data_5C8S # _model_server_result.job_id wPscKiKiQpdxdNUu3le41A _model_server_result.datetime_utc '2024-10-28 02:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":606}' # _entry.id 5C8S # _exptl.entry_id 5C8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 772.406 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8S _cell.length_a 188.797 _cell.length_b 196.84 _cell.length_c 180.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L 1 1 C,D,M,N,O,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 79 A CYS 74 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 A SG CYS 82 A CYS 77 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A NE2 HIS 88 A HIS 83 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A SG CYS 95 A CYS 90 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 A SG CYS 122 A CYS 117 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A SG CYS 125 A CYS 120 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 A SG CYS 133 A CYS 128 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 A SG CYS 135 A CYS 130 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 B OD1 ASP 90 B ASP 90 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 B OE1 GLU 191 B GLU 191 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc11 B OE2 GLU 191 B GLU 191 1_555 J MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc12 B SG CYS 207 B CYS 207 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc13 B SG CYS 210 B CYS 210 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? covale ? covale1 B SG CYS 226 B CYS 226 1_555 B CD2 HIS 229 B HIS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc14 B SG CYS 226 B CYS 226 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc15 B NE2 HIS 229 B HIS 229 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc16 B NE2 HIS 257 B HIS 257 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc17 B SG CYS 261 B CYS 261 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc18 B ND1 HIS 264 B HIS 264 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc19 B SG CYS 279 B CYS 279 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc20 B SG CYS 452 B CYS 452 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc21 B SG CYS 477 B CYS 477 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc22 B SG CYS 484 B CYS 484 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc23 B ND1 HIS 487 B HIS 487 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc24 B NE2 HIS 487 B HIS 487 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc25 C SG CYS 79 C CYS 74 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc26 C SG CYS 82 C CYS 77 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc27 C NE2 HIS 88 C HIS 83 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc28 C SG CYS 95 C CYS 90 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc29 C SG CYS 122 C CYS 117 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc30 C SG CYS 125 C CYS 120 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc31 C SG CYS 133 C CYS 128 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc32 C SG CYS 135 C CYS 130 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc33 D OD1 ASP 90 D ASP 90 1_555 R MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc34 D OE1 GLU 191 D GLU 191 1_555 R MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc35 D OE2 GLU 191 D GLU 191 1_555 R MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc36 D SG CYS 207 D CYS 207 1_555 O ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc37 D SG CYS 210 D CYS 210 1_555 O ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc38 D SG CYS 226 D CYS 226 1_555 O ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc39 D NE2 HIS 229 D HIS 229 1_555 O ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc40 D NE2 HIS 257 D HIS 257 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc41 D SG CYS 261 D CYS 261 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc42 D SG CYS 279 D CYS 279 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc43 D SG CYS 452 D CYS 452 1_555 Q ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc44 D SG CYS 477 D CYS 477 1_555 Q ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc45 D SG CYS 484 D CYS 484 1_555 Q ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc46 D ND1 HIS 487 D HIS 487 1_555 Q ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H27 N10 O17 P3' _chem_comp.formula_weight 772.406 _chem_comp.id G3A _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C8S _atom_sites.fract_transf_matrix[1][1] 0.005297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 201 150 ZN ZN . F 3 ZN A 1 202 151 ZN ZN . G 3 ZN B 1 601 530 ZN ZN . H 3 ZN B 1 602 531 ZN ZN . I 3 ZN B 1 603 532 ZN ZN . J 4 MG B 1 604 533 MG MG . K 5 SAH B 1 605 540 SAH SAH . L 6 G3A B 1 606 541 G3A G3A . M 3 ZN C 1 201 150 ZN ZN . N 3 ZN C 1 202 151 ZN ZN . O 3 ZN D 1 601 530 ZN ZN . P 3 ZN D 1 602 531 ZN ZN . Q 3 ZN D 1 603 532 ZN ZN . R 4 MG D 1 604 533 MG MG . S 5 SAH D 1 605 540 SAH SAH . T 6 G3A D 1 606 541 G3A G3A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 G3A . . . T 6 8.5 -27.081 11.896 1 126.08 ? O36 G3A 606 D 1 HETATM 2 C C36 G3A . . . T 6 8.333 -26.271 10.751 1 128.42 ? C36 G3A 606 D 1 HETATM 3 N N31 G3A . . . T 6 8.772 -25.001 10.726 1 133.33 ? N31 G3A 606 D 1 HETATM 4 C C32 G3A . . . T 6 8.61 -24.22 9.636 1 138.75 ? C32 G3A 606 D 1 HETATM 5 N N32 G3A . . . T 6 9.103 -22.823 9.642 1 134.68 ? N32 G3A 606 D 1 HETATM 6 N N33 G3A . . . T 6 8.001 -24.683 8.526 1 124.02 ? N33 G3A 606 D 1 HETATM 7 C C35 G3A . . . T 6 7.699 -26.779 9.603 1 125.45 ? C35 G3A 606 D 1 HETATM 8 C C34 G3A . . . T 6 7.547 -25.951 8.49 1 122.37 ? C34 G3A 606 D 1 HETATM 9 N N37 G3A . . . T 6 7.148 -27.966 9.266 1 133.72 ? N37 G3A 606 D 1 HETATM 10 C C38 G3A . . . T 6 6.673 -27.909 8.002 1 121.68 ? C38 G3A 606 D 1 HETATM 11 N N39 G3A . . . T 6 6.912 -26.683 7.536 1 124.94 ? N39 G3A 606 D 1 HETATM 12 C C41 G3A . . . T 6 6.598 -26.164 6.268 1 128.05 ? C41 G3A 606 D 1 HETATM 13 O O44 G3A . . . T 6 5.267 -25.784 6.278 1 122.3 ? O44 G3A 606 D 1 HETATM 14 C C42 G3A . . . T 6 6.803 -27.103 5.17 1 135.55 ? C42 G3A 606 D 1 HETATM 15 O O42 G3A . . . T 6 7.96 -26.781 4.502 1 120.35 ? O42 G3A 606 D 1 HETATM 16 C C43 G3A . . . T 6 5.63 -26.945 4.328 1 130.71 ? C43 G3A 606 D 1 HETATM 17 O O43 G3A . . . T 6 5.869 -25.953 3.372 1 128.09 ? O43 G3A 606 D 1 HETATM 18 C C44 G3A . . . T 6 4.594 -26.503 5.224 1 125.34 ? C44 G3A 606 D 1 HETATM 19 C C45 G3A . . . T 6 3.846 -27.627 5.787 1 119.58 ? C45 G3A 606 D 1 HETATM 20 O O45 G3A . . . T 6 3.858 -28.824 5.109 1 131.09 ? O45 G3A 606 D 1 HETATM 21 P PA G3A . . . T 6 2.9 -29.988 5.639 1 148.89 ? PA G3A 606 D 1 HETATM 22 O O1A G3A . . . T 6 3.708 -31.147 6.272 1 133.62 -1 O1A G3A 606 D 1 HETATM 23 O O2A G3A . . . T 6 2.009 -29.359 6.731 1 132.75 ? O2A G3A 606 D 1 HETATM 24 O O1 G3A . . . T 6 1.944 -30.503 4.473 1 140.11 ? O1 G3A 606 D 1 HETATM 25 P PB G3A . . . T 6 2.41 -30.866 3.022 1 143.12 ? PB G3A 606 D 1 HETATM 26 O O2B G3A . . . T 6 3.82 -30.29 2.781 1 129.59 ? O2B G3A 606 D 1 HETATM 27 O O3B G3A . . . T 6 1.445 -30.256 1.973 1 146.05 -1 O3B G3A 606 D 1 HETATM 28 O O3A G3A . . . T 6 2.416 -32.371 2.811 1 159.02 ? O3A G3A 606 D 1 HETATM 29 P PG G3A . . . T 6 1.112 -33.395 2.955 1 158.93 ? PG G3A 606 D 1 HETATM 30 O O1G G3A . . . T 6 -0.213 -32.587 3.207 1 145.91 -1 O1G G3A 606 D 1 HETATM 31 O O2G G3A . . . T 6 0.955 -34.115 1.623 1 138.56 ? O2G G3A 606 D 1 HETATM 32 O O25 G3A . . . T 6 1.322 -34.41 4.085 1 136.88 ? O25 G3A 606 D 1 HETATM 33 C C25 G3A . . . T 6 2.523 -34.543 4.855 1 150.28 ? C25 G3A 606 D 1 HETATM 34 C C24 G3A . . . T 6 3.654 -35.415 4.43 1 166.66 ? C24 G3A 606 D 1 HETATM 35 C C23 G3A . . . T 6 4.385 -35.937 5.592 1 160.39 ? C23 G3A 606 D 1 HETATM 36 O O23 G3A . . . T 6 4.086 -37.25 5.784 1 155.3 ? O23 G3A 606 D 1 HETATM 37 C C22 G3A . . . T 6 5.783 -35.807 5.297 1 163.18 ? C22 G3A 606 D 1 HETATM 38 O O22 G3A . . . T 6 6.357 -37.073 5.082 1 154.73 ? O22 G3A 606 D 1 HETATM 39 O O24 G3A . . . T 6 4.611 -34.692 3.656 1 165.65 ? O24 G3A 606 D 1 HETATM 40 C C21 G3A . . . T 6 5.901 -35.001 4.083 1 157.31 ? C21 G3A 606 D 1 HETATM 41 N N19 G3A . . . T 6 6.675 -33.809 4.351 1 160.72 ? N19 G3A 606 D 1 HETATM 42 C C14 G3A . . . T 6 6.691 -32.676 3.62 1 157.1 ? C14 G3A 606 D 1 HETATM 43 N N13 G3A . . . T 6 6.079 -32.254 2.497 1 150.41 ? N13 G3A 606 D 1 HETATM 44 C C12 G3A . . . T 6 6.314 -31.027 1.998 1 145.79 ? C12 G3A 606 D 1 HETATM 45 N N11 G3A . . . T 6 7.162 -30.16 2.59 1 142.86 ? N11 G3A 606 D 1 HETATM 46 C C18 G3A . . . T 6 7.51 -33.64 5.385 1 156.42 ? C18 G3A 606 D 1 HETATM 47 N N17 G3A . . . T 6 8.065 -32.42 5.352 1 155.68 ? N17 G3A 606 D 1 HETATM 48 C C15 G3A . . . T 6 7.581 -31.793 4.26 1 161.41 ? C15 G3A 606 D 1 HETATM 49 C C16 G3A . . . T 6 7.804 -30.519 3.715 1 154.14 ? C16 G3A 606 D 1 HETATM 50 N N16 G3A . . . T 6 8.74 -29.582 4.387 1 145.9 ? N16 G3A 606 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 50 #