data_5C93
#
_model_server_result.job_id            FUXDCIkOKFqVyY_N8z3LAQ 
_model_server_result.datetime_utc      '2024-12-01 01:22:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":701}' 
#
_entry.id    5C93 
#
_exptl.entry_id    5C93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C93 
_cell.length_a            54.645 
_cell.length_b            97.757 
_cell.length_c            117.342 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     5C93 
_atom_sites.fract_transf_matrix[1][1]    0.0183 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008522 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACP A 1 701 3 ACP ACP . 
D 3 SO4 A 1 702 2 SO4 SO4 . 
E 3 SO4 A 1 703 3 SO4 SO4 . 
F 3 SO4 A 1 704 4 SO4 SO4 . 
G 2 ACP B 1 701 2 ACP ACP . 
H 3 SO4 B 1 702 1 SO4 SO4 . 
I 4 HOH A 1 801 4 HOH HOH . 
I 4 HOH A 2 802 1 HOH HOH . 
J 4 HOH B 1 801 2 HOH HOH . 
J 4 HOH B 2 802 3 HOH HOH . 
J 4 HOH B 3 803 6 HOH HOH . 
J 4 HOH B 4 804 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . G 2 14.816 -14.856 -3.346 1 98.94 ? PG ACP 701 B 1 
HETATM 2 O O1G ACP . . . G 2 14.151 -15.849 -4.424 1 116.67 ? O1G ACP 701 B 1 
HETATM 3 O O2G ACP . . . G 2 15.466 -13.727 -4.049 1 107.01 ? O2G ACP 701 B 1 
HETATM 4 O O3G ACP . . . G 2 13.675 -14.289 -2.361 1 90.29 ? O3G ACP 701 B 1 
HETATM 5 P PB ACP . . . G 2 17.398 -16.297 -3.468 1 89.84 ? PB ACP 701 B 1 
HETATM 6 O O1B ACP . . . G 2 16.834 -17.378 -4.52 1 167.34 ? O1B ACP 701 B 1 
HETATM 7 O O2B ACP . . . G 2 17.938 -15.131 -4.202 1 91.09 ? O2B ACP 701 B 1 
HETATM 8 C C3B ACP . . . G 2 16.055 -15.757 -2.378 1 60.85 ? C3B ACP 701 B 1 
HETATM 9 P PA ACP . . . G 2 19.492 -16.057 -1.632 1 76.16 ? PA ACP 701 B 1 
HETATM 10 O O1A ACP . . . G 2 20.576 -15.432 -2.478 1 93.11 ? O1A ACP 701 B 1 
HETATM 11 O O2A ACP . . . G 2 18.59 -15.181 -0.796 1 79.47 ? O2A ACP 701 B 1 
HETATM 12 O O3A ACP . . . G 2 18.569 -16.966 -2.587 1 159.79 ? O3A ACP 701 B 1 
HETATM 13 O O5' ACP . . . G 2 20.175 -17.146 -0.663 1 108.88 ? O5' ACP 701 B 1 
HETATM 14 C C5' ACP . . . G 2 19.959 -17.098 0.746 1 100.3 ? C5' ACP 701 B 1 
HETATM 15 C C4' ACP . . . G 2 19.486 -18.462 1.234 1 97.86 ? C4' ACP 701 B 1 
HETATM 16 O O4' ACP . . . G 2 19.386 -18.456 2.66 1 96.82 ? O4' ACP 701 B 1 
HETATM 17 C C3' ACP . . . G 2 18.114 -18.802 0.672 1 98.52 ? C3' ACP 701 B 1 
HETATM 18 O O3' ACP . . . G 2 18.183 -20.008 -0.093 1 99.28 ? O3' ACP 701 B 1 
HETATM 19 C C2' ACP . . . G 2 17.202 -18.996 1.867 1 92.35 ? C2' ACP 701 B 1 
HETATM 20 O O2' ACP . . . G 2 16.681 -20.328 1.874 1 84.52 ? O2' ACP 701 B 1 
HETATM 21 C C1' ACP . . . G 2 18.06 -18.765 3.101 1 93.18 ? C1' ACP 701 B 1 
HETATM 22 N N9 ACP . . . G 2 17.515 -17.629 3.884 1 88.15 ? N9 ACP 701 B 1 
HETATM 23 C C8 ACP . . . G 2 17.786 -16.327 3.675 1 84.01 ? C8 ACP 701 B 1 
HETATM 24 N N7 ACP . . . G 2 17.128 -15.54 4.563 1 80.77 ? N7 ACP 701 B 1 
HETATM 25 C C5 ACP . . . G 2 16.413 -16.349 5.367 1 86.33 ? C5 ACP 701 B 1 
HETATM 26 C C6 ACP . . . G 2 15.494 -16.172 6.516 1 84.63 ? C6 ACP 701 B 1 
HETATM 27 N N6 ACP . . . G 2 15.201 -14.94 6.997 1 75.29 ? N6 ACP 701 B 1 
HETATM 28 N N1 ACP . . . G 2 14.958 -17.283 7.069 1 89.89 ? N1 ACP 701 B 1 
HETATM 29 C C2 ACP . . . G 2 15.241 -18.513 6.602 1 94.6 ? C2 ACP 701 B 1 
HETATM 30 N N3 ACP . . . G 2 16.064 -18.747 5.564 1 92.57 ? N3 ACP 701 B 1 
HETATM 31 C C4 ACP . . . G 2 16.671 -17.724 4.915 1 88.82 ? C4 ACP 701 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#