data_5C8M # _model_server_result.job_id TO0VJPjIq2zltn5i_QVOUA _model_server_result.datetime_utc '2024-12-27 02:15:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5C8M # _exptl.entry_id 5C8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.539 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-N-{2-[4-(methylsulfonyl)piperidin-1-yl]pyrimidin-4-yl}-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8M _cell.length_a 149.951 _cell.length_b 149.951 _cell.length_c 149.951 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N7 O2 S' _chem_comp.formula_weight 429.539 _chem_comp.id 4YW _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-N-{2-[4-(methylsulfonyl)piperidin-1-yl]pyrimidin-4-yl}-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 S27 4YW doub 1 n n C23 C22 4YW sing 2 n n C23 C24 4YW sing 3 n n C22 N21 4YW sing 4 n n S27 C30 4YW sing 5 n n S27 C24 4YW sing 6 n n S27 O28 4YW doub 7 n n C24 C25 4YW sing 8 n n N18 C17 4YW doub 9 n y N18 C19 4YW sing 10 n y C17 C16 4YW sing 11 n y N21 C19 4YW sing 12 n n N21 C26 4YW sing 13 n n C19 N20 4YW doub 14 n y C16 C15 4YW doub 15 n y C25 C26 4YW sing 16 n n N20 C15 4YW sing 17 n y C15 N14 4YW sing 18 n n N14 C7 4YW sing 19 n n C7 C8 4YW doub 20 n y C7 N6 4YW sing 21 n y C8 C9 4YW sing 22 n y C12 C11 4YW sing 23 n n C11 C13 4YW sing 24 n n C11 N10 4YW sing 25 n n N6 C5 4YW doub 26 n y C9 N10 4YW sing 27 n y C9 C4 4YW doub 28 n y N10 C2 4YW sing 29 n y C5 C4 4YW sing 30 n y C4 N3 4YW sing 31 n y C2 N3 4YW doub 32 n y C2 C1 4YW sing 33 n n C5 H1 4YW sing 34 n n C11 H2 4YW sing 35 n n C8 H3 4YW sing 36 n n C12 H4 4YW sing 37 n n C12 H5 4YW sing 38 n n C12 H6 4YW sing 39 n n C13 H7 4YW sing 40 n n C13 H8 4YW sing 41 n n C13 H9 4YW sing 42 n n C1 H10 4YW sing 43 n n C1 H11 4YW sing 44 n n C1 H12 4YW sing 45 n n N14 H13 4YW sing 46 n n C16 H14 4YW sing 47 n n C17 H15 4YW sing 48 n n C22 H16 4YW sing 49 n n C22 H17 4YW sing 50 n n C23 H18 4YW sing 51 n n C23 H19 4YW sing 52 n n C24 H20 4YW sing 53 n n C25 H21 4YW sing 54 n n C25 H22 4YW sing 55 n n C26 H23 4YW sing 56 n n C26 H24 4YW sing 57 n n C30 H25 4YW sing 58 n n C30 H26 4YW sing 59 n n C30 H27 4YW sing 60 n n # _atom_sites.entry_id 5C8M _atom_sites.fract_transf_matrix[1][1] 0.006669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4YW _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 4YW _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4YW . . . B 2 -54.713 1.501 -21.273 1 89.77 ? C4 4YW 1101 A 1 HETATM 2 C C5 4YW . . . B 2 -55.704 2.467 -21.495 1 89.18 ? C5 4YW 1101 A 1 HETATM 3 C C11 4YW . . . B 2 -52.659 -1.182 -22.695 1 89.26 ? C11 4YW 1101 A 1 HETATM 4 C C7 4YW . . . B 2 -55.948 1.812 -23.727 1 87.17 ? C7 4YW 1101 A 1 HETATM 5 C C8 4YW . . . B 2 -54.947 0.842 -23.588 1 87.62 ? C8 4YW 1101 A 1 HETATM 6 C C9 4YW . . . B 2 -54.318 0.669 -22.348 1 89.1 ? C9 4YW 1101 A 1 HETATM 7 C C12 4YW . . . B 2 -51.162 -0.94 -22.918 1 90.67 ? C12 4YW 1101 A 1 HETATM 8 C C13 4YW . . . B 2 -53.001 -2.625 -22.312 1 88.73 ? C13 4YW 1101 A 1 HETATM 9 N N3 4YW . . . B 2 -53.964 1.139 -20.202 1 91.14 ? N3 4YW 1101 A 1 HETATM 10 C C1 4YW . . . B 2 -52.187 -0.406 -19.512 1 92.55 ? C1 4YW 1101 A 1 HETATM 11 C C2 4YW . . . B 2 -53.151 0.176 -20.524 1 91.18 ? C2 4YW 1101 A 1 HETATM 12 N N6 4YW . . . B 2 -56.271 2.586 -22.687 1 88.28 ? N6 4YW 1101 A 1 HETATM 13 N N10 4YW . . . B 2 -53.33 -0.165 -21.855 1 90.08 ? N10 4YW 1101 A 1 HETATM 14 N N14 4YW . . . B 2 -56.609 2.06 -24.942 1 85.51 ? N14 4YW 1101 A 1 HETATM 15 C C15 4YW . . . B 2 -56.692 1.217 -26.048 1 84.93 ? C15 4YW 1101 A 1 HETATM 16 C C16 4YW . . . B 2 -57.753 1.375 -26.954 1 83.56 ? C16 4YW 1101 A 1 HETATM 17 C C17 4YW . . . B 2 -57.817 0.537 -28.054 1 83.7 ? C17 4YW 1101 A 1 HETATM 18 N N18 4YW . . . B 2 -56.887 -0.403 -28.21 1 84.97 ? N18 4YW 1101 A 1 HETATM 19 C C19 4YW . . . B 2 -55.874 -0.547 -27.348 1 86.57 ? C19 4YW 1101 A 1 HETATM 20 N N20 4YW . . . B 2 -55.784 0.266 -26.291 1 86.32 ? N20 4YW 1101 A 1 HETATM 21 N N21 4YW . . . B 2 -54.939 -1.57 -27.534 1 88.48 ? N21 4YW 1101 A 1 HETATM 22 C C22 4YW . . . B 2 -54.525 -1.673 -28.96 1 91.13 ? C22 4YW 1101 A 1 HETATM 23 C C23 4YW . . . B 2 -53.344 -2.621 -29.2 1 94.13 ? C23 4YW 1101 A 1 HETATM 24 C C24 4YW . . . B 2 -52.243 -2.158 -28.243 1 95.93 ? C24 4YW 1101 A 1 HETATM 25 C C25 4YW . . . B 2 -52.657 -2.456 -26.795 1 93 ? C25 4YW 1101 A 1 HETATM 26 C C26 4YW . . . B 2 -53.886 -1.592 -26.477 1 89.73 ? C26 4YW 1101 A 1 HETATM 27 S S27 4YW . . . B 2 -50.556 -2.608 -28.753 1 101.02 ? S27 4YW 1101 A 1 HETATM 28 O O28 4YW . . . B 2 -50.1 -3.688 -27.947 1 102.5 ? O28 4YW 1101 A 1 HETATM 29 O O29 4YW . . . B 2 -50.6 -2.789 -30.162 1 102.43 ? O29 4YW 1101 A 1 HETATM 30 C C30 4YW . . . B 2 -49.498 -1.177 -28.376 1 102.03 ? C30 4YW 1101 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #