data_5C6I # _model_server_result.job_id qAx4Ngi516Vf9U-M_fVqag _model_server_result.datetime_utc '2024-10-19 05:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5C6I # _exptl.entry_id 5C6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C6I _cell.length_a 79.2 _cell.length_b 79.2 _cell.length_c 39.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 B N1 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.366 ? metalc ? metalc2 B N2 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.302 ? metalc ? metalc3 B N4 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 B O1 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 B O3 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc6 B O5 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 B O7 DO3 . A DO3 201 1_555 H GD GD . A GD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 C N1 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.496 ? metalc ? metalc9 C N2 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc10 C N3 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc11 C N4 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc12 C O1 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc13 C O3 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc14 C O5 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc15 C O7 DO3 . A DO3 202 1_555 I GD GD . A GD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc16 H GD GD . A GD 207 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'C17 H32 N4 O7' _chem_comp.formula_weight 404.459 _chem_comp.id DO3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DO3 sing 83 n n N1 C8 DO3 sing 84 n n N1 C10 DO3 sing 85 n n N2 C2 DO3 sing 86 n n N2 C3 DO3 sing 87 n n N2 C12 DO3 sing 88 n n N3 C4 DO3 sing 89 n n N3 C5 DO3 sing 90 n n N3 C14 DO3 sing 91 n n N4 C6 DO3 sing 92 n n N4 C7 DO3 sing 93 n n N4 C16 DO3 sing 94 n n O1 C9 DO3 sing 95 n n O1 HO1 DO3 sing 96 n n O3 C11 DO3 sing 97 n n O3 HO3 DO3 sing 98 n n O5 C13 DO3 sing 99 n n O5 HO5 DO3 sing 100 n n O7 C15 DO3 sing 101 n n O7 HO7 DO3 sing 102 n n C1 C2 DO3 sing 103 n n C1 HC11 DO3 sing 104 n n C1 HC12 DO3 sing 105 n n C2 HC21 DO3 sing 106 n n C2 HC22 DO3 sing 107 n n C3 C4 DO3 sing 108 n n C3 HC31 DO3 sing 109 n n C3 HC32 DO3 sing 110 n n C4 HC41 DO3 sing 111 n n C4 HC42 DO3 sing 112 n n C5 C6 DO3 sing 113 n n C5 HC51 DO3 sing 114 n n C5 HC52 DO3 sing 115 n n C6 HC61 DO3 sing 116 n n C6 HC62 DO3 sing 117 n n C7 C8 DO3 sing 118 n n C7 HC71 DO3 sing 119 n n C7 HC72 DO3 sing 120 n n C8 HC81 DO3 sing 121 n n C8 HC82 DO3 sing 122 n n C9 C10 DO3 sing 123 n n C9 O2 DO3 doub 124 n n C10 H101 DO3 sing 125 n n C10 H102 DO3 sing 126 n n C11 C12 DO3 sing 127 n n C11 O4 DO3 doub 128 n n C12 H121 DO3 sing 129 n n C12 H122 DO3 sing 130 n n C13 C14 DO3 sing 131 n n C13 O6 DO3 doub 132 n n C14 H141 DO3 sing 133 n n C14 H142 DO3 sing 134 n n C15 C16 DO3 sing 135 n n C15 C17 DO3 sing 136 n n C15 HA DO3 sing 137 n n C16 H161 DO3 sing 138 n n C16 H162 DO3 sing 139 n n C17 H171 DO3 sing 140 n n C17 H172 DO3 sing 141 n n C17 H173 DO3 sing 142 n n # _atom_sites.entry_id 5C6I _atom_sites.fract_transf_matrix[1][1] 0.012626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DO3 A 1 201 284 DO3 DO3 . C 2 DO3 A 1 202 285 DO3 DO3 . D 3 CL A 1 203 286 CL CL . E 3 CL A 1 204 287 CL CL . F 3 CL A 1 205 288 CL CL . G 3 CL A 1 206 289 CL CL . H 4 GD A 1 207 290 GD GD . I 4 GD A 1 208 291 GD GD . J 5 HOH A 1 301 13 HOH HOH . J 5 HOH A 2 302 20 HOH HOH . J 5 HOH A 3 303 14 HOH HOH . J 5 HOH A 4 304 10 HOH HOH . J 5 HOH A 5 305 3 HOH HOH . J 5 HOH A 6 306 19 HOH HOH . J 5 HOH A 7 307 8 HOH HOH . J 5 HOH A 8 308 5 HOH HOH . J 5 HOH A 9 309 1 HOH HOH . J 5 HOH A 10 310 7 HOH HOH . J 5 HOH A 11 311 9 HOH HOH . J 5 HOH A 12 312 26 HOH HOH . J 5 HOH A 13 313 6 HOH HOH . J 5 HOH A 14 314 2 HOH HOH . J 5 HOH A 15 315 18 HOH HOH . J 5 HOH A 16 316 17 HOH HOH . J 5 HOH A 17 317 24 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 11 HOH HOH . J 5 HOH A 20 320 4 HOH HOH . J 5 HOH A 21 321 23 HOH HOH . J 5 HOH A 22 322 15 HOH HOH . J 5 HOH A 23 323 16 HOH HOH . J 5 HOH A 24 324 21 HOH HOH . J 5 HOH A 25 325 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DO3 . . . B 2 -26.265 2.414 4.731 1 48.57 ? N1 DO3 201 A 1 HETATM 2 N N2 DO3 . . . B 2 -26.133 4.251 8.165 1 46.33 ? N2 DO3 201 A 1 HETATM 3 N N3 DO3 . . . B 2 -22.632 3.184 9.03 1 49.94 ? N3 DO3 201 A 1 HETATM 4 N N4 DO3 . . . B 2 -23.38 1.314 6.004 1 45.1 ? N4 DO3 201 A 1 HETATM 5 O O1 DO3 . . . B 2 -27.579 0.276 6.718 1 52.3 ? O1 DO3 201 A 1 HETATM 6 O O3 DO3 . . . B 2 -26.872 1.683 9.572 1 39.27 ? O3 DO3 201 A 1 HETATM 7 O O5 DO3 . . . B 2 -24.123 0.684 9.514 1 51.98 ? O5 DO3 201 A 1 HETATM 8 O O7 DO3 . . . B 2 -24.812 -0.884 6.75 1 41.48 ? O7 DO3 201 A 1 HETATM 9 C C1 DO3 . . . B 2 -26.829 3.184 5.887 1 47.86 ? C1 DO3 201 A 1 HETATM 10 C C2 DO3 . . . B 2 -25.771 3.807 6.792 1 47.6 ? C2 DO3 201 A 1 HETATM 11 C C3 DO3 . . . B 2 -25.048 4.024 9.151 1 47.62 ? C3 DO3 201 A 1 HETATM 12 C C4 DO3 . . . B 2 -23.616 4.248 8.644 1 48.48 ? C4 DO3 201 A 1 HETATM 13 C C5 DO3 . . . B 2 -22.147 2.186 8.02 1 48.52 ? C5 DO3 201 A 1 HETATM 14 C C6 DO3 . . . B 2 -22.463 2.355 6.526 1 47.74 ? C6 DO3 201 A 1 HETATM 15 C C7 DO3 . . . B 2 -23.751 1.63 4.604 1 46.24 ? C7 DO3 201 A 1 HETATM 16 C C8 DO3 . . . B 2 -24.831 2.703 4.38 1 47.05 ? C8 DO3 201 A 1 HETATM 17 C C9 DO3 . . . B 2 -27.808 0.565 5.526 1 51.94 ? C9 DO3 201 A 1 HETATM 18 C C10 DO3 . . . B 2 -26.638 0.977 4.659 1 50.41 ? C10 DO3 201 A 1 HETATM 19 C C11 DO3 . . . B 2 -27.5 2.754 9.742 1 44.67 ? C11 DO3 201 A 1 HETATM 20 C C12 DO3 . . . B 2 -27.466 3.877 8.71 1 44.87 ? C12 DO3 201 A 1 HETATM 21 C C13 DO3 . . . B 2 -23.43 1.165 10.44 1 52.07 ? C13 DO3 201 A 1 HETATM 22 C C14 DO3 . . . B 2 -22.884 2.586 10.381 1 49.85 ? C14 DO3 201 A 1 HETATM 23 C C15 DO3 . . . B 2 -23.676 -1.163 5.935 1 42.94 ? C15 DO3 201 A 1 HETATM 24 C C16 DO3 . . . B 2 -22.689 0 6.014 1 44.44 ? C16 DO3 201 A 1 HETATM 25 C C17 DO3 . . . B 2 -23.041 -2.472 6.381 1 43.1 ? C17 DO3 201 A 1 HETATM 26 O O2 DO3 . . . B 2 -28.95 0.515 5.025 1 53.78 ? O2 DO3 201 A 1 HETATM 27 O O4 DO3 . . . B 2 -28.194 2.944 10.765 1 44.85 ? O4 DO3 201 A 1 HETATM 28 O O6 DO3 . . . B 2 -23.164 0.497 11.46 1 51.18 ? O6 DO3 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #