data_5C8N # _model_server_result.job_id bc7E8n6gfDqCIkkrmtyi-Q _model_server_result.datetime_utc '2024-12-27 01:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5C8N # _exptl.entry_id 5C8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.542 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[4-(2-aminoethyl)-4-methoxypiperidin-1-yl]pyrimidin-4-yl}-2-methyl-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8N _cell.length_a 145.932 _cell.length_b 145.932 _cell.length_c 145.932 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H32 N8 O' _chem_comp.formula_weight 424.542 _chem_comp.id 4YX _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[4-(2-aminoethyl)-4-methoxypiperidin-1-yl]pyrimidin-4-yl}-2-methyl-1-(propan-2-yl)-1H-imidazo[4,5-c]pyridin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N29 4YX sing 1 n n C28 C27 4YX sing 2 n n C23 C22 4YX sing 3 n n C23 C24 4YX sing 4 n n C22 N21 4YX sing 5 n n O30 C24 4YX sing 6 n n O30 C31 4YX sing 7 n n C24 C27 4YX sing 8 n n C24 C25 4YX sing 9 n n N18 C17 4YX doub 10 n y N18 C19 4YX sing 11 n y C17 C16 4YX sing 12 n y N21 C19 4YX sing 13 n n N21 C26 4YX sing 14 n n C19 N20 4YX doub 15 n y C26 C25 4YX sing 16 n n C16 C15 4YX doub 17 n y N20 C15 4YX sing 18 n y C15 N14 4YX sing 19 n n N14 C7 4YX sing 20 n n C7 C8 4YX doub 21 n y C7 N6 4YX sing 22 n y C8 C9 4YX sing 23 n y C12 C11 4YX sing 24 n n C11 C13 4YX sing 25 n n C11 N10 4YX sing 26 n n N6 C5 4YX doub 27 n y C9 N10 4YX sing 28 n y C9 C4 4YX doub 29 n y N10 C2 4YX sing 30 n y C5 C4 4YX sing 31 n y C4 N3 4YX sing 32 n y C2 N3 4YX doub 33 n y C2 C1 4YX sing 34 n n C5 H1 4YX sing 35 n n C11 H2 4YX sing 36 n n C8 H3 4YX sing 37 n n C12 H4 4YX sing 38 n n C12 H5 4YX sing 39 n n C12 H6 4YX sing 40 n n C13 H7 4YX sing 41 n n C13 H8 4YX sing 42 n n C13 H9 4YX sing 43 n n C1 H10 4YX sing 44 n n C1 H11 4YX sing 45 n n C1 H12 4YX sing 46 n n N14 H13 4YX sing 47 n n C16 H14 4YX sing 48 n n C17 H15 4YX sing 49 n n C22 H16 4YX sing 50 n n C22 H17 4YX sing 51 n n C23 H18 4YX sing 52 n n C23 H19 4YX sing 53 n n C25 H20 4YX sing 54 n n C25 H21 4YX sing 55 n n C26 H22 4YX sing 56 n n C26 H23 4YX sing 57 n n C27 H24 4YX sing 58 n n C27 H25 4YX sing 59 n n C28 H26 4YX sing 60 n n C28 H27 4YX sing 61 n n N29 H28 4YX sing 62 n n N29 H29 4YX sing 63 n n C31 H31 4YX sing 64 n n C31 H32 4YX sing 65 n n C31 H33 4YX sing 66 n n # _atom_sites.entry_id 5C8N _atom_sites.fract_transf_matrix[1][1] 0.006853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1101 1 SO4 SO4 . C 3 4YX A 1 1102 1 4YX DRG . D 4 HOH A 1 1201 22 HOH HOH . D 4 HOH A 2 1202 58 HOH HOH . D 4 HOH A 3 1203 39 HOH HOH . D 4 HOH A 4 1204 84 HOH HOH . D 4 HOH A 5 1205 3 HOH HOH . D 4 HOH A 6 1206 47 HOH HOH . D 4 HOH A 7 1207 48 HOH HOH . D 4 HOH A 8 1208 16 HOH HOH . D 4 HOH A 9 1209 36 HOH HOH . D 4 HOH A 10 1210 7 HOH HOH . D 4 HOH A 11 1211 13 HOH HOH . D 4 HOH A 12 1212 4 HOH HOH . D 4 HOH A 13 1213 98 HOH HOH . D 4 HOH A 14 1214 25 HOH HOH . D 4 HOH A 15 1215 108 HOH HOH . D 4 HOH A 16 1216 42 HOH HOH . D 4 HOH A 17 1217 11 HOH HOH . D 4 HOH A 18 1218 2 HOH HOH . D 4 HOH A 19 1219 56 HOH HOH . D 4 HOH A 20 1220 19 HOH HOH . D 4 HOH A 21 1221 41 HOH HOH . D 4 HOH A 22 1222 82 HOH HOH . D 4 HOH A 23 1223 76 HOH HOH . D 4 HOH A 24 1224 46 HOH HOH . D 4 HOH A 25 1225 83 HOH HOH . D 4 HOH A 26 1226 38 HOH HOH . D 4 HOH A 27 1227 15 HOH HOH . D 4 HOH A 28 1228 6 HOH HOH . D 4 HOH A 29 1229 18 HOH HOH . D 4 HOH A 30 1230 14 HOH HOH . D 4 HOH A 31 1231 5 HOH HOH . D 4 HOH A 32 1232 12 HOH HOH . D 4 HOH A 33 1233 8 HOH HOH . D 4 HOH A 34 1234 26 HOH HOH . D 4 HOH A 35 1235 31 HOH HOH . D 4 HOH A 36 1236 17 HOH HOH . D 4 HOH A 37 1237 102 HOH HOH . D 4 HOH A 38 1238 44 HOH HOH . D 4 HOH A 39 1239 60 HOH HOH . D 4 HOH A 40 1240 35 HOH HOH . D 4 HOH A 41 1241 1 HOH HOH . D 4 HOH A 42 1242 9 HOH HOH . D 4 HOH A 43 1243 106 HOH HOH . D 4 HOH A 44 1244 59 HOH HOH . D 4 HOH A 45 1245 66 HOH HOH . D 4 HOH A 46 1246 93 HOH HOH . D 4 HOH A 47 1247 28 HOH HOH . D 4 HOH A 48 1248 113 HOH HOH . D 4 HOH A 49 1249 72 HOH HOH . D 4 HOH A 50 1250 97 HOH HOH . D 4 HOH A 51 1251 79 HOH HOH . D 4 HOH A 52 1252 104 HOH HOH . D 4 HOH A 53 1253 45 HOH HOH . D 4 HOH A 54 1254 24 HOH HOH . D 4 HOH A 55 1255 37 HOH HOH . D 4 HOH A 56 1256 57 HOH HOH . D 4 HOH A 57 1257 20 HOH HOH . D 4 HOH A 58 1258 85 HOH HOH . D 4 HOH A 59 1259 21 HOH HOH . D 4 HOH A 60 1260 49 HOH HOH . D 4 HOH A 61 1261 111 HOH HOH . D 4 HOH A 62 1262 99 HOH HOH . D 4 HOH A 63 1263 29 HOH HOH . D 4 HOH A 64 1264 69 HOH HOH . D 4 HOH A 65 1265 55 HOH HOH . D 4 HOH A 66 1266 73 HOH HOH . D 4 HOH A 67 1267 51 HOH HOH . D 4 HOH A 68 1268 34 HOH HOH . D 4 HOH A 69 1269 118 HOH HOH . D 4 HOH A 70 1270 40 HOH HOH . D 4 HOH A 71 1271 101 HOH HOH . D 4 HOH A 72 1272 32 HOH HOH . D 4 HOH A 73 1273 96 HOH HOH . D 4 HOH A 74 1274 30 HOH HOH . D 4 HOH A 75 1275 110 HOH HOH . D 4 HOH A 76 1276 109 HOH HOH . D 4 HOH A 77 1277 88 HOH HOH . D 4 HOH A 78 1278 27 HOH HOH . D 4 HOH A 79 1279 54 HOH HOH . D 4 HOH A 80 1280 61 HOH HOH . D 4 HOH A 81 1281 119 HOH HOH . D 4 HOH A 82 1282 120 HOH HOH . D 4 HOH A 83 1283 53 HOH HOH . D 4 HOH A 84 1284 10 HOH HOH . D 4 HOH A 85 1285 74 HOH HOH . D 4 HOH A 86 1286 86 HOH HOH . D 4 HOH A 87 1287 89 HOH HOH . D 4 HOH A 88 1288 105 HOH HOH . D 4 HOH A 89 1289 77 HOH HOH . D 4 HOH A 90 1290 107 HOH HOH . D 4 HOH A 91 1291 80 HOH HOH . D 4 HOH A 92 1292 90 HOH HOH . D 4 HOH A 93 1293 95 HOH HOH . D 4 HOH A 94 1294 33 HOH HOH . D 4 HOH A 95 1295 63 HOH HOH . D 4 HOH A 96 1296 52 HOH HOH . D 4 HOH A 97 1297 116 HOH HOH . D 4 HOH A 98 1298 103 HOH HOH . D 4 HOH A 99 1299 112 HOH HOH . D 4 HOH A 100 1300 94 HOH HOH . D 4 HOH A 101 1301 71 HOH HOH . D 4 HOH A 102 1302 43 HOH HOH . D 4 HOH A 103 1303 67 HOH HOH . D 4 HOH A 104 1304 23 HOH HOH . D 4 HOH A 105 1305 65 HOH HOH . D 4 HOH A 106 1306 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4YX . . . C 3 -52.73 1.34 -19.787 1 35.44 ? C4 4YX 1102 A 1 HETATM 2 C C5 4YX . . . C 3 -53.719 2.297 -19.976 1 36.77 ? C5 4YX 1102 A 1 HETATM 3 C C11 4YX . . . C 3 -50.784 -1.278 -21.336 1 45.99 ? C11 4YX 1102 A 1 HETATM 4 C C7 4YX . . . C 3 -53.997 1.67 -22.213 1 32.6 ? C7 4YX 1102 A 1 HETATM 5 C C8 4YX . . . C 3 -53.006 0.7 -22.134 1 30.1 ? C8 4YX 1102 A 1 HETATM 6 C C9 4YX . . . C 3 -52.366 0.534 -20.895 1 38.57 ? C9 4YX 1102 A 1 HETATM 7 C C12 4YX . . . C 3 -49.345 -0.935 -21.697 1 53.84 ? C12 4YX 1102 A 1 HETATM 8 C C13 4YX . . . C 3 -51.086 -2.742 -21.057 1 49.36 ? C13 4YX 1102 A 1 HETATM 9 N N3 4YX . . . C 3 -51.962 0.961 -18.729 1 42.14 ? N3 4YX 1102 A 1 HETATM 10 C C1 4YX . . . C 3 -50.214 -0.647 -18.126 1 47.15 ? C1 4YX 1102 A 1 HETATM 11 C C2 4YX . . . C 3 -51.181 -0.015 -19.096 1 47.01 ? C2 4YX 1102 A 1 HETATM 12 N N6 4YX . . . C 3 -54.305 2.429 -21.16 1 35.57 ? N6 4YX 1102 A 1 HETATM 13 N N10 4YX . . . C 3 -51.389 -0.307 -20.431 1 37.21 ? N10 4YX 1102 A 1 HETATM 14 N N14 4YX . . . C 3 -54.696 1.935 -23.378 1 37.67 ? N14 4YX 1102 A 1 HETATM 15 C C15 4YX . . . C 3 -54.786 1.117 -24.482 1 32.76 ? C15 4YX 1102 A 1 HETATM 16 C C16 4YX . . . C 3 -55.927 1.206 -25.285 1 32.21 ? C16 4YX 1102 A 1 HETATM 17 C C17 4YX . . . C 3 -55.987 0.384 -26.402 1 36.3 ? C17 4YX 1102 A 1 HETATM 18 N N18 4YX . . . C 3 -54.971 -0.431 -26.658 1 31.1 ? N18 4YX 1102 A 1 HETATM 19 C C19 4YX . . . C 3 -53.891 -0.473 -25.891 1 27.24 ? C19 4YX 1102 A 1 HETATM 20 N N20 4YX . . . C 3 -53.8 0.286 -24.816 1 32.81 ? N20 4YX 1102 A 1 HETATM 21 N N21 4YX . . . C 3 -52.852 -1.345 -26.179 1 36.68 ? N21 4YX 1102 A 1 HETATM 22 C C22 4YX . . . C 3 -52.566 -1.657 -27.597 1 31.01 ? C22 4YX 1102 A 1 HETATM 23 C C23 4YX . . . C 3 -51.931 -3.049 -27.618 1 39.6 ? C23 4YX 1102 A 1 HETATM 24 C C24 4YX . . . C 3 -50.676 -3.108 -26.717 1 43.7 ? C24 4YX 1102 A 1 HETATM 25 C C25 4YX . . . C 3 -50.932 -2.54 -25.3 1 41.2 ? C25 4YX 1102 A 1 HETATM 26 C C26 4YX . . . C 3 -51.646 -1.169 -25.354 1 32.21 ? C26 4YX 1102 A 1 HETATM 27 C C27 4YX . . . C 3 -50.263 -4.579 -26.557 1 43.96 ? C27 4YX 1102 A 1 HETATM 28 C C28 4YX . . . C 3 -49.713 -5.127 -27.885 1 63.5 ? C28 4YX 1102 A 1 HETATM 29 N N29 4YX . . . C 3 -49.176 -6.481 -27.712 1 71.81 ? N29 4YX 1102 A 1 HETATM 30 O O30 4YX . . . C 3 -49.649 -2.351 -27.394 1 47.97 ? O30 4YX 1102 A 1 HETATM 31 C C31 4YX . . . C 3 -48.432 -2.084 -26.681 1 50.02 ? C31 4YX 1102 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #