data_5C8G # _model_server_result.job_id YwMSL0SYKNoDfg8dDb2Yyg _model_server_result.datetime_utc '2024-11-24 13:47:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":201}' # _entry.id 5C8G # _exptl.entry_id 5C8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8G _cell.length_a 53.092 _cell.length_b 53.092 _cell.length_c 103.424 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,R 1 1 B,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 O N N # _chem_comp.formula 'C28 H39 N7 O3' _chem_comp.formula_weight 521.654 _chem_comp.id R78 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 R78 doub 277 n y N1 C1 R78 sing 278 n y N3 C5 R78 sing 279 n n N3 C8 R78 sing 280 n n N3 C2 R78 sing 281 n n C4 C3 R78 sing 282 n y C5 C6 R78 sing 283 n n C5 C9 R78 sing 284 n n C6 O1 R78 doub 285 n n C6 N4 R78 sing 286 n n C7 C20 R78 doub 287 n y C7 C16 R78 sing 288 n y C7 N5 R78 sing 289 n n C8 C15 R78 sing 290 n n C8 C12 R78 sing 291 n n C10 C9 R78 sing 292 n n C13 C14 R78 sing 293 n n C13 C12 R78 sing 294 n n C15 C14 R78 sing 295 n n C17 C18 R78 sing 296 n y C17 C16 R78 doub 297 n y C20 C19 R78 sing 298 n y C21 O2 R78 doub 299 n n C21 N6 R78 sing 300 n n C21 C18 R78 sing 301 n n C22 N6 R78 sing 302 n n C22 C29 R78 sing 303 n n C22 C23 R78 sing 304 n n C24 N7 R78 sing 305 n n C24 C23 R78 sing 306 n n C28 C29 R78 sing 307 n n C28 N7 R78 sing 308 n n N7 C30 R78 sing 309 n n C18 C19 R78 doub 310 n y C16 O3 R78 sing 311 n n O3 C31 R78 sing 312 n n N5 C1 R78 sing 313 n n C1 N2 R78 doub 314 n y N2 C2 R78 sing 315 n y C2 C3 R78 doub 316 n y N4 C11 R78 sing 317 n n N4 C3 R78 sing 318 n n C4 H4 R78 sing 319 n n C5 H5 R78 sing 320 n n C8 H8 R78 sing 321 n n C10 H10 R78 sing 322 n n C10 H10A R78 sing 323 n n C10 H10B R78 sing 324 n n C13 H13 R78 sing 325 n n C13 H13A R78 sing 326 n n C15 H15 R78 sing 327 n n C15 H15A R78 sing 328 n n C17 H17 R78 sing 329 n n C20 H20 R78 sing 330 n n C22 H22 R78 sing 331 n n C24 H24 R78 sing 332 n n C24 H24A R78 sing 333 n n C28 H28 R78 sing 334 n n C28 H28A R78 sing 335 n n N6 HN6 R78 sing 336 n n C29 H29 R78 sing 337 n n C29 H29A R78 sing 338 n n C30 H30 R78 sing 339 n n C30 H30A R78 sing 340 n n C30 H30B R78 sing 341 n n C23 H23 R78 sing 342 n n C23 H23A R78 sing 343 n n C31 H31 R78 sing 344 n n C31 H31A R78 sing 345 n n C31 H31B R78 sing 346 n n C19 H19 R78 sing 347 n n N5 HN5 R78 sing 348 n n C14 H14 R78 sing 349 n n C14 H14A R78 sing 350 n n C12 H12 R78 sing 351 n n C12 H12A R78 sing 352 n n C9 H9 R78 sing 353 n n C9 H9A R78 sing 354 n n C11 H11 R78 sing 355 n n C11 H11A R78 sing 356 n n C11 H11B R78 sing 357 n n # _atom_sites.entry_id 5C8G _atom_sites.fract_transf_matrix[1][1] 0.018835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R78 A 1 201 1000 R78 R78 . D 3 UNX A 1 202 1 UNX UNX . E 3 UNX A 1 203 2 UNX UNX . F 3 UNX A 1 204 3 UNX UNX . G 3 UNX A 1 205 4 UNX UNX . H 3 UNX A 1 206 6 UNX UNX . I 3 UNX A 1 207 7 UNX UNX . J 3 UNX A 1 208 8 UNX UNX . K 3 UNX A 1 209 9 UNX UNX . L 3 UNX A 1 210 10 UNX UNX . M 3 UNX A 1 211 12 UNX UNX . N 3 UNX A 1 212 13 UNX UNX . O 2 R78 B 1 201 1000 R78 R78 . P 3 UNX B 1 202 5 UNX UNX . Q 3 UNX B 1 203 11 UNX UNX . R 4 HOH A 1 301 15 HOH HOH . R 4 HOH A 2 302 42 HOH HOH . R 4 HOH A 3 303 64 HOH HOH . R 4 HOH A 4 304 75 HOH HOH . R 4 HOH A 5 305 39 HOH HOH . R 4 HOH A 6 306 3 HOH HOH . R 4 HOH A 7 307 58 HOH HOH . R 4 HOH A 8 308 88 HOH HOH . R 4 HOH A 9 309 46 HOH HOH . R 4 HOH A 10 310 6 HOH HOH . R 4 HOH A 11 311 10 HOH HOH . R 4 HOH A 12 312 106 HOH HOH . R 4 HOH A 13 313 83 HOH HOH . R 4 HOH A 14 314 16 HOH HOH . R 4 HOH A 15 315 32 HOH HOH . R 4 HOH A 16 316 111 HOH HOH . R 4 HOH A 17 317 43 HOH HOH . R 4 HOH A 18 318 79 HOH HOH . R 4 HOH A 19 319 4 HOH HOH . R 4 HOH A 20 320 86 HOH HOH . R 4 HOH A 21 321 23 HOH HOH . R 4 HOH A 22 322 24 HOH HOH . R 4 HOH A 23 323 33 HOH HOH . R 4 HOH A 24 324 53 HOH HOH . R 4 HOH A 25 325 123 HOH HOH . R 4 HOH A 26 326 27 HOH HOH . R 4 HOH A 27 327 30 HOH HOH . R 4 HOH A 28 328 9 HOH HOH . R 4 HOH A 29 329 78 HOH HOH . R 4 HOH A 30 330 35 HOH HOH . R 4 HOH A 31 331 8 HOH HOH . R 4 HOH A 32 332 54 HOH HOH . R 4 HOH A 33 333 76 HOH HOH . R 4 HOH A 34 334 51 HOH HOH . R 4 HOH A 35 335 40 HOH HOH . R 4 HOH A 36 336 29 HOH HOH . R 4 HOH A 37 337 102 HOH HOH . R 4 HOH A 38 338 21 HOH HOH . R 4 HOH A 39 339 67 HOH HOH . R 4 HOH A 40 340 26 HOH HOH . R 4 HOH A 41 341 103 HOH HOH . R 4 HOH A 42 342 13 HOH HOH . R 4 HOH A 43 343 50 HOH HOH . R 4 HOH A 44 344 70 HOH HOH . R 4 HOH A 45 345 108 HOH HOH . R 4 HOH A 46 346 45 HOH HOH . R 4 HOH A 47 347 82 HOH HOH . R 4 HOH A 48 348 116 HOH HOH . R 4 HOH A 49 349 2 HOH HOH . R 4 HOH A 50 350 61 HOH HOH . R 4 HOH A 51 351 117 HOH HOH . R 4 HOH A 52 352 100 HOH HOH . R 4 HOH A 53 353 7 HOH HOH . R 4 HOH A 54 354 90 HOH HOH . R 4 HOH A 55 355 101 HOH HOH . R 4 HOH A 56 356 94 HOH HOH . R 4 HOH A 57 357 69 HOH HOH . R 4 HOH A 58 358 80 HOH HOH . R 4 HOH A 59 359 41 HOH HOH . R 4 HOH A 60 360 89 HOH HOH . R 4 HOH A 61 361 77 HOH HOH . R 4 HOH A 62 362 81 HOH HOH . R 4 HOH A 63 363 118 HOH HOH . R 4 HOH A 64 364 63 HOH HOH . R 4 HOH A 65 365 91 HOH HOH . R 4 HOH A 66 366 104 HOH HOH . R 4 HOH A 67 367 95 HOH HOH . R 4 HOH A 68 368 122 HOH HOH . R 4 HOH A 69 369 124 HOH HOH . R 4 HOH A 70 370 31 HOH HOH . R 4 HOH A 71 371 93 HOH HOH . R 4 HOH A 72 372 105 HOH HOH . S 4 HOH B 1 301 113 HOH HOH . S 4 HOH B 2 302 85 HOH HOH . S 4 HOH B 3 303 18 HOH HOH . S 4 HOH B 4 304 47 HOH HOH . S 4 HOH B 5 305 121 HOH HOH . S 4 HOH B 6 306 55 HOH HOH . S 4 HOH B 7 307 125 HOH HOH . S 4 HOH B 8 308 112 HOH HOH . S 4 HOH B 9 309 17 HOH HOH . S 4 HOH B 10 310 98 HOH HOH . S 4 HOH B 11 311 92 HOH HOH . S 4 HOH B 12 312 1 HOH HOH . S 4 HOH B 13 313 120 HOH HOH . S 4 HOH B 14 314 57 HOH HOH . S 4 HOH B 15 315 65 HOH HOH . S 4 HOH B 16 316 48 HOH HOH . S 4 HOH B 17 317 20 HOH HOH . S 4 HOH B 18 318 109 HOH HOH . S 4 HOH B 19 319 62 HOH HOH . S 4 HOH B 20 320 74 HOH HOH . S 4 HOH B 21 321 96 HOH HOH . S 4 HOH B 22 322 19 HOH HOH . S 4 HOH B 23 323 14 HOH HOH . S 4 HOH B 24 324 115 HOH HOH . S 4 HOH B 25 325 37 HOH HOH . S 4 HOH B 26 326 127 HOH HOH . S 4 HOH B 27 327 44 HOH HOH . S 4 HOH B 28 328 34 HOH HOH . S 4 HOH B 29 329 87 HOH HOH . S 4 HOH B 30 330 59 HOH HOH . S 4 HOH B 31 331 110 HOH HOH . S 4 HOH B 32 332 5 HOH HOH . S 4 HOH B 33 333 11 HOH HOH . S 4 HOH B 34 334 25 HOH HOH . S 4 HOH B 35 335 84 HOH HOH . S 4 HOH B 36 336 71 HOH HOH . S 4 HOH B 37 337 49 HOH HOH . S 4 HOH B 38 338 68 HOH HOH . S 4 HOH B 39 339 52 HOH HOH . S 4 HOH B 40 340 97 HOH HOH . S 4 HOH B 41 341 38 HOH HOH . S 4 HOH B 42 342 73 HOH HOH . S 4 HOH B 43 343 107 HOH HOH . S 4 HOH B 44 344 60 HOH HOH . S 4 HOH B 45 345 22 HOH HOH . S 4 HOH B 46 346 28 HOH HOH . S 4 HOH B 47 347 12 HOH HOH . S 4 HOH B 48 348 126 HOH HOH . S 4 HOH B 49 349 72 HOH HOH . S 4 HOH B 50 350 114 HOH HOH . S 4 HOH B 51 351 36 HOH HOH . S 4 HOH B 52 352 119 HOH HOH . S 4 HOH B 53 353 99 HOH HOH . S 4 HOH B 54 354 66 HOH HOH . S 4 HOH B 55 355 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 R78 . . . O 2 29.213 -10.413 -0.353 1 12.89 ? N1 R78 201 B 1 HETATM 2 N N3 R78 . . . O 2 29.955 -14.497 -0.765 1 14.24 ? N3 R78 201 B 1 HETATM 3 C C4 R78 . . . O 2 28.28 -11.261 -0.766 1 9.15 ? C4 R78 201 B 1 HETATM 4 C C5 R78 . . . O 2 29.003 -15.312 -1.635 1 14.19 ? C5 R78 201 B 1 HETATM 5 C C6 R78 . . . O 2 27.608 -14.803 -1.419 1 11.67 ? C6 R78 201 B 1 HETATM 6 C C7 R78 . . . O 2 32.782 -10.185 0.312 1 12.79 ? C7 R78 201 B 1 HETATM 7 C C8 R78 . . . O 2 31.361 -15.038 -0.624 1 11.89 ? C8 R78 201 B 1 HETATM 8 C C10 R78 . . . O 2 29.38 -13.956 -3.778 1 11.23 ? C10 R78 201 B 1 HETATM 9 C C13 R78 . . . O 2 32.991 -16.791 -0.831 1 21.1 ? C13 R78 201 B 1 HETATM 10 C C15 R78 . . . O 2 32.377 -14.604 -1.745 1 12.92 ? C15 R78 201 B 1 HETATM 11 C C17 R78 . . . O 2 34.961 -9.079 0.237 1 15.65 ? C17 R78 201 B 1 HETATM 12 C C20 R78 . . . O 2 33.504 -11.394 0.318 1 14.24 ? C20 R78 201 B 1 HETATM 13 C C21 R78 . . . O 2 37.141 -10.333 0.171 1 20.47 ? C21 R78 201 B 1 HETATM 14 C C22 R78 . . . O 2 39.326 -11.574 -0.192 1 14.01 ? C22 R78 201 B 1 HETATM 15 C C24 R78 . . . O 2 41.383 -13.078 -0.283 1 17.07 ? C24 R78 201 B 1 HETATM 16 C C28 R78 . . . O 2 41.391 -11.177 -1.8 1 19.73 ? C28 R78 201 B 1 HETATM 17 O O2 R78 . . . O 2 37.769 -9.287 0.369 1 18.06 ? O2 R78 201 B 1 HETATM 18 N N6 R78 . . . O 2 37.862 -11.472 -0.11 1 14.71 ? N6 R78 201 B 1 HETATM 19 C C29 R78 . . . O 2 39.899 -10.907 -1.485 1 19.74 ? C29 R78 201 B 1 HETATM 20 N N7 R78 . . . O 2 41.782 -12.617 -1.617 1 19.8 ? N7 R78 201 B 1 HETATM 21 C C30 R78 . . . O 2 43.291 -12.692 -1.664 1 19.72 ? C30 R78 201 B 1 HETATM 22 C C23 R78 . . . O 2 39.834 -13.025 -0.162 1 13.29 ? C23 R78 201 B 1 HETATM 23 C C18 R78 . . . O 2 35.663 -10.29 0.237 1 15.13 ? C18 R78 201 B 1 HETATM 24 C C16 R78 . . . O 2 33.561 -9.008 0.285 1 15.15 ? C16 R78 201 B 1 HETATM 25 O O3 R78 . . . O 2 32.88 -7.821 0.273 1 16.74 ? O3 R78 201 B 1 HETATM 26 C C31 R78 . . . O 2 33.654 -6.615 0.267 1 19.9 ? C31 R78 201 B 1 HETATM 27 C C19 R78 . . . O 2 34.897 -11.454 0.282 1 11.73 ? C19 R78 201 B 1 HETATM 28 N N5 R78 . . . O 2 31.347 -10.109 0.355 1 12.4 ? N5 R78 201 B 1 HETATM 29 C C1 R78 . . . O 2 30.423 -10.964 -0.162 1 10.68 ? C1 R78 201 B 1 HETATM 30 N N2 R78 . . . O 2 30.743 -12.282 -0.422 1 9.79 ? N2 R78 201 B 1 HETATM 31 C C2 R78 . . . O 2 29.733 -13.139 -0.622 1 9.48 ? C2 R78 201 B 1 HETATM 32 C C14 R78 . . . O 2 33.462 -15.648 -1.739 1 19.51 ? C14 R78 201 B 1 HETATM 33 C C12 R78 . . . O 2 31.512 -16.528 -0.505 1 17.99 ? C12 R78 201 B 1 HETATM 34 C C9 R78 . . . O 2 29.289 -15.373 -3.167 1 11.54 ? C9 R78 201 B 1 HETATM 35 O O1 R78 . . . O 2 26.627 -15.548 -1.653 1 14.71 ? O1 R78 201 B 1 HETATM 36 N N4 R78 . . . O 2 27.354 -13.491 -1.008 1 10.51 ? N4 R78 201 B 1 HETATM 37 C C11 R78 . . . O 2 25.989 -12.98 -0.827 1 15.74 ? C11 R78 201 B 1 HETATM 38 C C3 R78 . . . O 2 28.431 -12.636 -0.783 1 8.71 ? C3 R78 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #