data_5C68
#
_model_server_result.job_id            CTYceenJCVF8u66hQiegIA 
_model_server_result.datetime_utc      '2025-04-12 13:12:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5C68 
#
_exptl.entry_id    5C68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C68 
_cell.length_a            42.234 
_cell.length_b            42.234 
_cell.length_c            118.485 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C68 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 59.2425 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 8 A GLN 8 1_555 B NI NI . A NI 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc2 A OE1 GLN 8 A GLN 8 1_555 B NI NI . A NI 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc3 A NE2 HIS 65 A HIS 65 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc4 A OE2 GLU 117 A GLU 117 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc5 B NI NI . A NI 201 1_555 D O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc6 B NI NI . A NI 201 1_555 D O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc7 B NI NI . A NI 201 1_555 D O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C68 
_atom_sites.fract_transf_matrix[1][1]    0.023678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 201 1 NI NI . 
C 3 NA A 1 202 1 NA NA . 
D 4 HOH A 1 301 8 HOH HOH . 
D 4 HOH A 2 302 20 HOH HOH . 
D 4 HOH A 3 303 21 HOH HOH . 
D 4 HOH A 4 304 4 HOH HOH . 
D 4 HOH A 5 305 22 HOH HOH . 
D 4 HOH A 6 306 30 HOH HOH . 
D 4 HOH A 7 307 12 HOH HOH . 
D 4 HOH A 8 308 23 HOH HOH . 
D 4 HOH A 9 309 1 HOH HOH . 
D 4 HOH A 10 310 6 HOH HOH . 
D 4 HOH A 11 311 11 HOH HOH . 
D 4 HOH A 12 312 5 HOH HOH . 
D 4 HOH A 13 313 13 HOH HOH . 
D 4 HOH A 14 314 10 HOH HOH . 
D 4 HOH A 15 315 16 HOH HOH . 
D 4 HOH A 16 316 4 HOH HOH . 
D 4 HOH A 17 317 8 HOH HOH . 
D 4 HOH A 18 318 18 HOH HOH . 
D 4 HOH A 19 319 7 HOH HOH . 
D 4 HOH A 20 320 9 HOH HOH . 
D 4 HOH A 21 321 6 HOH HOH . 
D 4 HOH A 22 322 16 HOH HOH . 
D 4 HOH A 23 323 3 HOH HOH . 
D 4 HOH A 24 324 13 HOH HOH . 
D 4 HOH A 25 325 20 HOH HOH . 
D 4 HOH A 26 326 11 HOH HOH . 
D 4 HOH A 27 327 1 HOH HOH . 
D 4 HOH A 28 328 7 HOH HOH . 
D 4 HOH A 29 329 3 HOH HOH . 
D 4 HOH A 30 330 19 HOH HOH . 
D 4 HOH A 31 331 27 HOH HOH . 
D 4 HOH A 32 332 26 HOH HOH . 
D 4 HOH A 33 333 33 HOH HOH . 
D 4 HOH A 34 334 22 HOH HOH . 
D 4 HOH A 35 335 1 HOH HOH . 
D 4 HOH A 36 336 5 HOH HOH . 
D 4 HOH A 37 337 9 HOH HOH . 
D 4 HOH A 38 338 21 HOH HOH . 
D 4 HOH A 39 339 4 HOH HOH . 
D 4 HOH A 40 340 32 HOH HOH . 
D 4 HOH A 41 341 2 HOH HOH . 
D 4 HOH A 42 342 19 HOH HOH . 
D 4 HOH A 43 343 8 HOH HOH . 
D 4 HOH A 44 344 14 HOH HOH . 
D 4 HOH A 45 345 10 HOH HOH . 
D 4 HOH A 46 346 2 HOH HOH . 
D 4 HOH A 47 347 1 HOH HOH . 
D 4 HOH A 48 348 17 HOH HOH . 
D 4 HOH A 49 349 11 HOH HOH . 
D 4 HOH A 50 350 3 HOH HOH . 
D 4 HOH A 51 351 7 HOH HOH . 
D 4 HOH A 52 352 34 HOH HOH . 
D 4 HOH A 53 353 2 HOH HOH . 
D 4 HOH A 54 354 14 HOH HOH . 
D 4 HOH A 55 355 7 HOH HOH . 
D 4 HOH A 56 356 5 HOH HOH . 
D 4 HOH A 57 357 2 HOH HOH . 
D 4 HOH A 58 358 1 HOH HOH . 
D 4 HOH A 59 359 3 HOH HOH . 
D 4 HOH A 60 360 5 HOH HOH . 
D 4 HOH A 61 361 10 HOH HOH . 
D 4 HOH A 62 362 10 HOH HOH . 
D 4 HOH A 63 363 2 HOH HOH . 
D 4 HOH A 64 364 8 HOH HOH . 
D 4 HOH A 65 365 9 HOH HOH . 
D 4 HOH A 66 366 6 HOH HOH . 
D 4 HOH A 67 367 24 HOH HOH . 
D 4 HOH A 68 368 18 HOH HOH . 
D 4 HOH A 69 369 36 HOH HOH . 
D 4 HOH A 70 370 6 HOH HOH . 
D 4 HOH A 71 371 4 HOH HOH . 
D 4 HOH A 72 372 25 HOH HOH . 
D 4 HOH A 73 373 15 HOH HOH . 
D 4 HOH A 74 374 29 HOH HOH . 
D 4 HOH A 75 375 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               8.346 
_atom_site.Cartn_y               -6.568 
_atom_site.Cartn_z               17.537 
_atom_site.occupancy             0.37 
_atom_site.B_iso_or_equiv        20.32 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#