data_5C8Y # _model_server_result.job_id LIylRfU2djwjqot3f03geQ _model_server_result.datetime_utc '2024-11-27 07:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":501}' # _entry.id 5C8Y # _exptl.entry_id 5C8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C8Y _cell.length_a 105.06 _cell.length_b 158.444 _cell.length_c 181.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 H MG MG . A MG 502 1_555 T O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 H MG MG . A MG 502 1_555 U O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc14 K MG MG . B MG 502 1_555 V O HOH . C HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc15 C OD1 ASP 39 C ASP 39 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc17 C O THR 41 C THR 41 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc19 C O GLY 44 C GLY 44 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc20 C OE1 GLU 55 C GLU 55 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 P CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc22 N O1G GTP . C GTP 501 1_555 O MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc23 N O1B GTP . C GTP 501 1_555 O MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc24 O MG MG . C MG 502 1_555 V O HOH . C HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc25 O MG MG . C MG 502 1_555 V O HOH . C HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 134 n n PB O2B GDP sing 135 n n PB O3B GDP sing 136 n n PB O3A GDP sing 137 n n O2B HOB2 GDP sing 138 n n O3B HOB3 GDP sing 139 n n O3A PA GDP sing 140 n n PA O1A GDP doub 141 n n PA O2A GDP sing 142 n n PA O5' GDP sing 143 n n O2A HOA2 GDP sing 144 n n O5' C5' GDP sing 145 n n C5' C4' GDP sing 146 n n C5' H5' GDP sing 147 n n C5' "H5''" GDP sing 148 n n C4' O4' GDP sing 149 n n C4' C3' GDP sing 150 n n C4' H4' GDP sing 151 n n O4' C1' GDP sing 152 n n C3' O3' GDP sing 153 n n C3' C2' GDP sing 154 n n C3' H3' GDP sing 155 n n O3' HO3' GDP sing 156 n n C2' O2' GDP sing 157 n n C2' C1' GDP sing 158 n n C2' H2' GDP sing 159 n n O2' HO2' GDP sing 160 n n C1' N9 GDP sing 161 n n C1' H1' GDP sing 162 n n N9 C8 GDP sing 163 n y N9 C4 GDP sing 164 n y C8 N7 GDP doub 165 n y C8 H8 GDP sing 166 n n N7 C5 GDP sing 167 n y C5 C6 GDP sing 168 n n C5 C4 GDP doub 169 n y C6 O6 GDP doub 170 n n C6 N1 GDP sing 171 n n N1 C2 GDP sing 172 n n N1 HN1 GDP sing 173 n n C2 N2 GDP sing 174 n n C2 N3 GDP doub 175 n n N2 HN21 GDP sing 176 n n N2 HN22 GDP sing 177 n n N3 C4 GDP sing 178 n n # _atom_sites.entry_id 5C8Y _atom_sites.fract_transf_matrix[1][1] 0.009518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 MES B 1 503 505 MES MES . M 10 PN6 B 1 504 1 PN6 PN6 . N 5 GTP C 1 501 501 GTP GTP . O 6 MG C 1 502 502 MG MG . P 7 CA C 1 503 504 CA CA . Q 8 GDP D 1 501 501 GDP GDP . R 10 PN6 D 1 502 2 PN6 PN6 . S 11 ACP F 1 401 401 ACP ACP . T 12 HOH A 1 601 1005 HOH HOH . T 12 HOH A 2 602 1234 HOH HOH . T 12 HOH A 3 603 1171 HOH HOH . T 12 HOH A 4 604 1265 HOH HOH . T 12 HOH A 5 605 1050 HOH HOH . T 12 HOH A 6 606 1080 HOH HOH . T 12 HOH A 7 607 1072 HOH HOH . T 12 HOH A 8 608 1166 HOH HOH . T 12 HOH A 9 609 1044 HOH HOH . T 12 HOH A 10 610 1108 HOH HOH . T 12 HOH A 11 611 1052 HOH HOH . T 12 HOH A 12 612 1024 HOH HOH . T 12 HOH A 13 613 1105 HOH HOH . T 12 HOH A 14 614 1126 HOH HOH . T 12 HOH A 15 615 1033 HOH HOH . T 12 HOH A 16 616 1060 HOH HOH . T 12 HOH A 17 617 1214 HOH HOH . T 12 HOH A 18 618 1007 HOH HOH . T 12 HOH A 19 619 1027 HOH HOH . T 12 HOH A 20 620 1083 HOH HOH . T 12 HOH A 21 621 1249 HOH HOH . T 12 HOH A 22 622 1119 HOH HOH . T 12 HOH A 23 623 1203 HOH HOH . T 12 HOH A 24 624 1036 HOH HOH . T 12 HOH A 25 625 1139 HOH HOH . T 12 HOH A 26 626 1187 HOH HOH . T 12 HOH A 27 627 1034 HOH HOH . T 12 HOH A 28 628 1184 HOH HOH . T 12 HOH A 29 629 1001 HOH HOH . T 12 HOH A 30 630 1192 HOH HOH . T 12 HOH A 31 631 1045 HOH HOH . T 12 HOH A 32 632 1208 HOH HOH . T 12 HOH A 33 633 1009 HOH HOH . T 12 HOH A 34 634 1143 HOH HOH . T 12 HOH A 35 635 1117 HOH HOH . T 12 HOH A 36 636 1222 HOH HOH . T 12 HOH A 37 637 1077 HOH HOH . T 12 HOH A 38 638 1099 HOH HOH . T 12 HOH A 39 639 1047 HOH HOH . T 12 HOH A 40 640 1114 HOH HOH . T 12 HOH A 41 641 1023 HOH HOH . T 12 HOH A 42 642 1149 HOH HOH . T 12 HOH A 43 643 1264 HOH HOH . T 12 HOH A 44 644 1042 HOH HOH . T 12 HOH A 45 645 1014 HOH HOH . T 12 HOH A 46 646 1082 HOH HOH . T 12 HOH A 47 647 1141 HOH HOH . T 12 HOH A 48 648 1175 HOH HOH . T 12 HOH A 49 649 1220 HOH HOH . T 12 HOH A 50 650 1135 HOH HOH . T 12 HOH A 51 651 1262 HOH HOH . T 12 HOH A 52 652 1254 HOH HOH . T 12 HOH A 53 653 1176 HOH HOH . T 12 HOH A 54 654 1064 HOH HOH . T 12 HOH A 55 655 1118 HOH HOH . T 12 HOH A 56 656 1107 HOH HOH . T 12 HOH A 57 657 1039 HOH HOH . T 12 HOH A 58 658 1084 HOH HOH . T 12 HOH A 59 659 1211 HOH HOH . T 12 HOH A 60 660 1161 HOH HOH . T 12 HOH A 61 661 1137 HOH HOH . T 12 HOH A 62 662 1193 HOH HOH . T 12 HOH A 63 663 1131 HOH HOH . T 12 HOH A 64 664 1079 HOH HOH . T 12 HOH A 65 665 1243 HOH HOH . T 12 HOH A 66 666 1217 HOH HOH . T 12 HOH A 67 667 1156 HOH HOH . T 12 HOH A 68 668 1169 HOH HOH . U 12 HOH B 1 601 1190 HOH HOH . U 12 HOH B 2 602 1013 HOH HOH . U 12 HOH B 3 603 1041 HOH HOH . U 12 HOH B 4 604 1012 HOH HOH . U 12 HOH B 5 605 1233 HOH HOH . U 12 HOH B 6 606 1032 HOH HOH . U 12 HOH B 7 607 1212 HOH HOH . U 12 HOH B 8 608 1103 HOH HOH . U 12 HOH B 9 609 1189 HOH HOH . U 12 HOH B 10 610 1252 HOH HOH . U 12 HOH B 11 611 1256 HOH HOH . U 12 HOH B 12 612 1191 HOH HOH . U 12 HOH B 13 613 1018 HOH HOH . U 12 HOH B 14 614 1224 HOH HOH . U 12 HOH B 15 615 1109 HOH HOH . U 12 HOH B 16 616 1004 HOH HOH . U 12 HOH B 17 617 1088 HOH HOH . U 12 HOH B 18 618 1250 HOH HOH . U 12 HOH B 19 619 1020 HOH HOH . U 12 HOH B 20 620 1127 HOH HOH . U 12 HOH B 21 621 1225 HOH HOH . U 12 HOH B 22 622 1021 HOH HOH . U 12 HOH B 23 623 1010 HOH HOH . U 12 HOH B 24 624 1165 HOH HOH . U 12 HOH B 25 625 1040 HOH HOH . U 12 HOH B 26 626 1089 HOH HOH . U 12 HOH B 27 627 1037 HOH HOH . U 12 HOH B 28 628 1263 HOH HOH . U 12 HOH B 29 629 1152 HOH HOH . U 12 HOH B 30 630 1081 HOH HOH . U 12 HOH B 31 631 1094 HOH HOH . U 12 HOH B 32 632 1257 HOH HOH . U 12 HOH B 33 633 1198 HOH HOH . U 12 HOH B 34 634 1183 HOH HOH . U 12 HOH B 35 635 1075 HOH HOH . U 12 HOH B 36 636 1097 HOH HOH . U 12 HOH B 37 637 1255 HOH HOH . U 12 HOH B 38 638 1202 HOH HOH . U 12 HOH B 39 639 1147 HOH HOH . U 12 HOH B 40 640 1125 HOH HOH . U 12 HOH B 41 641 1095 HOH HOH . U 12 HOH B 42 642 1113 HOH HOH . U 12 HOH B 43 643 1253 HOH HOH . U 12 HOH B 44 644 1070 HOH HOH . U 12 HOH B 45 645 1258 HOH HOH . U 12 HOH B 46 646 1186 HOH HOH . U 12 HOH B 47 647 1073 HOH HOH . U 12 HOH B 48 648 1236 HOH HOH . U 12 HOH B 49 649 1245 HOH HOH . V 12 HOH C 1 601 1003 HOH HOH . V 12 HOH C 2 602 1061 HOH HOH . V 12 HOH C 3 603 1209 HOH HOH . V 12 HOH C 4 604 1177 HOH HOH . V 12 HOH C 5 605 1065 HOH HOH . V 12 HOH C 6 606 1057 HOH HOH . V 12 HOH C 7 607 1227 HOH HOH . V 12 HOH C 8 608 1194 HOH HOH . V 12 HOH C 9 609 1062 HOH HOH . V 12 HOH C 10 610 1011 HOH HOH . V 12 HOH C 11 611 1046 HOH HOH . V 12 HOH C 12 612 1195 HOH HOH . V 12 HOH C 13 613 1071 HOH HOH . V 12 HOH C 14 614 1049 HOH HOH . V 12 HOH C 15 615 1116 HOH HOH . V 12 HOH C 16 616 1121 HOH HOH . V 12 HOH C 17 617 1111 HOH HOH . V 12 HOH C 18 618 1051 HOH HOH . V 12 HOH C 19 619 1129 HOH HOH . V 12 HOH C 20 620 1241 HOH HOH . V 12 HOH C 21 621 1017 HOH HOH . V 12 HOH C 22 622 1016 HOH HOH . V 12 HOH C 23 623 1112 HOH HOH . V 12 HOH C 24 624 1026 HOH HOH . V 12 HOH C 25 625 1240 HOH HOH . V 12 HOH C 26 626 1006 HOH HOH . V 12 HOH C 27 627 1153 HOH HOH . V 12 HOH C 28 628 1229 HOH HOH . V 12 HOH C 29 629 1163 HOH HOH . V 12 HOH C 30 630 1120 HOH HOH . V 12 HOH C 31 631 1053 HOH HOH . V 12 HOH C 32 632 1087 HOH HOH . V 12 HOH C 33 633 1076 HOH HOH . V 12 HOH C 34 634 1207 HOH HOH . V 12 HOH C 35 635 1150 HOH HOH . V 12 HOH C 36 636 1221 HOH HOH . V 12 HOH C 37 637 1028 HOH HOH . V 12 HOH C 38 638 1054 HOH HOH . V 12 HOH C 39 639 1078 HOH HOH . V 12 HOH C 40 640 1091 HOH HOH . V 12 HOH C 41 641 1210 HOH HOH . V 12 HOH C 42 642 1059 HOH HOH . V 12 HOH C 43 643 1030 HOH HOH . V 12 HOH C 44 644 1063 HOH HOH . V 12 HOH C 45 645 1142 HOH HOH . V 12 HOH C 46 646 1025 HOH HOH . V 12 HOH C 47 647 1179 HOH HOH . V 12 HOH C 48 648 1164 HOH HOH . V 12 HOH C 49 649 1066 HOH HOH . V 12 HOH C 50 650 1043 HOH HOH . V 12 HOH C 51 651 1035 HOH HOH . V 12 HOH C 52 652 1031 HOH HOH . V 12 HOH C 53 653 1123 HOH HOH . V 12 HOH C 54 654 1008 HOH HOH . V 12 HOH C 55 655 1104 HOH HOH . V 12 HOH C 56 656 1122 HOH HOH . V 12 HOH C 57 657 1102 HOH HOH . V 12 HOH C 58 658 1154 HOH HOH . V 12 HOH C 59 659 1226 HOH HOH . V 12 HOH C 60 660 1237 HOH HOH . V 12 HOH C 61 661 1019 HOH HOH . V 12 HOH C 62 662 1261 HOH HOH . V 12 HOH C 63 663 1100 HOH HOH . V 12 HOH C 64 664 1110 HOH HOH . V 12 HOH C 65 665 1160 HOH HOH . V 12 HOH C 66 666 1199 HOH HOH . V 12 HOH C 67 667 1196 HOH HOH . V 12 HOH C 68 668 1092 HOH HOH . V 12 HOH C 69 669 1239 HOH HOH . V 12 HOH C 70 670 1228 HOH HOH . V 12 HOH C 71 671 1144 HOH HOH . V 12 HOH C 72 672 1124 HOH HOH . V 12 HOH C 73 673 1138 HOH HOH . V 12 HOH C 74 674 1168 HOH HOH . V 12 HOH C 75 675 1055 HOH HOH . V 12 HOH C 76 676 1158 HOH HOH . V 12 HOH C 77 677 1132 HOH HOH . V 12 HOH C 78 678 1162 HOH HOH . V 12 HOH C 79 679 1200 HOH HOH . V 12 HOH C 80 680 1146 HOH HOH . V 12 HOH C 81 681 1205 HOH HOH . V 12 HOH C 82 682 1106 HOH HOH . V 12 HOH C 83 683 1178 HOH HOH . V 12 HOH C 84 684 1172 HOH HOH . V 12 HOH C 85 685 1260 HOH HOH . V 12 HOH C 86 686 1188 HOH HOH . V 12 HOH C 87 687 1238 HOH HOH . V 12 HOH C 88 688 1219 HOH HOH . V 12 HOH C 89 689 1231 HOH HOH . W 12 HOH D 1 1201 1201 HOH HOH . W 12 HOH D 2 1202 1022 HOH HOH . W 12 HOH D 3 1203 1130 HOH HOH . W 12 HOH D 4 1204 1206 HOH HOH . W 12 HOH D 5 1205 1244 HOH HOH . W 12 HOH D 6 1206 1128 HOH HOH . W 12 HOH D 7 1207 1002 HOH HOH . W 12 HOH D 8 1208 1197 HOH HOH . W 12 HOH D 9 1209 1266 HOH HOH . W 12 HOH D 10 1210 1155 HOH HOH . W 12 HOH D 11 1211 1096 HOH HOH . W 12 HOH D 12 1212 1170 HOH HOH . W 12 HOH D 13 1213 1074 HOH HOH . W 12 HOH D 14 1214 1181 HOH HOH . W 12 HOH D 15 1215 1145 HOH HOH . W 12 HOH D 16 1216 1242 HOH HOH . W 12 HOH D 17 1217 1069 HOH HOH . W 12 HOH D 18 1218 1247 HOH HOH . W 12 HOH D 19 1219 1157 HOH HOH . W 12 HOH D 20 1220 1098 HOH HOH . X 12 HOH E 1 201 1216 HOH HOH . X 12 HOH E 2 202 1093 HOH HOH . X 12 HOH E 3 203 1223 HOH HOH . X 12 HOH E 4 204 1204 HOH HOH . X 12 HOH E 5 205 1133 HOH HOH . X 12 HOH E 6 206 1085 HOH HOH . X 12 HOH E 7 207 1115 HOH HOH . X 12 HOH E 8 208 1213 HOH HOH . X 12 HOH E 9 209 1251 HOH HOH . X 12 HOH E 10 210 1235 HOH HOH . X 12 HOH E 11 211 1151 HOH HOH . X 12 HOH E 12 212 1090 HOH HOH . X 12 HOH E 13 213 1159 HOH HOH . Y 12 HOH F 1 501 1056 HOH HOH . Y 12 HOH F 2 502 1068 HOH HOH . Y 12 HOH F 3 503 1048 HOH HOH . Y 12 HOH F 4 504 1230 HOH HOH . Y 12 HOH F 5 505 1246 HOH HOH . Y 12 HOH F 6 506 1029 HOH HOH . Y 12 HOH F 7 507 1140 HOH HOH . Y 12 HOH F 8 508 1215 HOH HOH . Y 12 HOH F 9 509 1067 HOH HOH . Y 12 HOH F 10 510 1015 HOH HOH . Y 12 HOH F 11 511 1038 HOH HOH . Y 12 HOH F 12 512 1058 HOH HOH . Y 12 HOH F 13 513 1148 HOH HOH . Y 12 HOH F 14 514 1134 HOH HOH . Y 12 HOH F 15 515 1174 HOH HOH . Y 12 HOH F 16 516 1173 HOH HOH . Y 12 HOH F 17 517 1086 HOH HOH . Y 12 HOH F 18 518 1101 HOH HOH . Y 12 HOH F 19 519 1232 HOH HOH . Y 12 HOH F 20 520 1167 HOH HOH . Y 12 HOH F 21 521 1218 HOH HOH . Y 12 HOH F 22 522 1248 HOH HOH . Y 12 HOH F 23 523 1259 HOH HOH . Y 12 HOH F 24 524 1180 HOH HOH . Y 12 HOH F 25 525 1136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . Q 8 -25.493 10.594 -43.299 1 89.63 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . Q 8 -25.71 11.782 -44.206 1 85.53 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . Q 8 -26.812 10.182 -42.695 1 86.96 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . Q 8 -24.917 9.445 -44.09 1 96.4 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . Q 8 -24.488 10.987 -42.106 1 63.04 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . Q 8 -22.987 11.495 -42.386 1 58.33 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . Q 8 -22.904 12.289 -43.668 1 111.3 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . Q 8 -22.036 10.323 -42.413 1 50.93 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . Q 8 -22.678 12.422 -41.108 1 43.07 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . Q 8 -21.698 13.455 -41.174 1 82.54 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . Q 8 -20.814 13.359 -39.937 1 46.82 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . Q 8 -20.136 12.102 -39.959 1 47.35 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . Q 8 -19.76 14.45 -39.875 1 68.07 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . Q 8 -19.917 15.151 -38.639 1 62.37 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . Q 8 -18.411 13.756 -39.973 1 61.43 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . Q 8 -17.526 14.125 -38.91 1 93.96 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . Q 8 -18.718 12.271 -39.894 1 61.03 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . Q 8 -18.1 11.544 -41.026 1 55.54 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . Q 8 -18.6 11.486 -42.275 1 64.14 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . Q 8 -17.8 10.733 -43.072 1 72.65 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . Q 8 -16.77 10.298 -42.323 1 45.06 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . Q 8 -15.571 9.462 -42.548 1 66.64 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . Q 8 -15.338 8.974 -43.673 1 100.73 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . Q 8 -14.749 9.246 -41.514 1 71.74 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . Q 8 -14.983 9.764 -40.291 1 62.74 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . Q 8 -14.104 9.5 -39.292 1 48.51 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . Q 8 -16.063 10.539 -40.012 1 35.87 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . Q 8 -16.972 10.834 -40.972 1 46.51 ? C4 GDP 501 D 1 HETATM 29 H H4' GDP . . . Q 8 -21.449 13.427 -39.042 1 56.19 ? H4' GDP 501 D 1 HETATM 30 H H3' GDP . . . Q 8 -19.887 15.131 -40.728 1 81.68 ? H3' GDP 501 D 1 HETATM 31 H HO3' GDP . . . Q 8 -19.28 15.877 -38.597 1 74.85 ? HO3' GDP 501 D 1 HETATM 32 H H2' GDP . . . Q 8 -17.957 13.981 -40.948 1 73.71 ? H2' GDP 501 D 1 HETATM 33 H HO2' GDP . . . Q 8 -17.382 15.081 -38.928 1 112.76 ? HO2' GDP 501 D 1 HETATM 34 H H1' GDP . . . Q 8 -18.336 11.879 -38.941 1 73.24 ? H1' GDP 501 D 1 HETATM 35 H H8 GDP . . . Q 8 -19.512 11.972 -42.598 1 76.97 ? H8 GDP 501 D 1 HETATM 36 H HN1 GDP . . . Q 8 -13.902 8.66 -41.659 1 86.09 ? HN1 GDP 501 D 1 HETATM 37 H HN21 GDP . . . Q 8 -13.292 8.926 -39.472 1 58.22 ? HN21 GDP 501 D 1 HETATM 38 H HN22 GDP . . . Q 8 -14.261 9.878 -38.369 1 58.22 ? HN22 GDP 501 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #