data_5C7C # _model_server_result.job_id U99F3pBpsJzAxp37e3cc8A _model_server_result.datetime_utc '2024-11-22 19:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5C7C # _exptl.entry_id 5C7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.853 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-4-[2-(6-chloro-3,3-dimethyl-2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]-2-methylpiperazin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C7C _cell.length_a 70.696 _cell.length_b 70.696 _cell.length_c 106.325 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A SG CYS 59 A CYS 303 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A NE2 HIS 76 A HIS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc4 A SG CYS 83 A CYS 327 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C17 H25 Cl N3 O 1' _chem_comp.formula_weight 322.853 _chem_comp.id 4YC _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-4-[2-(6-chloro-3,3-dimethyl-2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]-2-methylpiperazin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 4YC doub 1 n y C14 C13 4YC sing 2 n y C11 C10 4YC sing 3 n n C15 C16 4YC sing 4 n y C12 C10 4YC sing 5 n n C13 C10 4YC sing 6 n n C13 C19 4YC doub 7 n y C10 C9 4YC sing 8 n n C16 CL1 4YC sing 9 n n C16 C18 4YC doub 10 n y C19 C18 4YC sing 11 n y C19 N8 4YC sing 12 n n C9 N8 4YC sing 13 n n N8 C6 4YC sing 14 n n C6 O7 4YC doub 15 n n C6 C5 4YC sing 16 n n C5 N4 4YC sing 17 n n N4 C3 4YC sing 18 n n N4 C20 4YC sing 19 n n C3 C2 4YC sing 20 n n C20 C21 4YC sing 21 n n C2 C1 4YC sing 22 n n C2 N22 4YC sing 23 n n C21 N22 4YC sing 24 n n C1 H23 4YC sing 25 n n C1 H25 4YC sing 26 n n C1 H24 4YC sing 27 n n C2 H26 4YC sing 28 n n C3 H27 4YC sing 29 n n C3 H28 4YC sing 30 n n C5 H30 4YC sing 31 n n C5 H29 4YC sing 32 n n C11 H35 4YC sing 33 n n C11 H33 4YC sing 34 n n C11 H34 4YC sing 35 n n C12 H37 4YC sing 36 n n C12 H36 4YC sing 37 n n C12 H38 4YC sing 38 n n C14 H39 4YC sing 39 n n C15 H40 4YC sing 40 n n C21 H44 4YC sing 41 n n C21 H45 4YC sing 42 n n C9 H32 4YC sing 43 n n C9 H31 4YC sing 44 n n C18 H41 4YC sing 45 n n C20 H43 4YC sing 46 n n C20 H42 4YC sing 47 n n N22 H47 4YC sing 48 n n N22 H46 4YC sing 49 n n # _atom_sites.entry_id 5C7C _atom_sites.fract_transf_matrix[1][1] 0.014145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 4YC A 1 402 1 4YC L01 . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 105 HOH HOH . D 4 HOH A 3 503 55 HOH HOH . D 4 HOH A 4 504 97 HOH HOH . D 4 HOH A 5 505 74 HOH HOH . D 4 HOH A 6 506 64 HOH HOH . D 4 HOH A 7 507 79 HOH HOH . D 4 HOH A 8 508 52 HOH HOH . D 4 HOH A 9 509 81 HOH HOH . D 4 HOH A 10 510 25 HOH HOH . D 4 HOH A 11 511 30 HOH HOH . D 4 HOH A 12 512 20 HOH HOH . D 4 HOH A 13 513 1 HOH HOH . D 4 HOH A 14 514 54 HOH HOH . D 4 HOH A 15 515 1 HOH HOH . D 4 HOH A 16 516 27 HOH HOH . D 4 HOH A 17 517 26 HOH HOH . D 4 HOH A 18 518 34 HOH HOH . D 4 HOH A 19 519 9 HOH HOH . D 4 HOH A 20 520 35 HOH HOH . D 4 HOH A 21 521 48 HOH HOH . D 4 HOH A 22 522 29 HOH HOH . D 4 HOH A 23 523 60 HOH HOH . D 4 HOH A 24 524 85 HOH HOH . D 4 HOH A 25 525 40 HOH HOH . D 4 HOH A 26 526 39 HOH HOH . D 4 HOH A 27 527 6 HOH HOH . D 4 HOH A 28 528 14 HOH HOH . D 4 HOH A 29 529 8 HOH HOH . D 4 HOH A 30 530 19 HOH HOH . D 4 HOH A 31 531 45 HOH HOH . D 4 HOH A 32 532 12 HOH HOH . D 4 HOH A 33 533 31 HOH HOH . D 4 HOH A 34 534 77 HOH HOH . D 4 HOH A 35 535 11 HOH HOH . D 4 HOH A 36 536 51 HOH HOH . D 4 HOH A 37 537 2 HOH HOH . D 4 HOH A 38 538 33 HOH HOH . D 4 HOH A 39 539 59 HOH HOH . D 4 HOH A 40 540 22 HOH HOH . D 4 HOH A 41 541 62 HOH HOH . D 4 HOH A 42 542 80 HOH HOH . D 4 HOH A 43 543 46 HOH HOH . D 4 HOH A 44 544 92 HOH HOH . D 4 HOH A 45 545 37 HOH HOH . D 4 HOH A 46 546 4 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 47 HOH HOH . D 4 HOH A 49 549 10 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 3 HOH HOH . D 4 HOH A 52 552 43 HOH HOH . D 4 HOH A 53 553 16 HOH HOH . D 4 HOH A 54 554 78 HOH HOH . D 4 HOH A 55 555 109 HOH HOH . D 4 HOH A 56 556 28 HOH HOH . D 4 HOH A 57 557 75 HOH HOH . D 4 HOH A 58 558 65 HOH HOH . D 4 HOH A 59 559 21 HOH HOH . D 4 HOH A 60 560 23 HOH HOH . D 4 HOH A 61 561 18 HOH HOH . D 4 HOH A 62 562 61 HOH HOH . D 4 HOH A 63 563 91 HOH HOH . D 4 HOH A 64 564 41 HOH HOH . D 4 HOH A 65 565 7 HOH HOH . D 4 HOH A 66 566 15 HOH HOH . D 4 HOH A 67 567 3 HOH HOH . D 4 HOH A 68 568 67 HOH HOH . D 4 HOH A 69 569 53 HOH HOH . D 4 HOH A 70 570 84 HOH HOH . D 4 HOH A 71 571 68 HOH HOH . D 4 HOH A 72 572 89 HOH HOH . D 4 HOH A 73 573 32 HOH HOH . D 4 HOH A 74 574 42 HOH HOH . D 4 HOH A 75 575 111 HOH HOH . D 4 HOH A 76 576 44 HOH HOH . D 4 HOH A 77 577 5 HOH HOH . D 4 HOH A 78 578 101 HOH HOH . D 4 HOH A 79 579 95 HOH HOH . D 4 HOH A 80 580 94 HOH HOH . D 4 HOH A 81 581 86 HOH HOH . D 4 HOH A 82 582 38 HOH HOH . D 4 HOH A 83 583 100 HOH HOH . D 4 HOH A 84 584 93 HOH HOH . D 4 HOH A 85 585 63 HOH HOH . D 4 HOH A 86 586 98 HOH HOH . D 4 HOH A 87 587 2 HOH HOH . D 4 HOH A 88 588 36 HOH HOH . D 4 HOH A 89 589 13 HOH HOH . D 4 HOH A 90 590 72 HOH HOH . D 4 HOH A 91 591 66 HOH HOH . D 4 HOH A 92 592 96 HOH HOH . D 4 HOH A 93 593 90 HOH HOH . D 4 HOH A 94 594 56 HOH HOH . D 4 HOH A 95 595 69 HOH HOH . D 4 HOH A 96 596 76 HOH HOH . D 4 HOH A 97 597 57 HOH HOH . D 4 HOH A 98 598 73 HOH HOH . D 4 HOH A 99 599 83 HOH HOH . D 4 HOH A 100 600 17 HOH HOH . D 4 HOH A 101 601 102 HOH HOH . D 4 HOH A 102 602 87 HOH HOH . D 4 HOH A 103 603 82 HOH HOH . D 4 HOH A 104 604 112 HOH HOH . D 4 HOH A 105 605 88 HOH HOH . D 4 HOH A 106 606 24 HOH HOH . D 4 HOH A 107 607 58 HOH HOH . D 4 HOH A 108 608 108 HOH HOH . D 4 HOH A 109 609 70 HOH HOH . D 4 HOH A 110 610 103 HOH HOH . D 4 HOH A 111 611 110 HOH HOH . D 4 HOH A 112 612 99 HOH HOH . D 4 HOH A 113 613 106 HOH HOH . D 4 HOH A 114 614 104 HOH HOH . D 4 HOH A 115 615 71 HOH HOH . D 4 HOH A 116 616 113 HOH HOH . D 4 HOH A 117 617 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4YC . . . C 3 -15.252 -21.342 -0.649 0.92 29.21 ? C1 4YC 402 A 1 HETATM 2 C C2 4YC . . . C 3 -15.698 -19.98 -1.162 0.92 29.11 ? C2 4YC 402 A 1 HETATM 3 C C3 4YC . . . C 3 -15.657 -19.888 -2.684 0.92 29.36 ? C3 4YC 402 A 1 HETATM 4 N N4 4YC . . . C 3 -16.032 -18.55 -3.163 0.92 30.03 ? N4 4YC 402 A 1 HETATM 5 C C5 4YC . . . C 3 -16.167 -18.473 -4.627 0.92 30.16 ? C5 4YC 402 A 1 HETATM 6 C C6 4YC . . . C 3 -14.921 -18.796 -5.44 0.92 29.37 ? C6 4YC 402 A 1 HETATM 7 C C10 4YC . . . C 3 -15.948 -18.497 -9.011 0.92 33.7 ? C10 4YC 402 A 1 HETATM 8 C C11 4YC . . . C 3 -16.903 -19.262 -9.919 0.92 33.23 ? C11 4YC 402 A 1 HETATM 9 C C12 4YC . . . C 3 -15.945 -17.032 -9.423 0.92 34.2 ? C12 4YC 402 A 1 HETATM 10 C C13 4YC . . . C 3 -14.54 -19.064 -9.032 0.92 33.22 ? C13 4YC 402 A 1 HETATM 11 C C14 4YC . . . C 3 -13.746 -19.404 -10.113 0.92 37.67 ? C14 4YC 402 A 1 HETATM 12 C C15 4YC . . . C 3 -12.472 -19.913 -9.901 0.92 39.27 ? C15 4YC 402 A 1 HETATM 13 C C16 4YC . . . C 3 -12.005 -20.077 -8.612 0.92 39.46 ? C16 4YC 402 A 1 HETATM 14 C C19 4YC . . . C 3 -14.056 -19.235 -7.742 0.92 30.43 ? C19 4YC 402 A 1 HETATM 15 C C21 4YC . . . C 3 -15.172 -17.555 -1.082 0.92 29 ? C21 4YC 402 A 1 HETATM 16 O O7 4YC . . . C 3 -13.853 -19.025 -4.889 0.92 31.25 ? O7 4YC 402 A 1 HETATM 17 N N8 4YC . . . C 3 -15.045 -18.82 -6.818 0.92 30.78 ? N8 4YC 402 A 1 HETATM 18 C C9 4YC . . . C 3 -16.34 -18.654 -7.529 0.92 32.04 ? C9 4YC 402 A 1 HETATM 19 CL CL1 4YC . . . C 3 -10.406 -20.716 -8.356 0.92 43.16 ? CL1 4YC 402 A 1 HETATM 20 C C18 4YC . . . C 3 -12.784 -19.743 -7.521 0.92 34.41 ? C18 4YC 402 A 1 HETATM 21 C C20 4YC . . . C 3 -15.147 -17.519 -2.602 0.92 32.87 ? C20 4YC 402 A 1 HETATM 22 N N22 4YC . . . C 3 -14.806 -18.912 -0.596 0.92 32.13 1 N22 4YC 402 A 1 HETATM 23 H H23 4YC . . . C 3 -15.603 -22.041 -1.234 0.92 29.01 ? H23 4YC 402 A 1 HETATM 24 H H25 4YC . . . C 3 -14.276 -21.384 -0.642 0.92 29.03 ? H25 4YC 402 A 1 HETATM 25 H H24 4YC . . . C 3 -15.591 -21.476 0.257 0.92 28.3 ? H24 4YC 402 A 1 HETATM 26 H H26 4YC . . . C 3 -16.611 -19.797 -0.848 0.92 28.9 ? H26 4YC 402 A 1 HETATM 27 H H27 4YC . . . C 3 -16.27 -20.548 -3.063 0.92 29.37 ? H27 4YC 402 A 1 HETATM 28 H H28 4YC . . . C 3 -14.759 -20.101 -2.991 0.92 29 ? H28 4YC 402 A 1 HETATM 29 H H30 4YC . . . C 3 -16.878 -19.088 -4.9 0.92 27.51 ? H30 4YC 402 A 1 HETATM 30 H H29 4YC . . . C 3 -16.46 -17.566 -4.861 0.92 29.74 ? H29 4YC 402 A 1 HETATM 31 H H35 4YC . . . C 3 -16.531 -19.306 -10.822 0.92 32.98 ? H35 4YC 402 A 1 HETATM 32 H H33 4YC . . . C 3 -17.766 -18.805 -9.946 0.92 31.54 ? H33 4YC 402 A 1 HETATM 33 H H34 4YC . . . C 3 -17.027 -20.166 -9.576 0.92 32.11 ? H34 4YC 402 A 1 HETATM 34 H H37 4YC . . . C 3 -15.656 -16.954 -10.353 0.92 34.06 ? H37 4YC 402 A 1 HETATM 35 H H36 4YC . . . C 3 -16.845 -16.664 -9.331 0.92 34.06 ? H36 4YC 402 A 1 HETATM 36 H H38 4YC . . . C 3 -15.331 -16.532 -8.85 0.92 34.06 ? H38 4YC 402 A 1 HETATM 37 H H39 4YC . . . C 3 -14.07 -19.29 -10.992 0.92 36.7 ? H39 4YC 402 A 1 HETATM 38 H H40 4YC . . . C 3 -11.927 -20.146 -10.634 0.92 38.56 ? H40 4YC 402 A 1 HETATM 39 H H44 4YC . . . C 3 -16.067 -17.324 -0.761 0.92 30.47 ? H44 4YC 402 A 1 HETATM 40 H H45 4YC . . . C 3 -14.54 -16.9 -0.726 0.92 30.47 ? H45 4YC 402 A 1 HETATM 41 H H32 4YC . . . C 3 -16.91 -19.44 -7.398 0.92 30.61 ? H32 4YC 402 A 1 HETATM 42 H H31 4YC . . . C 3 -16.814 -17.86 -7.206 0.92 31.78 ? H31 4YC 402 A 1 HETATM 43 H H41 4YC . . . C 3 -12.456 -19.859 -6.648 0.92 34.43 ? H41 4YC 402 A 1 HETATM 44 H H43 4YC . . . C 3 -14.236 -17.666 -2.913 0.92 31.26 ? H43 4YC 402 A 1 HETATM 45 H H42 4YC . . . C 3 -15.437 -16.638 -2.911 0.92 31.27 ? H42 4YC 402 A 1 HETATM 46 H H47 4YC . . . C 3 -13.936 -19.089 -0.843 0.92 29.84 ? H47 4YC 402 A 1 HETATM 47 H H46 4YC . . . C 3 -14.85 -18.928 0.304 0.92 30.18 ? H46 4YC 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #