data_5C6E # _model_server_result.job_id aFO-RW5Z5uyTIHUsClBYtw _model_server_result.datetime_utc '2024-11-16 06:30:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5C6E # loop_ _exptl.entry_id _exptl.method 5C6E 'X-RAY DIFFRACTION' 5C6E 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.75 _cell.angle_gamma 90 _cell.entry_id 5C6E _cell.length_a 108.86 _cell.length_b 63.16 _cell.length_c 54.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 89.476737 0 51.161247 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5C6E _atom_sites.fract_transf_matrix[1][1] 0.009186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 142 HEM HEM . D 4 CYN A 1 202 142 CYN CYN . E 3 HEM B 1 201 347 HEM HEM . F 4 CYN B 1 202 347 CYN CYN . G 5 DOD A 1 301 1133 DOD DOD . G 5 DOD A 2 302 1048 DOD DOD . G 5 DOD A 3 303 1020 DOD DOD . G 5 DOD A 4 304 1021 DOD DOD . G 5 DOD A 5 305 1130 DOD DOD . G 5 DOD A 6 306 1040 DOD DOD . G 5 DOD A 7 307 1138 DOD DOD . G 5 DOD A 8 308 1010 DOD DOD . G 5 DOD A 9 309 1080 DOD DOD . G 5 DOD A 10 310 1002 DOD DOD . G 5 DOD A 11 311 1103 DOD DOD . G 5 DOD A 12 312 1018 DOD DOD . G 5 DOD A 13 313 1006 DOD DOD . G 5 DOD A 14 314 1058 DOD DOD . G 5 DOD A 15 315 1100 DOD DOD . G 5 DOD A 16 316 1013 DOD DOD . G 5 DOD A 17 317 1005 DOD DOD . G 5 DOD A 18 318 1008 DOD DOD . G 5 DOD A 19 319 1056 DOD DOD . G 5 DOD A 20 320 1017 DOD DOD . G 5 DOD A 21 321 1070 DOD DOD . G 5 DOD A 22 322 1038 DOD DOD . G 5 DOD A 23 323 1114 DOD DOD . G 5 DOD A 24 324 1069 DOD DOD . G 5 DOD A 25 325 1014 DOD DOD . G 5 DOD A 26 326 1135 DOD DOD . G 5 DOD A 27 327 1097 DOD DOD . G 5 DOD A 28 328 1131 DOD DOD . G 5 DOD A 29 329 1029 DOD DOD . G 5 DOD A 30 330 1075 DOD DOD . G 5 DOD A 31 331 1096 DOD DOD . G 5 DOD A 32 332 1068 DOD DOD . G 5 DOD A 33 333 1132 DOD DOD . G 5 DOD A 34 334 1004 DOD DOD . G 5 DOD A 35 335 1119 DOD DOD . G 5 DOD A 36 336 1129 DOD DOD . G 5 DOD A 37 337 1099 DOD DOD . G 5 DOD A 38 338 1076 DOD DOD . G 5 DOD A 39 339 1085 DOD DOD . G 5 DOD A 40 340 1050 DOD DOD . G 5 DOD A 41 341 1054 DOD DOD . G 5 DOD A 42 342 1116 DOD DOD . G 5 DOD A 43 343 1067 DOD DOD . G 5 DOD A 44 344 1073 DOD DOD . G 5 DOD A 45 345 1044 DOD DOD . G 5 DOD A 46 346 1121 DOD DOD . G 5 DOD A 47 347 1015 DOD DOD . G 5 DOD A 48 348 1016 DOD DOD . G 5 DOD A 49 349 1047 DOD DOD . G 5 DOD A 50 350 1118 DOD DOD . G 5 DOD A 51 351 1078 DOD DOD . G 5 DOD A 52 352 1022 DOD DOD . G 5 DOD A 53 353 1094 DOD DOD . G 5 DOD A 54 354 1109 DOD DOD . G 5 DOD A 55 355 1088 DOD DOD . G 5 DOD A 56 356 1032 DOD DOD . G 5 DOD A 57 357 1140 DOD DOD . G 5 DOD A 58 358 1090 DOD DOD . G 5 DOD A 59 359 1092 DOD DOD . G 5 DOD A 60 360 1095 DOD DOD . G 5 DOD A 61 361 1065 DOD DOD . G 5 DOD A 62 362 1091 DOD DOD . H 5 DOD B 1 301 1031 DOD DOD . H 5 DOD B 2 302 1102 DOD DOD . H 5 DOD B 3 303 1128 DOD DOD . H 5 DOD B 4 304 1074 DOD DOD . H 5 DOD B 5 305 1127 DOD DOD . H 5 DOD B 6 306 1077 DOD DOD . H 5 DOD B 7 307 1027 DOD DOD . H 5 DOD B 8 308 1035 DOD DOD . H 5 DOD B 9 309 1033 DOD DOD . H 5 DOD B 10 310 1072 DOD DOD . H 5 DOD B 11 311 1003 DOD DOD . H 5 DOD B 12 312 1063 DOD DOD . H 5 DOD B 13 313 1043 DOD DOD . H 5 DOD B 14 314 1105 DOD DOD . H 5 DOD B 15 315 1060 DOD DOD . H 5 DOD B 16 316 1083 DOD DOD . H 5 DOD B 17 317 1045 DOD DOD . H 5 DOD B 18 318 1120 DOD DOD . H 5 DOD B 19 319 1030 DOD DOD . H 5 DOD B 20 320 1055 DOD DOD . H 5 DOD B 21 321 1023 DOD DOD . H 5 DOD B 22 322 1011 DOD DOD . H 5 DOD B 23 323 1101 DOD DOD . H 5 DOD B 24 324 1062 DOD DOD . H 5 DOD B 25 325 1009 DOD DOD . H 5 DOD B 26 326 1059 DOD DOD . H 5 DOD B 27 327 1036 DOD DOD . H 5 DOD B 28 328 1049 DOD DOD . H 5 DOD B 29 329 1111 DOD DOD . H 5 DOD B 30 330 1039 DOD DOD . H 5 DOD B 31 331 1025 DOD DOD . H 5 DOD B 32 332 1007 DOD DOD . H 5 DOD B 33 333 1046 DOD DOD . H 5 DOD B 34 334 1041 DOD DOD . H 5 DOD B 35 335 1053 DOD DOD . H 5 DOD B 36 336 1061 DOD DOD . H 5 DOD B 37 337 1026 DOD DOD . H 5 DOD B 38 338 1123 DOD DOD . H 5 DOD B 39 339 1051 DOD DOD . H 5 DOD B 40 340 1066 DOD DOD . H 5 DOD B 41 341 1037 DOD DOD . H 5 DOD B 42 342 1019 DOD DOD . H 5 DOD B 43 343 1057 DOD DOD . H 5 DOD B 44 344 1052 DOD DOD . H 5 DOD B 45 345 1024 DOD DOD . H 5 DOD B 46 346 1042 DOD DOD . H 5 DOD B 47 347 1079 DOD DOD . H 5 DOD B 48 348 1139 DOD DOD . H 5 DOD B 49 349 1034 DOD DOD . H 5 DOD B 50 350 1028 DOD DOD . H 5 DOD B 51 351 1087 DOD DOD . H 5 DOD B 52 352 1084 DOD DOD . H 5 DOD B 53 353 1071 DOD DOD . H 5 DOD B 54 354 1136 DOD DOD . H 5 DOD B 55 355 1082 DOD DOD . H 5 DOD B 56 356 1012 DOD DOD . H 5 DOD B 57 357 1086 DOD DOD . H 5 DOD B 58 358 1137 DOD DOD . H 5 DOD B 59 359 1081 DOD DOD . H 5 DOD B 60 360 1093 DOD DOD . H 5 DOD B 61 361 1134 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . D 4 37.589 -7.598 8.339 1 27.76 ? C CYN 202 A 1 HETATM 2 N N CYN . . . D 4 36.689 -6.872 8.12 1 31.8 ? N CYN 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 2 #