data_5C6P
#
_model_server_result.job_id            '_eH3EMleAlNV-5iMRq_OPg' 
_model_server_result.datetime_utc      '2024-11-16 05:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c6p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5C6P 
#
_exptl.entry_id    5C6P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.602 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-(3,4-dimethoxyphenyl)-5-{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino}-2-(propan-2-yl)pentanenitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5C6P 
_cell.length_a            117.642 
_cell.length_b            117.642 
_cell.length_c            225.989 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C6P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H38 N2 O4' 
_chem_comp.formula_weight    454.602 
_chem_comp.id                4YH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-(3,4-dimethoxyphenyl)-5-{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino}-2-(propan-2-yl)pentanenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 O20 4YH sing 1 n n 
O20 C7 4YH sing 2 n n 
C7 C12 4YH doub 3 n y 
C7 C10 4YH sing 4 n y 
C12 C17 4YH sing 5 n y 
O24 C10 4YH sing 6 n n 
O24 C33 4YH sing 7 n n 
C10 C14 4YH doub 8 n y 
C17 C21 4YH sing 9 n n 
C17 C18 4YH doub 10 n y 
C21 C16 4YH sing 11 n n 
C16 N8 4YH sing 12 n n 
C14 C18 4YH sing 13 n y 
C27 N8 4YH sing 14 n n 
N8 C25 4YH sing 15 n n 
N4 C3 4YH trip 16 n n 
C30 O19 4YH sing 17 n n 
C25 C26 4YH sing 18 n n 
C3 C1 4YH sing 19 n n 
C22 C26 4YH sing 20 n n 
C22 C1 4YH sing 21 n n 
O19 C6 4YH sing 22 n n 
C5 C6 4YH doub 23 n y 
C5 C2 4YH sing 24 n y 
C1 C2 4YH sing 25 n n 
C1 C15 4YH sing 26 n n 
C6 C9 4YH sing 27 n y 
C2 C11 4YH doub 28 n y 
C29 C15 4YH sing 29 n n 
C15 C28 4YH sing 30 n n 
C9 O23 4YH sing 31 n n 
C9 C13 4YH doub 32 n y 
C11 C13 4YH sing 33 n y 
O23 C32 4YH sing 34 n n 
C30 H1 4YH sing 35 n n 
C30 H2 4YH sing 36 n n 
C30 H3 4YH sing 37 n n 
C5 H4 4YH sing 38 n n 
C32 H5 4YH sing 39 n n 
C32 H6 4YH sing 40 n n 
C32 H7 4YH sing 41 n n 
C13 H8 4YH sing 42 n n 
C11 H9 4YH sing 43 n n 
C15 H10 4YH sing 44 n n 
C29 H11 4YH sing 45 n n 
C29 H12 4YH sing 46 n n 
C29 H13 4YH sing 47 n n 
C28 H14 4YH sing 48 n n 
C28 H15 4YH sing 49 n n 
C28 H16 4YH sing 50 n n 
C22 H17 4YH sing 51 n n 
C22 H18 4YH sing 52 n n 
C26 H19 4YH sing 53 n n 
C26 H20 4YH sing 54 n n 
C25 H21 4YH sing 55 n n 
C25 H22 4YH sing 56 n n 
C27 H24 4YH sing 57 n n 
C27 H25 4YH sing 58 n n 
C27 H26 4YH sing 59 n n 
C16 H27 4YH sing 60 n n 
C16 H28 4YH sing 61 n n 
C21 H29 4YH sing 62 n n 
C21 H30 4YH sing 63 n n 
C12 H31 4YH sing 64 n n 
C18 H32 4YH sing 65 n n 
C14 H33 4YH sing 66 n n 
C33 H34 4YH sing 67 n n 
C33 H35 4YH sing 68 n n 
C33 H36 4YH sing 69 n n 
C31 H37 4YH sing 70 n n 
C31 H38 4YH sing 71 n n 
C31 H39 4YH sing 72 n n 
#
_atom_sites.entry_id                     5C6P 
_atom_sites.fract_transf_matrix[1][1]    0.0085 
_atom_sites.fract_transf_matrix[1][2]    0.004907 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           4YH 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     601 
_pdbx_nonpoly_scheme.pdb_mon_id       4YH 
_pdbx_nonpoly_scheme.auth_mon_id      VRP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C30 4YH . . . C 3 23.219 -49.018 34.993 1 232.91 ? C30 4YH 601 A 1 
HETATM 2 O O19 4YH . . . C 3 24.402 -48.695 34.244 1 254.28 ? O19 4YH 601 A 1 
HETATM 3 C C6 4YH . . . C 3 24.25 -47.57 33.479 1 271.47 ? C6 4YH 601 A 1 
HETATM 4 C C5 4YH . . . C 3 24.483 -46.29 33.976 1 272.91 ? C5 4YH 601 A 1 
HETATM 5 C C9 4YH . . . C 3 23.852 -47.736 32.149 1 282.64 ? C9 4YH 601 A 1 
HETATM 6 O O23 4YH . . . C 3 23.648 -49.021 31.718 1 269.91 ? O23 4YH 601 A 1 
HETATM 7 C C32 4YH . . . C 3 22.296 -49.301 31.315 1 264.29 ? C32 4YH 601 A 1 
HETATM 8 C C13 4YH . . . C 3 23.687 -46.622 31.321 1 281.06 ? C13 4YH 601 A 1 
HETATM 9 C C11 4YH . . . C 3 23.922 -45.343 31.816 1 277.73 ? C11 4YH 601 A 1 
HETATM 10 C C2 4YH . . . C 3 24.326 -45.17 33.144 1 274.87 ? C2 4YH 601 A 1 
HETATM 11 C C1 4YH . . . C 3 24.56 -43.89 33.655 1 269.61 ? C1 4YH 601 A 1 
HETATM 12 C C15 4YH . . . C 3 26.09 -43.534 33.695 1 269.15 ? C15 4YH 601 A 1 
HETATM 13 C C29 4YH . . . C 3 27.042 -44.662 33.153 1 267.46 ? C29 4YH 601 A 1 
HETATM 14 C C28 4YH . . . C 3 26.534 -43.174 35.141 1 268.89 ? C28 4YH 601 A 1 
HETATM 15 C C3 4YH . . . C 3 23.931 -43.86 35.029 1 288.45 ? C3 4YH 601 A 1 
HETATM 16 N N4 4YH . . . C 3 23.187 -43.852 35.969 1 314.6 ? N4 4YH 601 A 1 
HETATM 17 C C22 4YH . . . C 3 23.86 -42.857 32.723 1 241.57 ? C22 4YH 601 A 1 
HETATM 18 C C26 4YH . . . C 3 23.394 -41.554 33.403 1 209.97 ? C26 4YH 601 A 1 
HETATM 19 C C25 4YH . . . C 3 21.906 -41.603 33.806 1 198.77 ? C25 4YH 601 A 1 
HETATM 20 N N8 4YH . . . C 3 20.923 -41.5 32.702 1 206.69 ? N8 4YH 601 A 1 
HETATM 21 C C27 4YH . . . C 3 21.123 -40.354 31.797 1 198.63 ? C27 4YH 601 A 1 
HETATM 22 C C16 4YH . . . C 3 20.732 -42.766 31.959 1 218.69 ? C16 4YH 601 A 1 
HETATM 23 C C21 4YH . . . C 3 19.243 -43.111 31.746 1 228.32 ? C21 4YH 601 A 1 
HETATM 24 C C17 4YH . . . C 3 19.011 -44.498 31.78 1 227.44 ? C17 4YH 601 A 1 
HETATM 25 C C12 4YH . . . C 3 19.102 -45.201 32.981 1 220.58 ? C12 4YH 601 A 1 
HETATM 26 C C18 4YH . . . C 3 18.665 -45.199 30.618 1 222.52 ? C18 4YH 601 A 1 
HETATM 27 C C14 4YH . . . C 3 18.426 -46.585 30.652 1 214.49 ? C14 4YH 601 A 1 
HETATM 28 C C10 4YH . . . C 3 18.512 -47.296 31.861 1 194.26 ? C10 4YH 601 A 1 
HETATM 29 O O24 4YH . . . C 3 18.307 -48.667 31.963 1 156.72 ? O24 4YH 601 A 1 
HETATM 30 C C33 4YH . . . C 3 16.951 -49.141 31.952 1 118.31 ? C33 4YH 601 A 1 
HETATM 31 C C7 4YH . . . C 3 18.866 -46.582 33.021 1 204.06 ? C7 4YH 601 A 1 
HETATM 32 O O20 4YH . . . C 3 18.968 -47.259 34.196 1 195.81 ? O20 4YH 601 A 1 
HETATM 33 C C31 4YH . . . C 3 19.883 -46.568 35.068 1 179.12 ? C31 4YH 601 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#