data_5C7X
#
_model_server_result.job_id            BP2nzkS4cXJ1Ft_QDVMTIA 
_model_server_result.datetime_utc      '2025-07-13 05:12:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c7x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    5C7X 
#
_exptl.entry_id    5C7X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.331 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C7X 
_cell.length_a            71.602 
_cell.length_b            97.493 
_cell.length_c            192.512 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C7X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,M,O,P 1 1 
B,E,F,K,L,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 B SG CYS 54 B CYS 54 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 88 B CYS 88 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 144 H CYS 140 1_555 C SG CYS 200 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 D SG CYS 22 L CYS 23 1_555 D SG CYS 85 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 D SG CYS 132 L CYS 134 1_555 D SG CYS 191 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 E SG CYS 22 M CYS 22 1_555 E SG CYS 98 M CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf10 E SG CYS 144 M CYS 140 1_555 E SG CYS 200 M CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 F SG CYS 22 N CYS 23 1_555 F SG CYS 85 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 F SG CYS 132 N CYS 134 1_555 F SG CYS 191 N CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C12 H26 O6' 
_chem_comp.formula_weight    266.331 
_chem_comp.id                PG6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG6 sing 253 n n 
C1 H11 PG6 sing 254 n n 
C1 H12 PG6 sing 255 n n 
C1 H13 PG6 sing 256 n n 
O1 C2 PG6 sing 257 n n 
C2 C3 PG6 sing 258 n n 
C2 H21 PG6 sing 259 n n 
C2 H22 PG6 sing 260 n n 
C3 O2 PG6 sing 261 n n 
C3 H31 PG6 sing 262 n n 
C3 H32 PG6 sing 263 n n 
O2 C4 PG6 sing 264 n n 
C4 C5 PG6 sing 265 n n 
C4 H41 PG6 sing 266 n n 
C4 H42 PG6 sing 267 n n 
C5 O3 PG6 sing 268 n n 
C5 H51 PG6 sing 269 n n 
C5 H52 PG6 sing 270 n n 
O3 C6 PG6 sing 271 n n 
C6 C7 PG6 sing 272 n n 
C6 H61 PG6 sing 273 n n 
C6 H62 PG6 sing 274 n n 
C7 O4 PG6 sing 275 n n 
C7 H71 PG6 sing 276 n n 
C7 H72 PG6 sing 277 n n 
O4 C8 PG6 sing 278 n n 
C8 C9 PG6 sing 279 n n 
C8 H81 PG6 sing 280 n n 
C8 H82 PG6 sing 281 n n 
C9 O5 PG6 sing 282 n n 
C9 H91 PG6 sing 283 n n 
C9 H92 PG6 sing 284 n n 
O5 C10 PG6 sing 285 n n 
C10 C11 PG6 sing 286 n n 
C10 H101 PG6 sing 287 n n 
C10 H102 PG6 sing 288 n n 
C11 O6 PG6 sing 289 n n 
C11 H111 PG6 sing 290 n n 
C11 H112 PG6 sing 291 n n 
O6 C12 PG6 sing 292 n n 
C12 H121 PG6 sing 293 n n 
C12 H122 PG6 sing 294 n n 
C12 H123 PG6 sing 295 n n 
#
_atom_sites.entry_id                     5C7X 
_atom_sites.fract_transf_matrix[1][1]    0.013966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 PGE H 1 301 4 PGE PGE . 
H 4 PGE H 1 302 5 PGE PGE . 
I 5 PEG L 1 301 3 PEG PEG . 
J 6 PG6 L 1 302 6 PG6 PG6 . 
K 5 PEG M 1 301 2 PEG PEG . 
L 5 PEG N 1 301 1 PEG PEG . 
M 7 HOH A 1 201 31 HOH HOH . 
M 7 HOH A 2 202 13 HOH HOH . 
M 7 HOH A 3 203 3 HOH HOH . 
M 7 HOH A 4 204 27 HOH HOH . 
M 7 HOH A 5 205 11 HOH HOH . 
M 7 HOH A 6 206 6 HOH HOH . 
N 7 HOH B 1 201 7 HOH HOH . 
N 7 HOH B 2 202 24 HOH HOH . 
N 7 HOH B 3 203 30 HOH HOH . 
N 7 HOH B 4 204 1 HOH HOH . 
O 7 HOH H 1 401 9 HOH HOH . 
O 7 HOH H 2 402 2 HOH HOH . 
O 7 HOH H 3 403 15 HOH HOH . 
O 7 HOH H 4 404 28 HOH HOH . 
O 7 HOH H 5 405 29 HOH HOH . 
O 7 HOH H 6 406 5 HOH HOH . 
O 7 HOH H 7 407 10 HOH HOH . 
O 7 HOH H 8 408 25 HOH HOH . 
O 7 HOH H 9 409 26 HOH HOH . 
O 7 HOH H 10 410 4 HOH HOH . 
O 7 HOH H 11 411 19 HOH HOH . 
P 7 HOH L 1 401 34 HOH HOH . 
P 7 HOH L 2 402 22 HOH HOH . 
P 7 HOH L 3 403 20 HOH HOH . 
P 7 HOH L 4 404 18 HOH HOH . 
P 7 HOH L 5 405 33 HOH HOH . 
P 7 HOH L 6 406 8 HOH HOH . 
Q 7 HOH M 1 401 32 HOH HOH . 
Q 7 HOH M 2 402 21 HOH HOH . 
Q 7 HOH M 3 403 16 HOH HOH . 
Q 7 HOH M 4 404 23 HOH HOH . 
R 7 HOH N 1 401 14 HOH HOH . 
R 7 HOH N 2 402 12 HOH HOH . 
R 7 HOH N 3 403 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PG6 . . . J 6 9.01 10.531 19.793 1 61.7 ? C1 PG6 302 L 1 
HETATM 2 O O1 PG6 . . . J 6 10.351 10.283 20.227 1 64.11 ? O1 PG6 302 L 1 
HETATM 3 C C2 PG6 . . . J 6 11.316 11.168 19.647 1 66.15 ? C2 PG6 302 L 1 
HETATM 4 C C3 PG6 . . . J 6 12.734 10.631 19.847 1 66.32 ? C3 PG6 302 L 1 
HETATM 5 O O2 PG6 . . . J 6 13.555 10.978 18.723 1 68.04 ? O2 PG6 302 L 1 
HETATM 6 C C4 PG6 . . . J 6 14.521 9.998 18.321 1 67.94 ? C4 PG6 302 L 1 
HETATM 7 C C5 PG6 . . . J 6 13.885 8.984 17.366 1 67.94 ? C5 PG6 302 L 1 
HETATM 8 O O3 PG6 . . . J 6 14.533 7.709 17.452 1 65.82 ? O3 PG6 302 L 1 
HETATM 9 C C6 PG6 . . . J 6 15.695 7.597 16.629 1 64.15 ? C6 PG6 302 L 1 
HETATM 10 C C7 PG6 . . . J 6 16.375 6.254 16.874 1 64.22 ? C7 PG6 302 L 1 
HETATM 11 O O4 PG6 . . . J 6 17.223 6.314 18.029 1 62.45 ? O4 PG6 302 L 1 
HETATM 12 C C8 PG6 . . . J 6 16.627 5.982 19.289 1 59.92 ? C8 PG6 302 L 1 
HETATM 13 C C9 PG6 . . . J 6 17.534 5.019 20.052 1 58.56 ? C9 PG6 302 L 1 
HETATM 14 O O5 PG6 . . . J 6 17.176 4.953 21.44 1 57.56 ? O5 PG6 302 L 1 
HETATM 15 C C10 PG6 . . . J 6 15.918 4.338 21.738 1 56.28 ? C10 PG6 302 L 1 
HETATM 16 C C11 PG6 . . . J 6 16.073 3.397 22.929 1 55.2 ? C11 PG6 302 L 1 
HETATM 17 O O6 PG6 . . . J 6 14.792 3.053 23.471 1 55.76 ? O6 PG6 302 L 1 
HETATM 18 C C12 PG6 . . . J 6 14.025 2.12 22.696 1 55.17 ? C12 PG6 302 L 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#