data_5C88 # _model_server_result.job_id vmrUMb0fcZcbfAmNJ-hH3Q _model_server_result.datetime_utc '2024-11-02 09:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 5C88 # _exptl.entry_id 5C88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.88 _cell.angle_gamma 90 _cell.entry_id 5C88 _cell.length_a 34.154 _cell.length_b 84.246 _cell.length_c 49.165 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5C88 _atom_sites.fract_transf_matrix[1][1] 0.029279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 300 300 COA COA . D 2 COA B 1 300 300 COA COA . E 3 HOH A 1 401 22 HOH HOH . E 3 HOH A 2 402 28 HOH HOH . E 3 HOH A 3 403 9 HOH HOH . E 3 HOH A 4 404 4 HOH HOH . E 3 HOH A 5 405 25 HOH HOH . E 3 HOH A 6 406 23 HOH HOH . E 3 HOH A 7 407 1 HOH HOH . E 3 HOH A 8 408 24 HOH HOH . E 3 HOH A 9 409 21 HOH HOH . E 3 HOH A 10 410 19 HOH HOH . E 3 HOH A 11 411 13 HOH HOH . E 3 HOH A 12 412 12 HOH HOH . F 3 HOH B 1 401 5 HOH HOH . F 3 HOH B 2 402 3 HOH HOH . F 3 HOH B 3 403 6 HOH HOH . F 3 HOH B 4 404 11 HOH HOH . F 3 HOH B 5 405 10 HOH HOH . F 3 HOH B 6 406 15 HOH HOH . F 3 HOH B 7 407 20 HOH HOH . F 3 HOH B 8 408 7 HOH HOH . F 3 HOH B 9 409 29 HOH HOH . F 3 HOH B 10 410 2 HOH HOH . F 3 HOH B 11 411 14 HOH HOH . F 3 HOH B 12 412 8 HOH HOH . F 3 HOH B 13 413 16 HOH HOH . F 3 HOH B 14 414 26 HOH HOH . F 3 HOH B 15 415 27 HOH HOH . F 3 HOH B 16 416 30 HOH HOH . F 3 HOH B 17 417 17 HOH HOH . F 3 HOH B 18 418 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 2 -45.432 -96.896 -18.428 1 58.25 ? N1A COA 300 A 1 HETATM 2 C C2A COA . . . C 2 -44.774 -95.908 -17.749 1 59.48 ? C2A COA 300 A 1 HETATM 3 N N3A COA . . . C 2 -43.42 -95.976 -17.563 1 59.13 ? N3A COA 300 A 1 HETATM 4 C C4A COA . . . C 2 -42.711 -97.036 -18.055 1 63.2 ? C4A COA 300 A 1 HETATM 5 C C5A COA . . . C 2 -43.354 -98.021 -18.723 1 62.98 ? C5A COA 300 A 1 HETATM 6 C C6A COA . . . C 2 -44.73 -97.942 -18.903 1 60.02 ? C6A COA 300 A 1 HETATM 7 N N6A COA . . . C 2 -45.888 -98.571 -19.452 1 53.51 ? N6A COA 300 A 1 HETATM 8 N N7A COA . . . C 2 -42.435 -98.952 -19.108 1 69 ? N7A COA 300 A 1 HETATM 9 C C8A COA . . . C 2 -41.22 -98.538 -18.669 1 72.19 ? C8A COA 300 A 1 HETATM 10 N N9A COA . . . C 2 -41.38 -97.356 -18.019 1 68.54 ? N9A COA 300 A 1 HETATM 11 C C1B COA . . . C 2 -40.372 -96.564 -17.399 1 64.25 ? C1B COA 300 A 1 HETATM 12 C C2B COA . . . C 2 -40.522 -96.525 -16.096 1 62.81 ? C2B COA 300 A 1 HETATM 13 O O2B COA . . . C 2 -40.027 -95.259 -15.571 1 58.81 ? O2B COA 300 A 1 HETATM 14 C C3B COA . . . C 2 -39.636 -97.748 -15.507 1 63.79 ? C3B COA 300 A 1 HETATM 15 O O3B COA . . . C 2 -39.325 -97.46 -14.15 1 66.53 ? O3B COA 300 A 1 HETATM 16 P P3B COA . . . C 2 -40.133 -98.236 -12.999 1 75.69 ? P3B COA 300 A 1 HETATM 17 O O7A COA . . . C 2 -39.193 -98.505 -11.848 1 74.59 ? O7A COA 300 A 1 HETATM 18 O O8A COA . . . C 2 -40.663 -99.535 -13.581 1 64.18 ? O8A COA 300 A 1 HETATM 19 O O9A COA . . . C 2 -41.273 -97.364 -12.515 1 76.04 ? O9A COA 300 A 1 HETATM 20 C C4B COA . . . C 2 -38.507 -97.778 -16.262 1 61.61 ? C4B COA 300 A 1 HETATM 21 O O4B COA . . . C 2 -38.975 -97.29 -17.622 1 64.24 ? O4B COA 300 A 1 HETATM 22 C C5B COA . . . C 2 -37.908 -99.174 -16.397 1 58.49 ? C5B COA 300 A 1 HETATM 23 O O5B COA . . . C 2 -38.728 -99.973 -17.244 1 59.88 ? O5B COA 300 A 1 HETATM 24 P P1A COA . . . C 2 -38.131 -101.289 -17.937 1 42.05 ? P1A COA 300 A 1 HETATM 25 O O1A COA . . . C 2 -36.658 -101.462 -17.602 1 44.62 ? O1A COA 300 A 1 HETATM 26 O O2A COA . . . C 2 -38.875 -102.52 -17.456 1 45.42 ? O2A COA 300 A 1 HETATM 27 O O3A COA . . . C 2 -38.272 -101.07 -19.497 1 79.69 ? O3A COA 300 A 1 HETATM 28 P P2A COA . . . C 2 -39.245 -101.856 -20.42 1 45.73 ? P2A COA 300 A 1 HETATM 29 O O4A COA . . . C 2 -40.629 -101.849 -19.803 1 56.84 ? O4A COA 300 A 1 HETATM 30 O O5A COA . . . C 2 -38.715 -103.274 -20.554 1 42.61 ? O5A COA 300 A 1 HETATM 31 O O6A COA . . . C 2 -39.333 -101.168 -21.922 1 63.26 ? O6A COA 300 A 1 HETATM 32 C CBP COA . . . C 2 -40.501 -99.374 -23.232 1 79.39 ? CBP COA 300 A 1 HETATM 33 C CCP COA . . . C 2 -39.549 -99.749 -22.057 1 61.67 ? CCP COA 300 A 1 HETATM 34 C CDP COA . . . C 2 -41.863 -100.126 -23.165 1 26.96 ? CDP COA 300 A 1 HETATM 35 C CEP COA . . . C 2 -40.758 -97.846 -23.167 1 62.08 ? CEP COA 300 A 1 HETATM 36 C CAP COA . . . C 2 -39.8 -99.702 -24.612 1 68.97 ? CAP COA 300 A 1 HETATM 37 O OAP COA . . . C 2 -38.448 -99.952 -24.369 1 67.26 ? OAP COA 300 A 1 HETATM 38 C C9P COA . . . C 2 -40.425 -100.872 -25.279 1 64.58 ? C9P COA 300 A 1 HETATM 39 O O9P COA . . . C 2 -40.111 -101.973 -24.978 1 76.35 ? O9P COA 300 A 1 HETATM 40 N N8P COA . . . C 2 -41.424 -100.736 -26.317 1 53.15 ? N8P COA 300 A 1 HETATM 41 C C7P COA . . . C 2 -41.884 -99.44 -26.763 1 43.78 ? C7P COA 300 A 1 HETATM 42 C C6P COA . . . C 2 -41.188 -99.141 -28.132 1 39.69 ? C6P COA 300 A 1 HETATM 43 C C5P COA . . . C 2 -41.148 -97.594 -28.289 1 79.96 ? C5P COA 300 A 1 HETATM 44 O O5P COA . . . C 2 -42.194 -96.962 -28.42 1 82.68 ? O5P COA 300 A 1 HETATM 45 N N4P COA . . . C 2 -39.87 -96.925 -28.267 1 66.19 ? N4P COA 300 A 1 HETATM 46 C C3P COA . . . C 2 -38.687 -97.672 -28.115 1 56.91 ? C3P COA 300 A 1 HETATM 47 C C2P COA . . . C 2 -37.504 -96.851 -28.687 1 56.63 ? C2P COA 300 A 1 HETATM 48 S S1P COA . . . C 2 -37.833 -95.098 -28.546 1 101 ? S1P COA 300 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #