CAI Y01 sing 489 n n 
CAI CAZ Y01 doub 490 n n 
CAZ CAV Y01 sing 491 n n 
CAZ CBH Y01 sing 492 n n 
CAV CBC Y01 sing 493 n n 
CBH CAD Y01 sing 494 n n 
CBH CAT Y01 sing 495 n n 
CAT CAR Y01 sing 496 n n 
CAR CBC Y01 sing 497 n n 
CBC OAW Y01 sing 498 n n 
OAW CAY Y01 sing 499 n n 
CAY OAG Y01 doub 500 n n 
CAY CAM Y01 sing 501 n n 
CAM CAL Y01 sing 502 n n 
CAL CAX Y01 sing 503 n n 
CAX OAH Y01 sing 504 n n 
CAX OAF Y01 doub 505 n n 
CAA HAA1 Y01 sing 506 n n 
CAA HAA2 Y01 sing 507 n n 
CAA HAA3 Y01 sing 508 n n 
CBA HBA Y01 sing 509 n n 
CAB HAB1 Y01 sing 510 n n 
CAB HAB2 Y01 sing 511 n n 
CAB HAB3 Y01 sing 512 n n 
CAN HAN1 Y01 sing 513 n n 
CAN HAN2 Y01 sing 514 n n 
CAJ HAJ1 Y01 sing 515 n n 
CAJ HAJ2 Y01 sing 516 n n 
CAO HAO1 Y01 sing 517 n n 
CAO HAO2 Y01 sing 518 n n 
CBB HBB Y01 sing 519 n n 
CAC HAC1 Y01 sing 520 n n 
CAC HAC2 Y01 sing 521 n n 
CAC HAC3 Y01 sing 522 n n 
CBE HBE Y01 sing 523 n n 
CAP HAP1 Y01 sing 524 n n 
CAP HAP2 Y01 sing 525 n n 
CAQ HAQ1 Y01 sing 526 n n 
CAQ HAQ2 Y01 sing 527 n n 
CBG HBG Y01 sing 528 n n 
CBD HBD Y01 sing 529 n n 
CAE HAE1 Y01 sing 530 n n 
CAE HAE2 Y01 sing 531 n n 
CAE HAE3 Y01 sing 532 n n 
CAU HAU1 Y01 sing 533 n n 
CAU HAU2 Y01 sing 534 n n 
CAS HAS1 Y01 sing 535 n n 
CAS HAS2 Y01 sing 536 n n 
CBF HBF Y01 sing 537 n n 
CAK HAK1 Y01 sing 538 n n 
CAK HAK2 Y01 sing 539 n n 
CAI HAI Y01 sing 540 n n 
CAV HAV1 Y01 sing 541 n n 
CAV HAV2 Y01 sing 542 n n 
CBC HBC Y01 sing 543 n n 
CAD HAD1 Y01 sing 544 n n 
CAD HAD2 Y01 sing 545 n n 
CAD HAD3 Y01 sing 546 n n 
CAT HAT1 Y01 sing 547 n n 
CAT HAT2 Y01 sing 548 n n 
CAR HAR1 Y01 sing 549 n n 
CAR HAR2 Y01 sing 550 n n 
CAM HAM1 Y01 sing 551 n n 
CAM HAM2 Y01 sing 552 n n 
CAL HAL1 Y01 sing 553 n n 
CAL HAL2 Y01 sing 554 n n 
OAH HAH Y01 sing 555 n n 
#
_atom_sites.entry_id                     5C65 
_atom_sites.fract_transf_matrix[1][1]    0.015736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 37X A 1 501 1 37X 37X . 
D 2 37X A 1 502 2 37X 37X . 
E 2 37X A 1 503 4 37X 37X . 
F 2 37X A 1 504 5 37X 37X . 
G 2 37X A 1 505 7 37X 37X . 
H 2 37X A 1 506 8 37X 37X . 
I 3 Y01 A 1 507 1 Y01 Y01 . 
J 2 37X B 1 501 3 37X 37X . 
K 2 37X B 1 502 6 37X 37X . 
L 2 37X B 1 503 9 37X 37X . 
M 3 Y01 B 1 504 2 Y01 Y01 . 
N 4 HOH A 1 601 30 HOH HOH . 
N 4 HOH A 2 602 7 HOH HOH . 
N 4 HOH A 3 603 1 HOH HOH . 
N 4 HOH A 4 604 9 HOH HOH . 
N 4 HOH A 5 605 16 HOH HOH . 
N 4 HOH A 6 606 21 HOH HOH . 
N 4 HOH A 7 607 12 HOH HOH . 
N 4 HOH A 8 608 19 HOH HOH . 
N 4 HOH A 9 609 20 HOH HOH . 
N 4 HOH A 10 610 15 HOH HOH . 
N 4 HOH A 11 611 31 HOH HOH . 
N 4 HOH A 12 612 3 HOH HOH . 
N 4 HOH A 13 613 17 HOH HOH . 
N 4 HOH A 14 614 11 HOH HOH . 
N 4 HOH A 15 615 29 HOH HOH . 
N 4 HOH A 16 616 22 HOH HOH . 
N 4 HOH A 17 617 18 HOH HOH . 
N 4 HOH A 18 618 33 HOH HOH . 
O 4 HOH B 1 601 10 HOH HOH . 
O 4 HOH B 2 602 8 HOH HOH . 
O 4 HOH B 3 603 26 HOH HOH . 
O 4 HOH B 4 604 23 HOH HOH . 
O 4 HOH B 5 605 24 HOH HOH . 
O 4 HOH B 6 606 5 HOH HOH . 
O 4 HOH B 7 607 4 HOH HOH . 
O 4 HOH B 8 608 6 HOH HOH . 
O 4 HOH B 9 609 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . I 3 11.709 1.089 -65.081 1 122.55 ? CAA Y01 507 A 1 
HETATM 2 C CBA Y01 . . . I 3 12.555 -0.169 -65.059 1 123.25 ? CBA Y01 507 A 1 
HETATM 3 C CAB Y01 . . . I 3 14.031 0.205 -65.043 1 123.75 ? CAB Y01 507 A 1 
HETATM 4 C CAN Y01 . . . I 3 12.11 -1.107 -63.919 1 123.1 ? CAN Y01 507 A 1 
HETATM 5 C CAJ Y01 . . . I 3 12.567 -2.568 -63.949 1 123.29 ? CAJ Y01 507 A 1 
HETATM 6 C CAO Y01 . . . I 3 13.676 -2.877 -62.948 1 124.03 ? CAO Y01 507 A 1 
HETATM 7 C CBB Y01 . . . I 3 14.068 -4.364 -62.819 1 125.63 ? CBB Y01 507 A 1 
HETATM 8 C CAC Y01 . . . I 3 15.299 -4.658 -63.679 1 126.08 ? CAC Y01 507 A 1 
HETATM 9 C CBE Y01 . . . I 3 14.228 -4.754 -61.332 1 126.73 ? CBE Y01 507 A 1 
HETATM 10 C CAP Y01 . . . I 3 12.982 -4.356 -60.497 1 127.54 ? CAP Y01 507 A 1 
HETATM 11 C CAQ Y01 . . . I 3 12.745 -5.466 -59.47 1 128.59 ? CAQ Y01 507 A 1 
HETATM 12 C CBG Y01 . . . I 3 14.112 -6.148 -59.421 1 128.94 ? CBG Y01 507 A 1 
HETATM 13 C CBI Y01 . . . I 3 14.519 -6.232 -60.914 1 127.87 ? CBI Y01 507 A 1 
HETATM 14 C CAE Y01 . . . I 3 13.657 -7.234 -61.715 1 127.79 ? CAE Y01 507 A 1 
HETATM 15 C CAU Y01 . . . I 3 15.999 -6.668 -60.935 1 128.58 ? CAU Y01 507 A 1 
HETATM 16 C CAS Y01 . . . I 3 16.292 -7.937 -60.119 1 129.3 ? CAS Y01 507 A 1 
HETATM 17 C CBF Y01 . . . I 3 15.788 -7.868 -58.663 1 131.16 ? CBF Y01 507 A 1 
HETATM 18 C CBD Y01 . . . I 3 14.3 -7.443 -58.598 1 130.54 ? CBD Y01 507 A 1 
HETATM 19 C CAK Y01 . . . I 3 13.878 -7.219 -57.143 1 130.59 ? CAK Y01 507 A 1 
HETATM 20 C CAI Y01 . . . I 3 14.428 -8.244 -56.199 1 131.28 ? CAI Y01 507 A 1 
HETATM 21 C CAZ Y01 . . . I 3 15.405 -9.097 -56.473 1 132.64 ? CAZ Y01 507 A 1 
HETATM 22 C CAV Y01 . . . I 3 15.888 -10.068 -55.413 1 133.39 ? CAV Y01 507 A 1 
HETATM 23 C CBH Y01 . . . I 3 16.093 -9.17 -57.844 1 132.63 ? CBH Y01 507 A 1 
HETATM 24 C CAD Y01 . . . I 3 15.589 -10.437 -58.574 1 133.8 ? CAD Y01 507 A 1 
HETATM 25 C CAT Y01 . . . I 3 17.628 -9.275 -57.637 1 132.27 ? CAT Y01 507 A 1 
HETATM 26 C CAR Y01 . . . I 3 18.092 -10.271 -56.564 1 133.13 ? CAR Y01 507 A 1 
HETATM 27 C CBC Y01 . . . I 3 17.394 -9.999 -55.249 1 134.28 ? CBC Y01 507 A 1 
HETATM 28 O OAW Y01 . . . I 3 17.834 -10.945 -54.217 1 135.44 ? OAW Y01 507 A 1 
HETATM 29 C CAY Y01 . . . I 3 18.833 -10.571 -53.388 1 137.51 ? CAY Y01 507 A 1 
HETATM 30 O OAG Y01 . . . I 3 19.458 -9.549 -53.506 1 138.81 ? OAG Y01 507 A 1 
HETATM 31 C CAM Y01 . . . I 3 19.057 -11.585 -52.299 1 138.45 ? CAM Y01 507 A 1 
HETATM 32 C CAL Y01 . . . I 3 19.005 -10.977 -50.901 1 140.25 ? CAL Y01 507 A 1 
HETATM 33 C CAX Y01 . . . I 3 19.53 -11.868 -49.811 1 141.33 ? CAX Y01 507 A 1 
HETATM 34 O OAH Y01 . . . I 3 18.593 -12.51 -49.158 1 140.7 ? OAH Y01 507 A 1 
HETATM 35 O OAF Y01 . . . I 3 20.713 -11.959 -49.542 1 142.18 ? OAF Y01 507 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           407 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#