data_5C88
#
_model_server_result.job_id            fWWq8sVcl6jx-DROXAdQYg 
_model_server_result.datetime_utc      '2024-11-27 06:29:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    5C88 
#
_exptl.entry_id    5C88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.88 
_cell.angle_gamma         90 
_cell.entry_id            5C88 
_cell.length_a            34.154 
_cell.length_b            84.246 
_cell.length_c            49.165 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     5C88 
_atom_sites.fract_transf_matrix[1][1]    0.029279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000061 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01187 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 COA A 1 300 300 COA COA . 
D 2 COA B 1 300 300 COA COA . 
E 3 HOH A 1 401 22 HOH HOH . 
E 3 HOH A 2 402 28 HOH HOH . 
E 3 HOH A 3 403 9 HOH HOH . 
E 3 HOH A 4 404 4 HOH HOH . 
E 3 HOH A 5 405 25 HOH HOH . 
E 3 HOH A 6 406 23 HOH HOH . 
E 3 HOH A 7 407 1 HOH HOH . 
E 3 HOH A 8 408 24 HOH HOH . 
E 3 HOH A 9 409 21 HOH HOH . 
E 3 HOH A 10 410 19 HOH HOH . 
E 3 HOH A 11 411 13 HOH HOH . 
E 3 HOH A 12 412 12 HOH HOH . 
F 3 HOH B 1 401 5 HOH HOH . 
F 3 HOH B 2 402 3 HOH HOH . 
F 3 HOH B 3 403 6 HOH HOH . 
F 3 HOH B 4 404 11 HOH HOH . 
F 3 HOH B 5 405 10 HOH HOH . 
F 3 HOH B 6 406 15 HOH HOH . 
F 3 HOH B 7 407 20 HOH HOH . 
F 3 HOH B 8 408 7 HOH HOH . 
F 3 HOH B 9 409 29 HOH HOH . 
F 3 HOH B 10 410 2 HOH HOH . 
F 3 HOH B 11 411 14 HOH HOH . 
F 3 HOH B 12 412 8 HOH HOH . 
F 3 HOH B 13 413 16 HOH HOH . 
F 3 HOH B 14 414 26 HOH HOH . 
F 3 HOH B 15 415 27 HOH HOH . 
F 3 HOH B 16 416 30 HOH HOH . 
F 3 HOH B 17 417 17 HOH HOH . 
F 3 HOH B 18 418 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . D 2 -5.952 -115.791 -42.936 1 56.51 ? N1A COA 300 B 1 
HETATM 2 C C2A COA . . . D 2 -6.561 -116.811 -42.256 1 57.2 ? C2A COA 300 B 1 
HETATM 3 N N3A COA . . . D 2 -7.919 -116.819 -42.1 1 62.22 ? N3A COA 300 B 1 
HETATM 4 C C4A COA . . . D 2 -8.683 -115.807 -42.62 1 64.8 ? C4A COA 300 B 1 
HETATM 5 C C5A COA . . . D 2 -8.079 -114.796 -43.295 1 59.25 ? C5A COA 300 B 1 
HETATM 6 C C6A COA . . . D 2 -6.699 -114.795 -43.451 1 55.71 ? C6A COA 300 B 1 
HETATM 7 N N6A COA . . . D 2 -5.576 -114.093 -44.002 1 48.05 ? N6A COA 300 B 1 
HETATM 8 N N7A COA . . . D 2 -9.031 -113.921 -43.716 1 58.15 ? N7A COA 300 B 1 
HETATM 9 C C8A COA . . . D 2 -10.23 -114.395 -43.296 1 66.06 ? C8A COA 300 B 1 
HETATM 10 N N9A COA . . . D 2 -10.036 -115.555 -42.616 1 64.1 ? N9A COA 300 B 1 
HETATM 11 C C1B COA . . . D 2 -11.027 -116.373 -41.997 1 58.4 ? C1B COA 300 B 1 
HETATM 12 C C2B COA . . . D 2 -10.746 -116.552 -40.728 1 60.06 ? C2B COA 300 B 1 
HETATM 13 O O2B COA . . . D 2 -11.444 -117.691 -40.145 1 60.37 ? O2B COA 300 B 1 
HETATM 14 C C3B COA . . . D 2 -11.262 -115.201 -40.008 1 70.14 ? C3B COA 300 B 1 
HETATM 15 O O3B COA . . . D 2 -11.528 -115.5 -38.646 1 69.22 ? O3B COA 300 B 1 
HETATM 16 P P3B COA . . . D 2 -11.337 -114.282 -37.622 1 84.96 ? P3B COA 300 B 1 
HETATM 17 O O7A COA . . . D 2 -12.702 -113.701 -37.35 1 91.77 ? O7A COA 300 B 1 
HETATM 18 O O8A COA . . . D 2 -10.429 -113.255 -38.267 1 81.54 ? O8A COA 300 B 1 
HETATM 19 O O9A COA . . . D 2 -10.735 -114.758 -36.321 1 85.61 ? O9A COA 300 B 1 
HETATM 20 C C4B COA . . . D 2 -12.375 -114.76 -40.66 1 66.14 ? C4B COA 300 B 1 
HETATM 21 O O4B COA . . . D 2 -12.397 -115.562 -41.955 1 61.94 ? O4B COA 300 B 1 
HETATM 22 C C5B COA . . . D 2 -12.267 -113.255 -40.941 1 62.73 ? C5B COA 300 B 1 
HETATM 23 O O5B COA . . . D 2 -13.364 -112.763 -41.708 1 54.51 ? O5B COA 300 B 1 
HETATM 24 P P1A COA . . . D 2 -13.231 -111.42 -42.594 1 45.75 ? P1A COA 300 B 1 
HETATM 25 O O1A COA . . . D 2 -12.472 -110.286 -41.929 1 34.11 ? O1A COA 300 B 1 
HETATM 26 O O2A COA . . . D 2 -14.644 -110.945 -42.864 1 44.6 ? O2A COA 300 B 1 
HETATM 27 O O3A COA . . . D 2 -12.536 -111.852 -43.95 1 51.25 ? O3A COA 300 B 1 
HETATM 28 P P2A COA . . . D 2 -12.087 -110.867 -45.068 1 39.28 ? P2A COA 300 B 1 
HETATM 29 O O4A COA . . . D 2 -12.907 -109.608 -44.964 1 43.73 ? O4A COA 300 B 1 
HETATM 30 O O5A COA . . . D 2 -10.596 -110.626 -44.828 1 53.88 ? O5A COA 300 B 1 
HETATM 31 O O6A COA . . . D 2 -12.236 -111.486 -46.588 1 51.83 ? O6A COA 300 B 1 
HETATM 32 C CBP COA . . . D 2 -11.128 -113.287 -47.917 1 63.26 ? CBP COA 300 B 1 
HETATM 33 C CCP COA . . . D 2 -12.085 -112.902 -46.764 1 55.87 ? CCP COA 300 B 1 
HETATM 34 C CDP COA . . . D 2 -9.758 -112.569 -47.808 1 30.21 ? CDP COA 300 B 1 
HETATM 35 C CEP COA . . . D 2 -10.923 -114.817 -47.801 1 65.11 ? CEP COA 300 B 1 
HETATM 36 C CAP COA . . . D 2 -11.789 -112.938 -49.314 1 69.98 ? CAP COA 300 B 1 
HETATM 37 O OAP COA . . . D 2 -12.876 -112.082 -49.094 1 67.72 ? OAP COA 300 B 1 
HETATM 38 C C9P COA . . . D 2 -10.834 -112.319 -50.282 1 62.7 ? C9P COA 300 B 1 
HETATM 39 O O9P COA . . . D 2 -10.917 -111.162 -50.49 1 60.54 ? O9P COA 300 B 1 
HETATM 40 N N8P COA . . . D 2 -9.82 -113.047 -51.045 1 65.12 ? N8P COA 300 B 1 
HETATM 41 C C7P COA . . . D 2 -9.566 -114.494 -50.937 1 73.5 ? C7P COA 300 B 1 
HETATM 42 C C6P COA . . . D 2 -10.716 -115.379 -51.553 1 70.63 ? C6P COA 300 B 1 
HETATM 43 C C5P COA . . . D 2 -11.52 -114.61 -52.642 1 68.71 ? C5P COA 300 B 1 
HETATM 44 O O5P COA . . . D 2 -11.17 -113.49 -52.986 1 68.98 ? O5P COA 300 B 1 
HETATM 45 N N4P COA . . . D 2 -12.678 -115.23 -53.242 1 66.3 ? N4P COA 300 B 1 
HETATM 46 C C3P COA . . . D 2 -13.09 -116.522 -52.852 1 67.45 ? C3P COA 300 B 1 
HETATM 47 C C2P COA . . . D 2 -13.828 -117.217 -54.023 1 72.56 ? C2P COA 300 B 1 
HETATM 48 S S1P COA . . . D 2 -14.996 -118.406 -53.371 1 75.32 ? S1P COA 300 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           52 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           997 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           48 
#