data_5C8B # _model_server_result.job_id JiyJcfLsgt3VX73gOQAeXQ _model_server_result.datetime_utc '2025-04-12 14:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5C8B # _exptl.entry_id 5C8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8B _cell.length_a 82.5 _cell.length_b 82.5 _cell.length_c 156.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5C8B _atom_sites.fract_transf_matrix[1][1] 0.012121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC B 1 601 1 BGC PDB . C 3 HOH B 1 701 71 HOH HOH . C 3 HOH B 2 702 48 HOH HOH . C 3 HOH B 3 703 40 HOH HOH . C 3 HOH B 4 704 13 HOH HOH . C 3 HOH B 5 705 16 HOH HOH . C 3 HOH B 6 706 123 HOH HOH . C 3 HOH B 7 707 14 HOH HOH . C 3 HOH B 8 708 109 HOH HOH . C 3 HOH B 9 709 107 HOH HOH . C 3 HOH B 10 710 73 HOH HOH . C 3 HOH B 11 711 11 HOH HOH . C 3 HOH B 12 712 64 HOH HOH . C 3 HOH B 13 713 127 HOH HOH . C 3 HOH B 14 714 92 HOH HOH . C 3 HOH B 15 715 120 HOH HOH . C 3 HOH B 16 716 3 HOH HOH . C 3 HOH B 17 717 80 HOH HOH . C 3 HOH B 18 718 69 HOH HOH . C 3 HOH B 19 719 35 HOH HOH . C 3 HOH B 20 720 111 HOH HOH . C 3 HOH B 21 721 60 HOH HOH . C 3 HOH B 22 722 12 HOH HOH . C 3 HOH B 23 723 134 HOH HOH . C 3 HOH B 24 724 106 HOH HOH . C 3 HOH B 25 725 29 HOH HOH . C 3 HOH B 26 726 124 HOH HOH . C 3 HOH B 27 727 122 HOH HOH . C 3 HOH B 28 728 75 HOH HOH . C 3 HOH B 29 729 132 HOH HOH . C 3 HOH B 30 730 87 HOH HOH . C 3 HOH B 31 731 101 HOH HOH . C 3 HOH B 32 732 10 HOH HOH . C 3 HOH B 33 733 1 HOH HOH . C 3 HOH B 34 734 31 HOH HOH . C 3 HOH B 35 735 55 HOH HOH . C 3 HOH B 36 736 45 HOH HOH . C 3 HOH B 37 737 135 HOH HOH . C 3 HOH B 38 738 108 HOH HOH . C 3 HOH B 39 739 50 HOH HOH . C 3 HOH B 40 740 8 HOH HOH . C 3 HOH B 41 741 5 HOH HOH . C 3 HOH B 42 742 26 HOH HOH . C 3 HOH B 43 743 20 HOH HOH . C 3 HOH B 44 744 125 HOH HOH . C 3 HOH B 45 745 97 HOH HOH . C 3 HOH B 46 746 57 HOH HOH . C 3 HOH B 47 747 102 HOH HOH . C 3 HOH B 48 748 51 HOH HOH . C 3 HOH B 49 749 25 HOH HOH . C 3 HOH B 50 750 65 HOH HOH . C 3 HOH B 51 751 74 HOH HOH . C 3 HOH B 52 752 28 HOH HOH . C 3 HOH B 53 753 33 HOH HOH . C 3 HOH B 54 754 4 HOH HOH . C 3 HOH B 55 755 139 HOH HOH . C 3 HOH B 56 756 24 HOH HOH . C 3 HOH B 57 757 6 HOH HOH . C 3 HOH B 58 758 72 HOH HOH . C 3 HOH B 59 759 110 HOH HOH . C 3 HOH B 60 760 54 HOH HOH . C 3 HOH B 61 761 90 HOH HOH . C 3 HOH B 62 762 34 HOH HOH . C 3 HOH B 63 763 68 HOH HOH . C 3 HOH B 64 764 121 HOH HOH . C 3 HOH B 65 765 78 HOH HOH . C 3 HOH B 66 766 82 HOH HOH . C 3 HOH B 67 767 76 HOH HOH . C 3 HOH B 68 768 141 HOH HOH . C 3 HOH B 69 769 7 HOH HOH . C 3 HOH B 70 770 36 HOH HOH . C 3 HOH B 71 771 30 HOH HOH . C 3 HOH B 72 772 140 HOH HOH . C 3 HOH B 73 773 19 HOH HOH . C 3 HOH B 74 774 130 HOH HOH . C 3 HOH B 75 775 15 HOH HOH . C 3 HOH B 76 776 129 HOH HOH . C 3 HOH B 77 777 27 HOH HOH . C 3 HOH B 78 778 86 HOH HOH . C 3 HOH B 79 779 39 HOH HOH . C 3 HOH B 80 780 17 HOH HOH . C 3 HOH B 81 781 104 HOH HOH . C 3 HOH B 82 782 59 HOH HOH . C 3 HOH B 83 783 18 HOH HOH . C 3 HOH B 84 784 49 HOH HOH . C 3 HOH B 85 785 77 HOH HOH . C 3 HOH B 86 786 47 HOH HOH . C 3 HOH B 87 787 136 HOH HOH . C 3 HOH B 88 788 79 HOH HOH . C 3 HOH B 89 789 58 HOH HOH . C 3 HOH B 90 790 131 HOH HOH . C 3 HOH B 91 791 115 HOH HOH . C 3 HOH B 92 792 99 HOH HOH . C 3 HOH B 93 793 89 HOH HOH . C 3 HOH B 94 794 94 HOH HOH . C 3 HOH B 95 795 32 HOH HOH . C 3 HOH B 96 796 53 HOH HOH . C 3 HOH B 97 797 41 HOH HOH . C 3 HOH B 98 798 38 HOH HOH . C 3 HOH B 99 799 9 HOH HOH . C 3 HOH B 100 800 128 HOH HOH . C 3 HOH B 101 801 2 HOH HOH . C 3 HOH B 102 802 93 HOH HOH . C 3 HOH B 103 803 95 HOH HOH . C 3 HOH B 104 804 133 HOH HOH . C 3 HOH B 105 805 23 HOH HOH . C 3 HOH B 106 806 63 HOH HOH . C 3 HOH B 107 807 88 HOH HOH . C 3 HOH B 108 808 137 HOH HOH . C 3 HOH B 109 809 96 HOH HOH . C 3 HOH B 110 810 83 HOH HOH . C 3 HOH B 111 811 91 HOH HOH . C 3 HOH B 112 812 66 HOH HOH . C 3 HOH B 113 813 37 HOH HOH . C 3 HOH B 114 814 21 HOH HOH . C 3 HOH B 115 815 85 HOH HOH . C 3 HOH B 116 816 126 HOH HOH . C 3 HOH B 117 817 52 HOH HOH . C 3 HOH B 118 818 105 HOH HOH . C 3 HOH B 119 819 112 HOH HOH . C 3 HOH B 120 820 142 HOH HOH . C 3 HOH B 121 821 138 HOH HOH . C 3 HOH B 122 822 42 HOH HOH . C 3 HOH B 123 823 44 HOH HOH . C 3 HOH B 124 824 22 HOH HOH . C 3 HOH B 125 825 118 HOH HOH . C 3 HOH B 126 826 119 HOH HOH . C 3 HOH B 127 827 81 HOH HOH . C 3 HOH B 128 828 114 HOH HOH . C 3 HOH B 129 829 67 HOH HOH . C 3 HOH B 130 830 84 HOH HOH . C 3 HOH B 131 831 61 HOH HOH . C 3 HOH B 132 832 116 HOH HOH . C 3 HOH B 133 833 117 HOH HOH . C 3 HOH B 134 834 43 HOH HOH . C 3 HOH B 135 835 46 HOH HOH . C 3 HOH B 136 836 100 HOH HOH . C 3 HOH B 137 837 70 HOH HOH . C 3 HOH B 138 838 56 HOH HOH . C 3 HOH B 139 839 113 HOH HOH . C 3 HOH B 140 840 103 HOH HOH . C 3 HOH B 141 841 98 HOH HOH . C 3 HOH B 142 842 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . B 2 -11.528 -21.427 -17.625 1 76.73 ? C2 BGC 601 B 1 HETATM 2 C C3 BGC . . . B 2 -11.15 -20.671 -16.415 1 72.93 ? C3 BGC 601 B 1 HETATM 3 C C4 BGC . . . B 2 -12.413 -19.99 -15.877 1 74.06 ? C4 BGC 601 B 1 HETATM 4 C C5 BGC . . . B 2 -13.473 -21.09 -15.532 1 85.12 ? C5 BGC 601 B 1 HETATM 5 C C6 BGC . . . B 2 -14.848 -20.531 -15.091 1 87.97 ? C6 BGC 601 B 1 HETATM 6 C C1 BGC . . . B 2 -12.552 -22.482 -17.249 1 78.12 ? C1 BGC 601 B 1 HETATM 7 O O1 BGC . . . B 2 -13.007 -23.105 -18.433 1 83.21 ? O1 BGC 601 B 1 HETATM 8 O O2 BGC . . . B 2 -10.314 -22.007 -18.195 1 76.26 ? O2 BGC 601 B 1 HETATM 9 O O3 BGC . . . B 2 -10.039 -19.769 -16.807 1 62.64 ? O3 BGC 601 B 1 HETATM 10 O O4 BGC . . . B 2 -12.106 -19.249 -14.685 1 86.46 ? O4 BGC 601 B 1 HETATM 11 O O5 BGC . . . B 2 -13.734 -21.927 -16.674 1 80.64 ? O5 BGC 601 B 1 HETATM 12 O O6 BGC . . . B 2 -15.61 -20.235 -16.337 1 88.91 ? O6 BGC 601 B 1 HETATM 13 H H2 BGC . . . B 2 -11.957 -20.736 -18.351 1 92.07 ? H2 BGC 601 B 1 HETATM 14 H H3 BGC . . . B 2 -10.759 -21.359 -15.666 1 87.51 ? H3 BGC 601 B 1 HETATM 15 H H4 BGC . . . B 2 -12.81 -19.326 -16.645 1 88.87 ? H4 BGC 601 B 1 HETATM 16 H H5 BGC . . . B 2 -13.061 -21.714 -14.738 1 102.15 ? H5 BGC 601 B 1 HETATM 17 H H61 BGC . . . B 2 -15.497 -21.234 -14.662 1 105.57 ? H61 BGC 601 B 1 HETATM 18 H H62 BGC . . . B 2 -14.831 -19.585 -14.638 1 105.57 ? H62 BGC 601 B 1 HETATM 19 H H1 BGC . . . B 2 -12.107 -23.192 -16.551 1 93.75 ? H1 BGC 601 B 1 HETATM 20 H HO1 BGC . . . B 2 -13.688 -23.8 -18.203 1 99.85 ? HO1 BGC 601 B 1 HETATM 21 H HO2 BGC . . . B 2 -10.545 -22.514 -19.026 1 91.51 ? HO2 BGC 601 B 1 HETATM 22 H HO3 BGC . . . B 2 -9.275 -20.313 -17.156 1 75.17 ? HO3 BGC 601 B 1 HETATM 23 H HO4 BGC . . . B 2 -11.425 -18.547 -14.894 1 103.75 ? HO4 BGC 601 B 1 HETATM 24 H HO6 BGC . . . B 2 -16.513 -19.877 -16.099 1 106.69 ? HO6 BGC 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #