data_5C6C
#
_model_server_result.job_id            zPqutNx-Rj9dPOxTiKHzgA 
_model_server_result.datetime_utc      '2024-10-18 15:23:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    5C6C 
#
_exptl.entry_id    5C6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C6C 
_cell.length_a            46.71 
_cell.length_b            63.76 
_cell.length_c            99.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 28 A ALA 162 1_555 J CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc2 A SG CYS 49 A CYS 183 1_555 C CD CD . A CD 301 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc3 A O CYS 49 A CYS 183 1_555 D CD CD . A CD 302 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc4 A SG CYS 49 A CYS 183 1_555 D CD CD . A CD 302 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc5 A NE2 HIS 70 A HIS 204 1_555 E CD CD . A CD 303 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc6 A OE1 GLU 76 A GLU 210 1_555 E CD CD . A CD 303 4_456 ? ? ? ? L ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc7 A OE2 GLU 76 A GLU 210 1_555 E CD CD . A CD 303 4_456 ? ? ? ? L ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc8 C CD CD . A CD 301 1_555 S O HOH . A HOH 465 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc9 C CD CD . A CD 301 1_555 T O HOH . B HOH 430 2_564 ? L ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc10 D CD CD . A CD 302 1_555 S O HOH . A HOH 457 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc11 D CD CD . A CD 302 1_555 S O HOH . A HOH 462 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc12 D CD CD . A CD 302 1_555 T O HOH . B HOH 426 2_564 ? L ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc13 G CO CO . A CO 305 1_555 S O HOH . A HOH 409 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc14 B O PHE 34 B PHE 168 1_555 R NA NA . B NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc15 B OH TYR 51 B TYR 185 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc16 B SG CYS 106 B CYS 240 1_555 L CD CD . B CD 301 1_555 ? ? ? ? L ? ? ? ? ? ? ? 3.092 ? 
metalc ? metalc17 B OD1 ASP 124 B ASP 258 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc18 B OD2 ASP 124 B ASP 258 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc19 L CD CD . B CD 301 1_555 T O HOH . B HOH 434 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc20 N CD CD . B CD 303 1_555 T O HOH . B HOH 415 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc21 P CO CO . B CO 305 1_555 T O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     5C6C 
_atom_sites.fract_transf_matrix[1][1]    0.021409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 301 269 CD CD . 
D 2 CD A 1 302 270 CD CD . 
E 2 CD A 1 303 273 CD CD . 
F 3 CMP A 1 304 274 CMP CMP . 
G 4 CO A 1 305 275 CO CO . 
H 4 CO A 1 306 276 CO CO . 
I 4 CO A 1 307 277 CO CO . 
J 5 CA A 1 308 278 CA CA . 
K 6 EDO A 1 309 279 EDO EDO . 
L 2 CD B 1 301 271 CD CD . 
M 2 CD B 1 302 272 CD CD . 
N 2 CD B 1 303 268 CD CD . 
O 3 CMP B 1 304 269 CMP CMP . 
P 4 CO B 1 305 270 CO CO . 
Q 5 CA B 1 306 271 CA CA . 
R 7 NA B 1 307 272 NA NA . 
S 8 HOH A 1 401 328 HOH HOH . 
S 8 HOH A 2 402 348 HOH HOH . 
S 8 HOH A 3 403 287 HOH HOH . 
S 8 HOH A 4 404 296 HOH HOH . 
S 8 HOH A 5 405 298 HOH HOH . 
S 8 HOH A 6 406 305 HOH HOH . 
S 8 HOH A 7 407 291 HOH HOH . 
S 8 HOH A 8 408 292 HOH HOH . 
S 8 HOH A 9 409 283 HOH HOH . 
S 8 HOH A 10 410 330 HOH HOH . 
S 8 HOH A 11 411 294 HOH HOH . 
S 8 HOH A 12 412 316 HOH HOH . 
S 8 HOH A 13 413 299 HOH HOH . 
S 8 HOH A 14 414 281 HOH HOH . 
S 8 HOH A 15 415 339 HOH HOH . 
S 8 HOH A 16 416 288 HOH HOH . 
S 8 HOH A 17 417 284 HOH HOH . 
S 8 HOH A 18 418 343 HOH HOH . 
S 8 HOH A 19 419 336 HOH HOH . 
S 8 HOH A 20 420 347 HOH HOH . 
S 8 HOH A 21 421 344 HOH HOH . 
S 8 HOH A 22 422 314 HOH HOH . 
S 8 HOH A 23 423 313 HOH HOH . 
S 8 HOH A 24 424 306 HOH HOH . 
S 8 HOH A 25 425 332 HOH HOH . 
S 8 HOH A 26 426 337 HOH HOH . 
S 8 HOH A 27 427 323 HOH HOH . 
S 8 HOH A 28 428 318 HOH HOH . 
S 8 HOH A 29 429 301 HOH HOH . 
S 8 HOH A 30 430 286 HOH HOH . 
S 8 HOH A 31 431 303 HOH HOH . 
S 8 HOH A 32 432 309 HOH HOH . 
S 8 HOH A 33 433 282 HOH HOH . 
S 8 HOH A 34 434 310 HOH HOH . 
S 8 HOH A 35 435 302 HOH HOH . 
S 8 HOH A 36 436 346 HOH HOH . 
S 8 HOH A 37 437 285 HOH HOH . 
S 8 HOH A 38 438 311 HOH HOH . 
S 8 HOH A 39 439 321 HOH HOH . 
S 8 HOH A 40 440 338 HOH HOH . 
S 8 HOH A 41 441 307 HOH HOH . 
S 8 HOH A 42 442 329 HOH HOH . 
S 8 HOH A 43 443 324 HOH HOH . 
S 8 HOH A 44 444 300 HOH HOH . 
S 8 HOH A 45 445 322 HOH HOH . 
S 8 HOH A 46 446 317 HOH HOH . 
S 8 HOH A 47 447 315 HOH HOH . 
S 8 HOH A 48 448 297 HOH HOH . 
S 8 HOH A 49 449 293 HOH HOH . 
S 8 HOH A 50 450 295 HOH HOH . 
S 8 HOH A 51 451 349 HOH HOH . 
S 8 HOH A 52 452 319 HOH HOH . 
S 8 HOH A 53 453 304 HOH HOH . 
S 8 HOH A 54 454 334 HOH HOH . 
S 8 HOH A 55 455 333 HOH HOH . 
S 8 HOH A 56 456 331 HOH HOH . 
S 8 HOH A 57 457 280 HOH HOH . 
S 8 HOH A 58 458 325 HOH HOH . 
S 8 HOH A 59 459 320 HOH HOH . 
S 8 HOH A 60 460 345 HOH HOH . 
S 8 HOH A 61 461 298 HOH HOH . 
S 8 HOH A 62 462 290 HOH HOH . 
S 8 HOH A 63 463 312 HOH HOH . 
S 8 HOH A 64 464 340 HOH HOH . 
S 8 HOH A 65 465 296 HOH HOH . 
S 8 HOH A 66 466 335 HOH HOH . 
S 8 HOH A 67 467 327 HOH HOH . 
S 8 HOH A 68 468 308 HOH HOH . 
S 8 HOH A 69 469 342 HOH HOH . 
S 8 HOH A 70 470 302 HOH HOH . 
S 8 HOH A 71 471 326 HOH HOH . 
S 8 HOH A 72 472 341 HOH HOH . 
T 8 HOH B 1 401 286 HOH HOH . 
T 8 HOH B 2 402 282 HOH HOH . 
T 8 HOH B 3 403 276 HOH HOH . 
T 8 HOH B 4 404 274 HOH HOH . 
T 8 HOH B 5 405 278 HOH HOH . 
T 8 HOH B 6 406 275 HOH HOH . 
T 8 HOH B 7 407 293 HOH HOH . 
T 8 HOH B 8 408 283 HOH HOH . 
T 8 HOH B 9 409 277 HOH HOH . 
T 8 HOH B 10 410 295 HOH HOH . 
T 8 HOH B 11 411 284 HOH HOH . 
T 8 HOH B 12 412 291 HOH HOH . 
T 8 HOH B 13 413 280 HOH HOH . 
T 8 HOH B 14 414 304 HOH HOH . 
T 8 HOH B 15 415 285 HOH HOH . 
T 8 HOH B 16 416 281 HOH HOH . 
T 8 HOH B 17 417 299 HOH HOH . 
T 8 HOH B 18 418 287 HOH HOH . 
T 8 HOH B 19 419 301 HOH HOH . 
T 8 HOH B 20 420 294 HOH HOH . 
T 8 HOH B 21 421 306 HOH HOH . 
T 8 HOH B 22 422 290 HOH HOH . 
T 8 HOH B 23 423 305 HOH HOH . 
T 8 HOH B 24 424 300 HOH HOH . 
T 8 HOH B 25 425 279 HOH HOH . 
T 8 HOH B 26 426 273 HOH HOH . 
T 8 HOH B 27 427 288 HOH HOH . 
T 8 HOH B 28 428 307 HOH HOH . 
T 8 HOH B 29 429 297 HOH HOH . 
T 8 HOH B 30 430 292 HOH HOH . 
T 8 HOH B 31 431 289 HOH HOH . 
T 8 HOH B 32 432 308 HOH HOH . 
T 8 HOH B 33 433 303 HOH HOH . 
T 8 HOH B 34 434 289 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . F 3 12.535 25.719 55.483 1 18.21 ? P CMP 304 A 1 
HETATM 2 O O1P CMP . . . F 3 13.015 25.801 54.05 1 19.09 ? O1P CMP 304 A 1 
HETATM 3 O O2P CMP . . . F 3 13.453 26.177 56.603 1 22.18 ? O2P CMP 304 A 1 
HETATM 4 O O5' CMP . . . F 3 12.266 24.175 55.836 1 19.8 ? O5' CMP 304 A 1 
HETATM 5 C C5' CMP . . . F 3 11.39 23.788 56.886 1 20.75 ? C5' CMP 304 A 1 
HETATM 6 C C4' CMP . . . F 3 10.163 24.642 56.8 1 20.6 ? C4' CMP 304 A 1 
HETATM 7 O O4' CMP . . . F 3 9.275 24.485 57.925 1 26.03 ? O4' CMP 304 A 1 
HETATM 8 C C3' CMP . . . F 3 10.462 26.115 56.814 1 20.73 ? C3' CMP 304 A 1 
HETATM 9 O O3' CMP . . . F 3 11.109 26.493 55.617 1 17 ? O3' CMP 304 A 1 
HETATM 10 C C2' CMP . . . F 3 9.085 26.711 57.086 1 22.63 ? C2' CMP 304 A 1 
HETATM 11 O O2' CMP . . . F 3 8.28 26.697 55.918 1 21.66 ? O2' CMP 304 A 1 
HETATM 12 C C1' CMP . . . F 3 8.514 25.676 58.068 1 25 ? C1' CMP 304 A 1 
HETATM 13 N N9 CMP . . . F 3 8.608 26.116 59.47 1 30.94 ? N9 CMP 304 A 1 
HETATM 14 C C8 CMP . . . F 3 9.735 26.299 60.196 1 26.09 ? C8 CMP 304 A 1 
HETATM 15 N N7 CMP . . . F 3 9.424 26.689 61.465 1 31.63 ? N7 CMP 304 A 1 
HETATM 16 C C5 CMP . . . F 3 8.074 26.734 61.551 1 26.95 ? C5 CMP 304 A 1 
HETATM 17 C C6 CMP . . . F 3 7.076 27.07 62.595 1 26.12 ? C6 CMP 304 A 1 
HETATM 18 N N6 CMP . . . F 3 7.454 27.433 63.844 1 26.36 ? N6 CMP 304 A 1 
HETATM 19 N N1 CMP . . . F 3 5.775 26.994 62.265 1 26.71 ? N1 CMP 304 A 1 
HETATM 20 C C2 CMP . . . F 3 5.379 26.642 61.025 1 21.59 ? C2 CMP 304 A 1 
HETATM 21 N N3 CMP . . . F 3 6.214 26.314 60.028 1 23.25 ? N3 CMP 304 A 1 
HETATM 22 C C4 CMP . . . F 3 7.551 26.348 60.236 1 28.08 ? C4 CMP 304 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#