data_5C7X # _model_server_result.job_id MD3DXglQ-JtN61qV7rxhTQ _model_server_result.datetime_utc '2024-12-30 18:52:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5C7X # _exptl.entry_id 5C7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C7X _cell.length_a 71.602 _cell.length_b 97.493 _cell.length_c 192.512 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,M,O,P 1 1 B,E,F,K,L,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 54 B CYS 54 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 88 B CYS 88 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 144 H CYS 140 1_555 C SG CYS 200 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 D SG CYS 22 L CYS 23 1_555 D SG CYS 85 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 132 L CYS 134 1_555 D SG CYS 191 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 E SG CYS 22 M CYS 22 1_555 E SG CYS 98 M CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 E SG CYS 144 M CYS 140 1_555 E SG CYS 200 M CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 22 N CYS 23 1_555 F SG CYS 85 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 132 N CYS 134 1_555 F SG CYS 191 N CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 296 n n C1 C2 PGE sing 297 n n C1 H1 PGE sing 298 n n C1 H12 PGE sing 299 n n O1 HO1 PGE sing 300 n n C2 O2 PGE sing 301 n n C2 H2 PGE sing 302 n n C2 H22 PGE sing 303 n n O2 C3 PGE sing 304 n n C3 C4 PGE sing 305 n n C3 H3 PGE sing 306 n n C3 H32 PGE sing 307 n n C4 O3 PGE sing 308 n n C4 H4 PGE sing 309 n n C4 H42 PGE sing 310 n n O4 C6 PGE sing 311 n n O4 HO4 PGE sing 312 n n C6 C5 PGE sing 313 n n C6 H6 PGE sing 314 n n C6 H62 PGE sing 315 n n C5 O3 PGE sing 316 n n C5 H5 PGE sing 317 n n C5 H52 PGE sing 318 n n # _atom_sites.entry_id 5C7X _atom_sites.fract_transf_matrix[1][1] 0.013966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PGE H 1 301 4 PGE PGE . H 4 PGE H 1 302 5 PGE PGE . I 5 PEG L 1 301 3 PEG PEG . J 6 PG6 L 1 302 6 PG6 PG6 . K 5 PEG M 1 301 2 PEG PEG . L 5 PEG N 1 301 1 PEG PEG . M 7 HOH A 1 201 31 HOH HOH . M 7 HOH A 2 202 13 HOH HOH . M 7 HOH A 3 203 3 HOH HOH . M 7 HOH A 4 204 27 HOH HOH . M 7 HOH A 5 205 11 HOH HOH . M 7 HOH A 6 206 6 HOH HOH . N 7 HOH B 1 201 7 HOH HOH . N 7 HOH B 2 202 24 HOH HOH . N 7 HOH B 3 203 30 HOH HOH . N 7 HOH B 4 204 1 HOH HOH . O 7 HOH H 1 401 9 HOH HOH . O 7 HOH H 2 402 2 HOH HOH . O 7 HOH H 3 403 15 HOH HOH . O 7 HOH H 4 404 28 HOH HOH . O 7 HOH H 5 405 29 HOH HOH . O 7 HOH H 6 406 5 HOH HOH . O 7 HOH H 7 407 10 HOH HOH . O 7 HOH H 8 408 25 HOH HOH . O 7 HOH H 9 409 26 HOH HOH . O 7 HOH H 10 410 4 HOH HOH . O 7 HOH H 11 411 19 HOH HOH . P 7 HOH L 1 401 34 HOH HOH . P 7 HOH L 2 402 22 HOH HOH . P 7 HOH L 3 403 20 HOH HOH . P 7 HOH L 4 404 18 HOH HOH . P 7 HOH L 5 405 33 HOH HOH . P 7 HOH L 6 406 8 HOH HOH . Q 7 HOH M 1 401 32 HOH HOH . Q 7 HOH M 2 402 21 HOH HOH . Q 7 HOH M 3 403 16 HOH HOH . Q 7 HOH M 4 404 23 HOH HOH . R 7 HOH N 1 401 14 HOH HOH . R 7 HOH N 2 402 12 HOH HOH . R 7 HOH N 3 403 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 4 45.831 7.812 41.796 1 63.47 ? C1 PGE 301 H 1 HETATM 2 O O1 PGE . . . G 4 46.563 9.025 41.997 1 60.34 ? O1 PGE 301 H 1 HETATM 3 C C2 PGE . . . G 4 45.51 7.625 40.312 1 64.34 ? C2 PGE 301 H 1 HETATM 4 O O2 PGE . . . G 4 44.345 6.811 40.141 1 67.17 ? O2 PGE 301 H 1 HETATM 5 C C3 PGE . . . G 4 44.559 5.4 40.273 1 67.96 ? C3 PGE 301 H 1 HETATM 6 C C4 PGE . . . G 4 43.279 4.735 40.773 1 67.53 ? C4 PGE 301 H 1 HETATM 7 O O4 PGE . . . G 4 42.599 3.737 45.442 1 66.06 ? O4 PGE 301 H 1 HETATM 8 C C6 PGE . . . G 4 42.688 3.223 44.104 1 67.09 ? C6 PGE 301 H 1 HETATM 9 C C5 PGE . . . G 4 42.733 4.359 43.092 1 66.85 ? C5 PGE 301 H 1 HETATM 10 O O3 PGE . . . G 4 43.536 3.989 41.968 1 67.83 ? O3 PGE 301 H 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #