data_5C8R
#
_model_server_result.job_id            XosBcHRu1qo_mb2-pT1jCA 
_model_server_result.datetime_utc      '2024-11-13 02:49:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5C8R 
#
_exptl.entry_id    5C8R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C8R 
_cell.length_a            52.54 
_cell.length_b            149.26 
_cell.length_c            79.17 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.585 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 154 A ASP 211 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 A OD1 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc3 A OD2 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc4 B MN MN . A MN 401 1_555 D O1B UPG . A UPG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc5 B MN MN . A MN 401 1_555 D O1A UPG . A UPG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc6 B MN MN . A MN 401 1_555 F O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 305 n n 
C1 C2 PEG sing 306 n n 
C1 H11 PEG sing 307 n n 
C1 H12 PEG sing 308 n n 
O1 HO1 PEG sing 309 n n 
C2 O2 PEG sing 310 n n 
C2 H21 PEG sing 311 n n 
C2 H22 PEG sing 312 n n 
O2 C3 PEG sing 313 n n 
C3 C4 PEG sing 314 n n 
C3 H31 PEG sing 315 n n 
C3 H32 PEG sing 316 n n 
C4 O4 PEG sing 317 n n 
C4 H41 PEG sing 318 n n 
C4 H42 PEG sing 319 n n 
O4 HO4 PEG sing 320 n n 
#
_atom_sites.entry_id                     5C8R 
_atom_sites.fract_transf_matrix[1][1]    0.019033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 401 3 MN MN . 
C 3 DA8 A 1 402 1 DA8 DAA . 
D 4 UPG A 1 403 1 UPG UPG . 
E 5 PEG A 1 404 1 PEG PEG . 
F 6 HOH A 1 501 222 HOH HOH . 
F 6 HOH A 2 502 76 HOH HOH . 
F 6 HOH A 3 503 89 HOH HOH . 
F 6 HOH A 4 504 26 HOH HOH . 
F 6 HOH A 5 505 227 HOH HOH . 
F 6 HOH A 6 506 163 HOH HOH . 
F 6 HOH A 7 507 98 HOH HOH . 
F 6 HOH A 8 508 52 HOH HOH . 
F 6 HOH A 9 509 65 HOH HOH . 
F 6 HOH A 10 510 148 HOH HOH . 
F 6 HOH A 11 511 197 HOH HOH . 
F 6 HOH A 12 512 15 HOH HOH . 
F 6 HOH A 13 513 31 HOH HOH . 
F 6 HOH A 14 514 133 HOH HOH . 
F 6 HOH A 15 515 235 HOH HOH . 
F 6 HOH A 16 516 99 HOH HOH . 
F 6 HOH A 17 517 158 HOH HOH . 
F 6 HOH A 18 518 71 HOH HOH . 
F 6 HOH A 19 519 35 HOH HOH . 
F 6 HOH A 20 520 29 HOH HOH . 
F 6 HOH A 21 521 137 HOH HOH . 
F 6 HOH A 22 522 57 HOH HOH . 
F 6 HOH A 23 523 127 HOH HOH . 
F 6 HOH A 24 524 232 HOH HOH . 
F 6 HOH A 25 525 30 HOH HOH . 
F 6 HOH A 26 526 120 HOH HOH . 
F 6 HOH A 27 527 23 HOH HOH . 
F 6 HOH A 28 528 162 HOH HOH . 
F 6 HOH A 29 529 4 HOH HOH . 
F 6 HOH A 30 530 106 HOH HOH . 
F 6 HOH A 31 531 191 HOH HOH . 
F 6 HOH A 32 532 8 HOH HOH . 
F 6 HOH A 33 533 84 HOH HOH . 
F 6 HOH A 34 534 54 HOH HOH . 
F 6 HOH A 35 535 100 HOH HOH . 
F 6 HOH A 36 536 124 HOH HOH . 
F 6 HOH A 37 537 132 HOH HOH . 
F 6 HOH A 38 538 136 HOH HOH . 
F 6 HOH A 39 539 95 HOH HOH . 
F 6 HOH A 40 540 90 HOH HOH . 
F 6 HOH A 41 541 5 HOH HOH . 
F 6 HOH A 42 542 1 HOH HOH . 
F 6 HOH A 43 543 211 HOH HOH . 
F 6 HOH A 44 544 44 HOH HOH . 
F 6 HOH A 45 545 75 HOH HOH . 
F 6 HOH A 46 546 32 HOH HOH . 
F 6 HOH A 47 547 79 HOH HOH . 
F 6 HOH A 48 548 145 HOH HOH . 
F 6 HOH A 49 549 122 HOH HOH . 
F 6 HOH A 50 550 139 HOH HOH . 
F 6 HOH A 51 551 157 HOH HOH . 
F 6 HOH A 52 552 150 HOH HOH . 
F 6 HOH A 53 553 97 HOH HOH . 
F 6 HOH A 54 554 36 HOH HOH . 
F 6 HOH A 55 555 45 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 33 HOH HOH . 
F 6 HOH A 58 558 68 HOH HOH . 
F 6 HOH A 59 559 18 HOH HOH . 
F 6 HOH A 60 560 61 HOH HOH . 
F 6 HOH A 61 561 224 HOH HOH . 
F 6 HOH A 62 562 24 HOH HOH . 
F 6 HOH A 63 563 38 HOH HOH . 
F 6 HOH A 64 564 14 HOH HOH . 
F 6 HOH A 65 565 19 HOH HOH . 
F 6 HOH A 66 566 103 HOH HOH . 
F 6 HOH A 67 567 151 HOH HOH . 
F 6 HOH A 68 568 21 HOH HOH . 
F 6 HOH A 69 569 13 HOH HOH . 
F 6 HOH A 70 570 153 HOH HOH . 
F 6 HOH A 71 571 96 HOH HOH . 
F 6 HOH A 72 572 69 HOH HOH . 
F 6 HOH A 73 573 125 HOH HOH . 
F 6 HOH A 74 574 101 HOH HOH . 
F 6 HOH A 75 575 34 HOH HOH . 
F 6 HOH A 76 576 50 HOH HOH . 
F 6 HOH A 77 577 2 HOH HOH . 
F 6 HOH A 78 578 134 HOH HOH . 
F 6 HOH A 79 579 77 HOH HOH . 
F 6 HOH A 80 580 123 HOH HOH . 
F 6 HOH A 81 581 9 HOH HOH . 
F 6 HOH A 82 582 42 HOH HOH . 
F 6 HOH A 83 583 3 HOH HOH . 
F 6 HOH A 84 584 86 HOH HOH . 
F 6 HOH A 85 585 234 HOH HOH . 
F 6 HOH A 86 586 207 HOH HOH . 
F 6 HOH A 87 587 155 HOH HOH . 
F 6 HOH A 88 588 46 HOH HOH . 
F 6 HOH A 89 589 49 HOH HOH . 
F 6 HOH A 90 590 7 HOH HOH . 
F 6 HOH A 91 591 11 HOH HOH . 
F 6 HOH A 92 592 149 HOH HOH . 
F 6 HOH A 93 593 112 HOH HOH . 
F 6 HOH A 94 594 130 HOH HOH . 
F 6 HOH A 95 595 116 HOH HOH . 
F 6 HOH A 96 596 53 HOH HOH . 
F 6 HOH A 97 597 80 HOH HOH . 
F 6 HOH A 98 598 66 HOH HOH . 
F 6 HOH A 99 599 64 HOH HOH . 
F 6 HOH A 100 600 17 HOH HOH . 
F 6 HOH A 101 601 236 HOH HOH . 
F 6 HOH A 102 602 159 HOH HOH . 
F 6 HOH A 103 603 41 HOH HOH . 
F 6 HOH A 104 604 59 HOH HOH . 
F 6 HOH A 105 605 83 HOH HOH . 
F 6 HOH A 106 606 37 HOH HOH . 
F 6 HOH A 107 607 10 HOH HOH . 
F 6 HOH A 108 608 119 HOH HOH . 
F 6 HOH A 109 609 140 HOH HOH . 
F 6 HOH A 110 610 20 HOH HOH . 
F 6 HOH A 111 611 39 HOH HOH . 
F 6 HOH A 112 612 102 HOH HOH . 
F 6 HOH A 113 613 111 HOH HOH . 
F 6 HOH A 114 614 104 HOH HOH . 
F 6 HOH A 115 615 74 HOH HOH . 
F 6 HOH A 116 616 70 HOH HOH . 
F 6 HOH A 117 617 143 HOH HOH . 
F 6 HOH A 118 618 28 HOH HOH . 
F 6 HOH A 119 619 78 HOH HOH . 
F 6 HOH A 120 620 160 HOH HOH . 
F 6 HOH A 121 621 195 HOH HOH . 
F 6 HOH A 122 622 6 HOH HOH . 
F 6 HOH A 123 623 22 HOH HOH . 
F 6 HOH A 124 624 58 HOH HOH . 
F 6 HOH A 125 625 154 HOH HOH . 
F 6 HOH A 126 626 184 HOH HOH . 
F 6 HOH A 127 627 87 HOH HOH . 
F 6 HOH A 128 628 146 HOH HOH . 
F 6 HOH A 129 629 230 HOH HOH . 
F 6 HOH A 130 630 200 HOH HOH . 
F 6 HOH A 131 631 164 HOH HOH . 
F 6 HOH A 132 632 204 HOH HOH . 
F 6 HOH A 133 633 109 HOH HOH . 
F 6 HOH A 134 634 117 HOH HOH . 
F 6 HOH A 135 635 60 HOH HOH . 
F 6 HOH A 136 636 121 HOH HOH . 
F 6 HOH A 137 637 218 HOH HOH . 
F 6 HOH A 138 638 62 HOH HOH . 
F 6 HOH A 139 639 47 HOH HOH . 
F 6 HOH A 140 640 73 HOH HOH . 
F 6 HOH A 141 641 202 HOH HOH . 
F 6 HOH A 142 642 55 HOH HOH . 
F 6 HOH A 143 643 118 HOH HOH . 
F 6 HOH A 144 644 93 HOH HOH . 
F 6 HOH A 145 645 114 HOH HOH . 
F 6 HOH A 146 646 27 HOH HOH . 
F 6 HOH A 147 647 138 HOH HOH . 
F 6 HOH A 148 648 25 HOH HOH . 
F 6 HOH A 149 649 81 HOH HOH . 
F 6 HOH A 150 650 82 HOH HOH . 
F 6 HOH A 151 651 43 HOH HOH . 
F 6 HOH A 152 652 110 HOH HOH . 
F 6 HOH A 153 653 135 HOH HOH . 
F 6 HOH A 154 654 12 HOH HOH . 
F 6 HOH A 155 655 105 HOH HOH . 
F 6 HOH A 156 656 174 HOH HOH . 
F 6 HOH A 157 657 16 HOH HOH . 
F 6 HOH A 158 658 156 HOH HOH . 
F 6 HOH A 159 659 217 HOH HOH . 
F 6 HOH A 160 660 115 HOH HOH . 
F 6 HOH A 161 661 231 HOH HOH . 
F 6 HOH A 162 662 214 HOH HOH . 
F 6 HOH A 163 663 144 HOH HOH . 
F 6 HOH A 164 664 63 HOH HOH . 
F 6 HOH A 165 665 141 HOH HOH . 
F 6 HOH A 166 666 203 HOH HOH . 
F 6 HOH A 167 667 128 HOH HOH . 
F 6 HOH A 168 668 72 HOH HOH . 
F 6 HOH A 169 669 219 HOH HOH . 
F 6 HOH A 170 670 51 HOH HOH . 
F 6 HOH A 171 671 91 HOH HOH . 
F 6 HOH A 172 672 201 HOH HOH . 
F 6 HOH A 173 673 142 HOH HOH . 
F 6 HOH A 174 674 131 HOH HOH . 
F 6 HOH A 175 675 188 HOH HOH . 
F 6 HOH A 176 676 113 HOH HOH . 
F 6 HOH A 177 677 182 HOH HOH . 
F 6 HOH A 178 678 108 HOH HOH . 
F 6 HOH A 179 679 40 HOH HOH . 
F 6 HOH A 180 680 48 HOH HOH . 
F 6 HOH A 181 681 186 HOH HOH . 
F 6 HOH A 182 682 107 HOH HOH . 
F 6 HOH A 183 683 183 HOH HOH . 
F 6 HOH A 184 684 180 HOH HOH . 
F 6 HOH A 185 685 233 HOH HOH . 
F 6 HOH A 186 686 167 HOH HOH . 
F 6 HOH A 187 687 147 HOH HOH . 
F 6 HOH A 188 688 215 HOH HOH . 
F 6 HOH A 189 689 226 HOH HOH . 
F 6 HOH A 190 690 187 HOH HOH . 
F 6 HOH A 191 691 213 HOH HOH . 
F 6 HOH A 192 692 85 HOH HOH . 
F 6 HOH A 193 693 198 HOH HOH . 
F 6 HOH A 194 694 88 HOH HOH . 
F 6 HOH A 195 695 199 HOH HOH . 
F 6 HOH A 196 696 126 HOH HOH . 
F 6 HOH A 197 697 205 HOH HOH . 
F 6 HOH A 198 698 193 HOH HOH . 
F 6 HOH A 199 699 166 HOH HOH . 
F 6 HOH A 200 700 179 HOH HOH . 
F 6 HOH A 201 701 181 HOH HOH . 
F 6 HOH A 202 702 212 HOH HOH . 
F 6 HOH A 203 703 221 HOH HOH . 
F 6 HOH A 204 704 177 HOH HOH . 
F 6 HOH A 205 705 168 HOH HOH . 
F 6 HOH A 206 706 225 HOH HOH . 
F 6 HOH A 207 707 161 HOH HOH . 
F 6 HOH A 208 708 173 HOH HOH . 
F 6 HOH A 209 709 178 HOH HOH . 
F 6 HOH A 210 710 165 HOH HOH . 
F 6 HOH A 211 711 176 HOH HOH . 
F 6 HOH A 212 712 190 HOH HOH . 
F 6 HOH A 213 713 170 HOH HOH . 
F 6 HOH A 214 714 175 HOH HOH . 
F 6 HOH A 215 715 171 HOH HOH . 
F 6 HOH A 216 716 169 HOH HOH . 
F 6 HOH A 217 717 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . E 5 20.347 14.288 -20.798 1 28.92 ? C1 PEG 404 A 1 
HETATM 2 O O1 PEG . . . E 5 19.494 13.275 -20.254 1 28.41 ? O1 PEG 404 A 1 
HETATM 3 C C2 PEG . . . E 5 21.472 14.514 -19.831 1 26.93 ? C2 PEG 404 A 1 
HETATM 4 O O2 PEG . . . E 5 20.957 15.423 -18.869 1 25.98 ? O2 PEG 404 A 1 
HETATM 5 C C3 PEG . . . E 5 21.696 15.609 -17.709 1 27.79 ? C3 PEG 404 A 1 
HETATM 6 C C4 PEG . . . E 5 22.791 16.599 -17.948 1 28.49 ? C4 PEG 404 A 1 
HETATM 7 O O4 PEG . . . E 5 23.117 16.951 -16.617 1 26.92 ? O4 PEG 404 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#