data_5C6C # _model_server_result.job_id 9-Irhsr70_bqlQJMkAu5sw _model_server_result.datetime_utc '2024-11-23 05:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":307}' # _entry.id 5C6C # _exptl.entry_id 5C6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C6C _cell.length_a 46.71 _cell.length_b 63.76 _cell.length_c 99.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,S 1 1 B,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 28 A ALA 162 1_555 J CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc2 A SG CYS 49 A CYS 183 1_555 C CD CD . A CD 301 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A O CYS 49 A CYS 183 1_555 D CD CD . A CD 302 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.535 ? metalc ? metalc4 A SG CYS 49 A CYS 183 1_555 D CD CD . A CD 302 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.79 ? metalc ? metalc5 A NE2 HIS 70 A HIS 204 1_555 E CD CD . A CD 303 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 A OE1 GLU 76 A GLU 210 1_555 E CD CD . A CD 303 4_456 ? ? ? ? L ? ? ? ? ? ? ? 2.473 ? metalc ? metalc7 A OE2 GLU 76 A GLU 210 1_555 E CD CD . A CD 303 4_456 ? ? ? ? L ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 C CD CD . A CD 301 1_555 S O HOH . A HOH 465 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc9 C CD CD . A CD 301 1_555 T O HOH . B HOH 430 2_564 ? L ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc10 D CD CD . A CD 302 1_555 S O HOH . A HOH 457 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc11 D CD CD . A CD 302 1_555 S O HOH . A HOH 462 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc12 D CD CD . A CD 302 1_555 T O HOH . B HOH 426 2_564 ? L ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc13 G CO CO . A CO 305 1_555 S O HOH . A HOH 409 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc14 B O PHE 34 B PHE 168 1_555 R NA NA . B NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc15 B OH TYR 51 B TYR 185 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc16 B SG CYS 106 B CYS 240 1_555 L CD CD . B CD 301 1_555 ? ? ? ? L ? ? ? ? ? ? ? 3.092 ? metalc ? metalc17 B OD1 ASP 124 B ASP 258 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc18 B OD2 ASP 124 B ASP 258 1_555 Q CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc19 L CD CD . B CD 301 1_555 T O HOH . B HOH 434 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc20 N CD CD . B CD 303 1_555 T O HOH . B HOH 415 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc21 P CO CO . B CO 305 1_555 T O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C6C _atom_sites.fract_transf_matrix[1][1] 0.021409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 269 CD CD . D 2 CD A 1 302 270 CD CD . E 2 CD A 1 303 273 CD CD . F 3 CMP A 1 304 274 CMP CMP . G 4 CO A 1 305 275 CO CO . H 4 CO A 1 306 276 CO CO . I 4 CO A 1 307 277 CO CO . J 5 CA A 1 308 278 CA CA . K 6 EDO A 1 309 279 EDO EDO . L 2 CD B 1 301 271 CD CD . M 2 CD B 1 302 272 CD CD . N 2 CD B 1 303 268 CD CD . O 3 CMP B 1 304 269 CMP CMP . P 4 CO B 1 305 270 CO CO . Q 5 CA B 1 306 271 CA CA . R 7 NA B 1 307 272 NA NA . S 8 HOH A 1 401 328 HOH HOH . S 8 HOH A 2 402 348 HOH HOH . S 8 HOH A 3 403 287 HOH HOH . S 8 HOH A 4 404 296 HOH HOH . S 8 HOH A 5 405 298 HOH HOH . S 8 HOH A 6 406 305 HOH HOH . S 8 HOH A 7 407 291 HOH HOH . S 8 HOH A 8 408 292 HOH HOH . S 8 HOH A 9 409 283 HOH HOH . S 8 HOH A 10 410 330 HOH HOH . S 8 HOH A 11 411 294 HOH HOH . S 8 HOH A 12 412 316 HOH HOH . S 8 HOH A 13 413 299 HOH HOH . S 8 HOH A 14 414 281 HOH HOH . S 8 HOH A 15 415 339 HOH HOH . S 8 HOH A 16 416 288 HOH HOH . S 8 HOH A 17 417 284 HOH HOH . S 8 HOH A 18 418 343 HOH HOH . S 8 HOH A 19 419 336 HOH HOH . S 8 HOH A 20 420 347 HOH HOH . S 8 HOH A 21 421 344 HOH HOH . S 8 HOH A 22 422 314 HOH HOH . S 8 HOH A 23 423 313 HOH HOH . S 8 HOH A 24 424 306 HOH HOH . S 8 HOH A 25 425 332 HOH HOH . S 8 HOH A 26 426 337 HOH HOH . S 8 HOH A 27 427 323 HOH HOH . S 8 HOH A 28 428 318 HOH HOH . S 8 HOH A 29 429 301 HOH HOH . S 8 HOH A 30 430 286 HOH HOH . S 8 HOH A 31 431 303 HOH HOH . S 8 HOH A 32 432 309 HOH HOH . S 8 HOH A 33 433 282 HOH HOH . S 8 HOH A 34 434 310 HOH HOH . S 8 HOH A 35 435 302 HOH HOH . S 8 HOH A 36 436 346 HOH HOH . S 8 HOH A 37 437 285 HOH HOH . S 8 HOH A 38 438 311 HOH HOH . S 8 HOH A 39 439 321 HOH HOH . S 8 HOH A 40 440 338 HOH HOH . S 8 HOH A 41 441 307 HOH HOH . S 8 HOH A 42 442 329 HOH HOH . S 8 HOH A 43 443 324 HOH HOH . S 8 HOH A 44 444 300 HOH HOH . S 8 HOH A 45 445 322 HOH HOH . S 8 HOH A 46 446 317 HOH HOH . S 8 HOH A 47 447 315 HOH HOH . S 8 HOH A 48 448 297 HOH HOH . S 8 HOH A 49 449 293 HOH HOH . S 8 HOH A 50 450 295 HOH HOH . S 8 HOH A 51 451 349 HOH HOH . S 8 HOH A 52 452 319 HOH HOH . S 8 HOH A 53 453 304 HOH HOH . S 8 HOH A 54 454 334 HOH HOH . S 8 HOH A 55 455 333 HOH HOH . S 8 HOH A 56 456 331 HOH HOH . S 8 HOH A 57 457 280 HOH HOH . S 8 HOH A 58 458 325 HOH HOH . S 8 HOH A 59 459 320 HOH HOH . S 8 HOH A 60 460 345 HOH HOH . S 8 HOH A 61 461 298 HOH HOH . S 8 HOH A 62 462 290 HOH HOH . S 8 HOH A 63 463 312 HOH HOH . S 8 HOH A 64 464 340 HOH HOH . S 8 HOH A 65 465 296 HOH HOH . S 8 HOH A 66 466 335 HOH HOH . S 8 HOH A 67 467 327 HOH HOH . S 8 HOH A 68 468 308 HOH HOH . S 8 HOH A 69 469 342 HOH HOH . S 8 HOH A 70 470 302 HOH HOH . S 8 HOH A 71 471 326 HOH HOH . S 8 HOH A 72 472 341 HOH HOH . T 8 HOH B 1 401 286 HOH HOH . T 8 HOH B 2 402 282 HOH HOH . T 8 HOH B 3 403 276 HOH HOH . T 8 HOH B 4 404 274 HOH HOH . T 8 HOH B 5 405 278 HOH HOH . T 8 HOH B 6 406 275 HOH HOH . T 8 HOH B 7 407 293 HOH HOH . T 8 HOH B 8 408 283 HOH HOH . T 8 HOH B 9 409 277 HOH HOH . T 8 HOH B 10 410 295 HOH HOH . T 8 HOH B 11 411 284 HOH HOH . T 8 HOH B 12 412 291 HOH HOH . T 8 HOH B 13 413 280 HOH HOH . T 8 HOH B 14 414 304 HOH HOH . T 8 HOH B 15 415 285 HOH HOH . T 8 HOH B 16 416 281 HOH HOH . T 8 HOH B 17 417 299 HOH HOH . T 8 HOH B 18 418 287 HOH HOH . T 8 HOH B 19 419 301 HOH HOH . T 8 HOH B 20 420 294 HOH HOH . T 8 HOH B 21 421 306 HOH HOH . T 8 HOH B 22 422 290 HOH HOH . T 8 HOH B 23 423 305 HOH HOH . T 8 HOH B 24 424 300 HOH HOH . T 8 HOH B 25 425 279 HOH HOH . T 8 HOH B 26 426 273 HOH HOH . T 8 HOH B 27 427 288 HOH HOH . T 8 HOH B 28 428 307 HOH HOH . T 8 HOH B 29 429 297 HOH HOH . T 8 HOH B 30 430 292 HOH HOH . T 8 HOH B 31 431 289 HOH HOH . T 8 HOH B 32 432 308 HOH HOH . T 8 HOH B 33 433 303 HOH HOH . T 8 HOH B 34 434 289 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 7 _atom_site.Cartn_x 9.482 _atom_site.Cartn_y 28.252 _atom_site.Cartn_z 65.346 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 307 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 458 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #