data_5C78 # _model_server_result.job_id tfauM9wX-FS7AKFsSSRCPA _model_server_result.datetime_utc '2024-12-23 05:18:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5C78 # _exptl.entry_id 5C78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 68.44 _cell.angle_beta 73.27 _cell.angle_gamma 68.67 _cell.entry_id 5C78 _cell.length_a 96.6 _cell.length_b 114.42 _cell.length_c 145.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I,J,M 1 1 B,C,F,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5C78 _atom_sites.fract_transf_matrix[1][1] 0.010352 _atom_sites.fract_transf_matrix[1][2] -0.004043 _atom_sites.fract_transf_matrix[1][3] -0.00201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009382 _atom_sites.fract_transf_matrix[2][3] -0.002892 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1PE A 1 601 1266 1PE 1PE . F 2 1PE B 1 601 1268 1PE 1PE . G 2 1PE B 1 602 1269 1PE 1PE . H 2 1PE C 1 601 1265 1PE 1PE . I 2 1PE D 1 601 1267 1PE 1PE . J 3 HOH A 1 701 10 HOH HOH . J 3 HOH A 2 702 16 HOH HOH . J 3 HOH A 3 703 12 HOH HOH . J 3 HOH A 4 704 99 HOH HOH . J 3 HOH A 5 705 18 HOH HOH . J 3 HOH A 6 706 24 HOH HOH . J 3 HOH A 7 707 3 HOH HOH . J 3 HOH A 8 708 23 HOH HOH . J 3 HOH A 9 709 22 HOH HOH . J 3 HOH A 10 710 5 HOH HOH . J 3 HOH A 11 711 4 HOH HOH . J 3 HOH A 12 712 21 HOH HOH . J 3 HOH A 13 713 8 HOH HOH . J 3 HOH A 14 714 11 HOH HOH . J 3 HOH A 15 715 114 HOH HOH . J 3 HOH A 16 716 14 HOH HOH . J 3 HOH A 17 717 95 HOH HOH . J 3 HOH A 18 718 9 HOH HOH . J 3 HOH A 19 719 15 HOH HOH . J 3 HOH A 20 720 7 HOH HOH . J 3 HOH A 21 721 19 HOH HOH . J 3 HOH A 22 722 103 HOH HOH . J 3 HOH A 23 723 86 HOH HOH . J 3 HOH A 24 724 6 HOH HOH . J 3 HOH A 25 725 109 HOH HOH . J 3 HOH A 26 726 116 HOH HOH . J 3 HOH A 27 727 2 HOH HOH . K 3 HOH B 1 701 32 HOH HOH . K 3 HOH B 2 702 39 HOH HOH . K 3 HOH B 3 703 30 HOH HOH . K 3 HOH B 4 704 48 HOH HOH . K 3 HOH B 5 705 107 HOH HOH . K 3 HOH B 6 706 50 HOH HOH . K 3 HOH B 7 707 108 HOH HOH . K 3 HOH B 8 708 53 HOH HOH . K 3 HOH B 9 709 51 HOH HOH . K 3 HOH B 10 710 42 HOH HOH . K 3 HOH B 11 711 28 HOH HOH . K 3 HOH B 12 712 34 HOH HOH . K 3 HOH B 13 713 54 HOH HOH . K 3 HOH B 14 714 26 HOH HOH . K 3 HOH B 15 715 47 HOH HOH . K 3 HOH B 16 716 115 HOH HOH . K 3 HOH B 17 717 45 HOH HOH . K 3 HOH B 18 718 113 HOH HOH . K 3 HOH B 19 719 40 HOH HOH . K 3 HOH B 20 720 27 HOH HOH . K 3 HOH B 21 721 33 HOH HOH . K 3 HOH B 22 722 49 HOH HOH . K 3 HOH B 23 723 25 HOH HOH . K 3 HOH B 24 724 105 HOH HOH . K 3 HOH B 25 725 31 HOH HOH . K 3 HOH B 26 726 112 HOH HOH . L 3 HOH C 1 701 38 HOH HOH . L 3 HOH C 2 702 56 HOH HOH . L 3 HOH C 3 703 62 HOH HOH . L 3 HOH C 4 704 55 HOH HOH . L 3 HOH C 5 705 68 HOH HOH . L 3 HOH C 6 706 58 HOH HOH . L 3 HOH C 7 707 46 HOH HOH . L 3 HOH C 8 708 52 HOH HOH . L 3 HOH C 9 709 65 HOH HOH . L 3 HOH C 10 710 43 HOH HOH . L 3 HOH C 11 711 61 HOH HOH . L 3 HOH C 12 712 41 HOH HOH . L 3 HOH C 13 713 67 HOH HOH . L 3 HOH C 14 714 57 HOH HOH . L 3 HOH C 15 715 44 HOH HOH . L 3 HOH C 16 716 60 HOH HOH . L 3 HOH C 17 717 63 HOH HOH . L 3 HOH C 18 718 36 HOH HOH . L 3 HOH C 19 719 37 HOH HOH . L 3 HOH C 20 720 64 HOH HOH . L 3 HOH C 21 721 66 HOH HOH . L 3 HOH C 22 722 59 HOH HOH . L 3 HOH C 23 723 106 HOH HOH . L 3 HOH C 24 724 29 HOH HOH . L 3 HOH C 25 725 111 HOH HOH . L 3 HOH C 26 726 110 HOH HOH . L 3 HOH C 27 727 35 HOH HOH . M 3 HOH D 1 701 93 HOH HOH . M 3 HOH D 2 702 72 HOH HOH . M 3 HOH D 3 703 91 HOH HOH . M 3 HOH D 4 704 79 HOH HOH . M 3 HOH D 5 705 71 HOH HOH . M 3 HOH D 6 706 17 HOH HOH . M 3 HOH D 7 707 77 HOH HOH . M 3 HOH D 8 708 92 HOH HOH . M 3 HOH D 9 709 87 HOH HOH . M 3 HOH D 10 710 101 HOH HOH . M 3 HOH D 11 711 81 HOH HOH . M 3 HOH D 12 712 90 HOH HOH . M 3 HOH D 13 713 83 HOH HOH . M 3 HOH D 14 714 73 HOH HOH . M 3 HOH D 15 715 98 HOH HOH . M 3 HOH D 16 716 97 HOH HOH . M 3 HOH D 17 717 84 HOH HOH . M 3 HOH D 18 718 88 HOH HOH . M 3 HOH D 19 719 13 HOH HOH . M 3 HOH D 20 720 89 HOH HOH . M 3 HOH D 21 721 96 HOH HOH . M 3 HOH D 22 722 85 HOH HOH . M 3 HOH D 23 723 104 HOH HOH . M 3 HOH D 24 724 74 HOH HOH . M 3 HOH D 25 725 82 HOH HOH . M 3 HOH D 26 726 76 HOH HOH . M 3 HOH D 27 727 20 HOH HOH . M 3 HOH D 28 728 102 HOH HOH . M 3 HOH D 29 729 94 HOH HOH . M 3 HOH D 30 730 70 HOH HOH . M 3 HOH D 31 731 80 HOH HOH . M 3 HOH D 32 732 100 HOH HOH . M 3 HOH D 33 733 78 HOH HOH . M 3 HOH D 34 734 69 HOH HOH . M 3 HOH D 35 735 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . I 2 168.069 131.418 75.414 1 70.06 ? OH2 1PE 601 D 1 HETATM 2 C C12 1PE . . . I 2 168.636 131.832 74.143 1 67.92 ? C12 1PE 601 D 1 HETATM 3 C C22 1PE . . . I 2 169.43 133.129 74.249 1 68.92 ? C22 1PE 601 D 1 HETATM 4 O OH3 1PE . . . I 2 170.411 133.086 75.332 1 67.98 ? OH3 1PE 601 D 1 HETATM 5 C C13 1PE . . . I 2 172.797 132.778 76.154 1 66.15 ? C13 1PE 601 D 1 HETATM 6 C C23 1PE . . . I 2 171.836 133.032 74.934 1 66.29 ? C23 1PE 601 D 1 HETATM 7 O OH4 1PE . . . I 2 172.403 133.64 77.299 1 66.18 ? OH4 1PE 601 D 1 HETATM 8 C C14 1PE . . . I 2 172.833 135.666 78.173 1 64.58 ? C14 1PE 601 D 1 HETATM 9 C C24 1PE . . . I 2 173.435 134.319 77.853 1 65.75 ? C24 1PE 601 D 1 HETATM 10 O OH5 1PE . . . I 2 172.681 135.713 79.602 1 64.14 ? OH5 1PE 601 D 1 HETATM 11 C C15 1PE . . . I 2 171.972 137.965 79.31 1 63.87 ? C15 1PE 601 D 1 HETATM 12 C C25 1PE . . . I 2 172.838 136.99 80.154 1 64.95 ? C25 1PE 601 D 1 HETATM 13 O OH6 1PE . . . I 2 172.853 138.768 78.562 1 65.34 ? OH6 1PE 601 D 1 HETATM 14 C C16 1PE . . . I 2 175.152 139.368 78.759 1 64.76 ? C16 1PE 601 D 1 HETATM 15 C C26 1PE . . . I 2 173.74 139.509 79.392 1 64.38 ? C26 1PE 601 D 1 HETATM 16 O OH7 1PE . . . I 2 175.756 140.604 78.994 1 62.91 ? OH7 1PE 601 D 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #