data_5C8K # _model_server_result.job_id D34E5ML2rxf9Y8rXxIDnZQ _model_server_result.datetime_utc '2024-12-27 02:35:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5C8K # _exptl.entry_id 5C8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.485 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopentyl-N-[2-(4-methoxypiperidin-1-yl)pyrimidin-4-yl]-1H-imidazo[4,5-c]pyridin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8K _cell.length_a 146.454 _cell.length_b 146.454 _cell.length_c 146.454 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O' _chem_comp.formula_weight 393.485 _chem_comp.id 4YV _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopentyl-N-[2-(4-methoxypiperidin-1-yl)pyrimidin-4-yl]-1H-imidazo[4,5-c]pyridin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 4YV sing 1 n n C4 C3 4YV sing 2 n n C5 N6 4YV sing 3 n n O2 C1 4YV sing 4 n n O2 C3 4YV sing 5 n n C3 C8 4YV sing 6 n n N10 C11 4YV doub 7 n y N10 C9 4YV sing 8 n y C11 C12 4YV sing 9 n y N6 C9 4YV sing 10 n n N6 C7 4YV sing 11 n n C9 N14 4YV doub 12 n y C8 C7 4YV sing 13 n n C12 C13 4YV doub 14 n y N14 C13 4YV sing 15 n y C13 N15 4YV sing 16 n n N15 C16 4YV sing 17 n n C16 C17 4YV doub 18 n y C16 N21 4YV sing 19 n y C26 C27 4YV sing 20 n n C26 C25 4YV sing 21 n n C17 C18 4YV sing 22 n y C27 C28 4YV sing 23 n n C25 N24 4YV sing 24 n n C25 C29 4YV sing 25 n n N21 C20 4YV doub 26 n y C18 N24 4YV sing 27 n y C18 C19 4YV doub 28 n y C28 C29 4YV sing 29 n n N24 C23 4YV sing 30 n y C20 C19 4YV sing 31 n y C19 N22 4YV sing 32 n y C23 N22 4YV doub 33 n y C4 H1 4YV sing 34 n n C4 H2 4YV sing 35 n n C5 H3 4YV sing 36 n n C5 H4 4YV sing 37 n n C11 H5 4YV sing 38 n n C7 H6 4YV sing 39 n n C7 H7 4YV sing 40 n n C8 H8 4YV sing 41 n n C8 H9 4YV sing 42 n n C12 H10 4YV sing 43 n n C3 H11 4YV sing 44 n n C1 H12 4YV sing 45 n n C1 H13 4YV sing 46 n n C1 H14 4YV sing 47 n n N15 H15 4YV sing 48 n n C17 H16 4YV sing 49 n n C20 H17 4YV sing 50 n n C23 H18 4YV sing 51 n n C25 H19 4YV sing 52 n n C26 H20 4YV sing 53 n n C26 H21 4YV sing 54 n n C27 H22 4YV sing 55 n n C27 H23 4YV sing 56 n n C28 H24 4YV sing 57 n n C28 H25 4YV sing 58 n n C29 H26 4YV sing 59 n n C29 H27 4YV sing 60 n n # _atom_sites.entry_id 5C8K _atom_sites.fract_transf_matrix[1][1] 0.006828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4YV _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 4YV _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4YV . . . B 2 -51.542 -2.357 -28.072 1 38.15 ? C4 4YV 1101 A 1 HETATM 2 C C5 4YV . . . B 2 -52.837 -1.618 -27.715 1 36.3 ? C5 4YV 1101 A 1 HETATM 3 C C11 4YV . . . B 2 -56.155 0.428 -26.529 1 29.98 ? C11 4YV 1101 A 1 HETATM 4 C C7 4YV . . . B 2 -52 -1.311 -25.307 1 38.56 ? C7 4YV 1101 A 1 HETATM 5 C C8 4YV . . . B 2 -50.672 -1.957 -25.708 1 41.65 ? C8 4YV 1101 A 1 HETATM 6 C C9 4YV . . . B 2 -54.13 -0.58 -25.965 1 33.66 ? C9 4YV 1101 A 1 HETATM 7 C C12 4YV . . . B 2 -56.064 1.249 -25.421 1 30.95 ? C12 4YV 1101 A 1 HETATM 8 C C13 4YV . . . B 2 -54.945 1.122 -24.588 1 33.08 ? C13 4YV 1101 A 1 HETATM 9 C C3 4YV . . . B 2 -50.398 -1.774 -27.215 1 42.64 ? C3 4YV 1101 A 1 HETATM 10 C C1 4YV . . . B 2 -48.666 -3.56 -27.35 1 48.27 ? C1 4YV 1101 A 1 HETATM 11 O O2 4YV . . . B 2 -49.071 -2.198 -27.594 1 45.88 ? O2 4YV 1101 A 1 HETATM 12 N N6 4YV . . . B 2 -53.133 -1.519 -26.251 1 36.56 ? N6 4YV 1101 A 1 HETATM 13 N N10 4YV . . . B 2 -55.198 -0.459 -26.763 1 31.36 ? N10 4YV 1101 A 1 HETATM 14 N N14 4YV . . . B 2 -54.011 0.214 -24.893 1 31.9 ? N14 4YV 1101 A 1 HETATM 15 N N15 4YV . . . B 2 -54.868 1.95 -23.471 1 36.66 ? N15 4YV 1101 A 1 HETATM 16 C C16 4YV . . . B 2 -54.205 1.688 -22.269 1 39.72 ? C16 4YV 1101 A 1 HETATM 17 C C17 4YV . . . B 2 -53.206 0.713 -22.166 1 41.02 ? C17 4YV 1101 A 1 HETATM 18 C C18 4YV . . . B 2 -52.573 0.514 -20.941 1 43.78 ? C18 4YV 1101 A 1 HETATM 19 C C19 4YV . . . B 2 -52.944 1.346 -19.853 1 44.76 ? C19 4YV 1101 A 1 HETATM 20 C C20 4YV . . . B 2 -53.941 2.318 -20.045 1 42.71 ? C20 4YV 1101 A 1 HETATM 21 N N21 4YV . . . B 2 -54.533 2.451 -21.222 1 41.27 ? N21 4YV 1101 A 1 HETATM 22 N N22 4YV . . . B 2 -52.179 0.968 -18.794 1 46.99 ? N22 4YV 1101 A 1 HETATM 23 C C23 4YV . . . B 2 -51.39 -0.003 -19.152 1 46.92 ? C23 4YV 1101 A 1 HETATM 24 N N24 4YV . . . B 2 -51.588 -0.331 -20.467 1 45.96 ? N24 4YV 1101 A 1 HETATM 25 C C25 4YV . . . B 2 -50.864 -1.35 -21.253 1 46.32 ? C25 4YV 1101 A 1 HETATM 26 C C26 4YV . . . B 2 -49.855 -0.672 -22.206 1 45.84 ? C26 4YV 1101 A 1 HETATM 27 C C27 4YV . . . B 2 -48.617 -0.441 -21.311 1 45.33 ? C27 4YV 1101 A 1 HETATM 28 C C28 4YV . . . B 2 -48.542 -1.771 -20.515 1 45.85 ? C28 4YV 1101 A 1 HETATM 29 C C29 4YV . . . B 2 -49.998 -2.285 -20.389 1 46.01 ? C29 4YV 1101 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #