data_5C9A # _model_server_result.job_id veZpCxhE_d2odU2FEjP9Fg _model_server_result.datetime_utc '2024-10-13 02:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 5C9A # _exptl.entry_id 5C9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C9A _cell.length_a 491.4 _cell.length_b 491.4 _cell.length_c 708.9 _cell.Z_PDB 480 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 180-meric 180 'complete icosahedral assembly' 1 ? trimeric 3 'icosahedral asymmetric unit' 2 ? pentadecameric 15 'icosahedral pentamer' 3 ? octadecameric 18 'icosahedral 23 hexamer' 4 ? trimeric 3 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 (1-60) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 (1-5) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.573207 -0.200825 -0.79442 -0.795925 -0.366907 -0.481541 -0.194773 0.908322 -0.370155 94.15215 228.59359 -22.77029 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.544783 0.306225 0.780665 -0.77424 0.541279 0.327977 -0.322123 -0.783098 0.531971 -119.31464 94.41485 219.06038 3 'point symmetry operation' ? ? -0.191773 -0.278758 0.941019 -0.946522 -0.200946 -0.252421 0.259459 -0.939103 -0.225315 15.60964 309.74457 300.09213 4 'point symmetry operation' ? ? -0.191773 -0.946522 0.259459 -0.278758 -0.200946 -0.939103 0.941019 -0.252421 -0.225315 218.31208 348.41081 131.11213 5 'point symmetry operation' ? ? 0.544783 -0.77424 -0.322123 0.306225 0.541279 -0.783098 0.780665 0.327977 0.531971 208.66479 156.97813 -54.35501 6 'point symmetry operation' ? ? -0.924127 -0.353834 0.144193 -0.353834 0.650097 -0.67244 0.144193 -0.67244 -0.72597 255.94954 205.56158 369.74707 7 'point symmetry operation' ? ? -0.275944 -0.587431 -0.760776 -0.479485 0.770118 -0.420728 0.833036 0.248683 -0.494174 364.39117 161.85282 130.02316 8 'point symmetry operation' ? ? 0.549546 0.193297 -0.812795 -0.721946 0.59949 -0.345551 0.420468 0.77669 0.468998 175.19733 199.60815 -54.14476 9 'point symmetry operation' ? ? 0.411545 0.909411 0.060025 -0.746143 0.374015 -0.550802 -0.523356 0.181893 0.832475 -50.17252 266.65099 71.75712 10 'point symmetry operation' ? ? -0.499235 0.571265 0.651476 -0.518638 0.405291 -0.752831 -0.694103 -0.713719 0.093944 -0.26491 270.33041 333.73668 11 'point symmetry operation' ? ? 0.266994 0.584062 0.766541 0.584062 -0.730758 0.353362 0.766541 0.353362 -0.536237 -116.80742 79.18167 132.73562 12 'point symmetry operation' ? ? -0.553671 -0.202376 0.80777 0.770143 -0.493407 0.404264 0.316746 0.845928 0.429044 74.3992 17.90775 -42.82956 13 'point symmetry operation' ? ? -0.405144 -0.911653 -0.068895 0.671354 -0.347812 0.654454 -0.620598 0.218895 0.752956 298.30331 -32.00844 93.23264 14 'point symmetry operation' ? ? 0.507316 -0.563572 -0.651933 0.424218 -0.49518 0.758179 -0.750113 -0.661198 -0.012135 245.47704 -1.58441 352.88887 15 'point symmetry operation' ? ? 0.92272 0.360831 -0.135605 0.370268 -0.731854 0.572094 0.107186 -0.578093 -0.8089 -11.0755 67.13485 377.30306 16 'point symmetry operation' ? ? -0.342868 -0.230228 -0.910734 -0.230228 -0.919339 0.319079 -0.910734 0.319079 0.262206 355.01678 209.1109 203.29727 17 'point symmetry operation' ? ? 0.284832 0.483582 -0.827659 0.483582 -0.817991 -0.311512 -0.827659 -0.311512 -0.466841 174.68317 219.67873 399.52598 18 'point symmetry operation' ? ? 0.047371 0.997114 -0.059329 0.997114 -0.050732 -0.056482 -0.059329 -0.056482 -0.996639 5.04862 16.50986 366.59995 19 'point symmetry operation' ? ? -0.727088 0.600684 0.33245 0.600684 0.322112 0.731726 0.33245 0.731726 -0.595024 80.5423 -119.62324 150.02184 20 'point symmetry operation' ? ? -0.968268 -0.157856 -0.193748 -0.157856 -0.214717 0.963835 -0.193748 0.963835 0.182985 296.83452 -0.58925 49.09523 21 'point symmetry operation' ? ? -0.41285 0.751962 0.513915 -0.894155 -0.441999 -0.071579 0.173325 -0.489071 0.85485 -8.97437 301.12776 64.58088 22 'point symmetry operation' ? ? -0.972657 -0.12185 0.197716 -0.12185 -0.457004 -0.881079 0.197716 -0.881079 0.429661 223.85941 350.40209 184.9888 23 'point symmetry operation' ? ? -0.499235 -0.518638 -0.694103 0.571265 0.405291 -0.713719 0.651476 -0.752831 0.093944 371.71897 128.78309 172.33309 24 'point symmetry operation' ? ? 0.353162 0.109945 -0.92908 0.227328 0.953224 0.199214 0.907523 -0.281561 0.311649 230.26742 -57.45931 44.10352 25 'point symmetry operation' ? ? 0.406551 0.895219 -0.182483 -0.678351 0.429569 0.596079 0.61201 -0.118548 0.781914 -5.01401 49.05555 -22.49101 26 'point symmetry operation' ? ? 0.18956 0.289351 -0.938266 0.972385 0.077172 0.220252 0.136138 -0.954107 -0.266732 229.94965 -45.05501 324.48745 27 'point symmetry operation' ? ? 0.181479 0.949422 -0.256248 0.399041 0.167062 0.901586 0.898795 -0.265872 -0.34854 29.11453 -105.54017 159.73188 28 'point symmetry operation' ? ? -0.553671 0.770143 0.316746 -0.202376 -0.493407 0.845928 0.80777 0.404264 0.429044 40.96723 60.12315 -48.96114 29 'point symmetry operation' ? ? -0.999938 -0.000728 -0.011142 -0.000728 -0.991488 0.130195 -0.011142 0.130195 0.991426 249.12772 222.99387 -13.18494 30 'point symmetry operation' ? ? -0.540596 -0.297874 -0.786783 0.725314 -0.638851 -0.256494 -0.426234 -0.709324 0.561413 365.92528 157.99019 217.61898 31 'point symmetry operation' ? ? 0.7229 -0.609034 -0.326332 -0.551758 -0.224541 -0.803209 0.415907 0.760696 -0.49836 167.00597 361.07234 119.07876 32 'point symmetry operation' ? ? 0.970482 0.147263 0.190994 0.131992 0.338491 -0.931666 -0.20185 0.929375 0.309062 -48.23491 229.75383 32.10515 33 'point symmetry operation' ? ? 0.353162 0.227328 0.907523 0.109945 0.953224 -0.281561 -0.92908 0.199214 0.311649 -108.28449 41.87261 211.63868 34 'point symmetry operation' ? ? -0.275944 -0.479485 0.833036 -0.587431 0.770118 0.248683 -0.760776 -0.420728 -0.494174 69.84371 57.07413 409.57012 35 'point symmetry operation' ? ? -0.047433 -0.996385 0.070471 -0.996385 0.04222 -0.073713 0.070471 -0.073713 -0.994786 239.98257 254.35042 352.36495 36 'point symmetry operation' ? ? -0.49961 -0.432279 0.750683 0.473527 0.589368 0.654536 -0.725371 0.682482 -0.089758 106.17766 -123.29095 197.63286 37 'point symmetry operation' ? ? -0.179304 -0.974835 -0.132463 -0.409184 -0.048548 0.91116 -0.894661 0.217576 -0.390182 289.41987 19.23839 328.95413 38 'point symmetry operation' ? ? 0.699744 -0.478834 -0.530166 -0.478834 -0.865108 0.149353 -0.530166 0.149353 -0.834636 189.75719 263.0753 370.76932 39 'point symmetry operation' ? ? 0.92272 0.370268 0.107186 0.360831 -0.731854 -0.578093 -0.135605 0.572094 -0.8089 -55.07995 271.24545 265.29126 40 'point symmetry operation' ? ? 0.181479 0.399041 0.898795 0.949422 0.167062 -0.265872 -0.256248 0.901586 -0.34854 -106.73494 32.45798 158.28705 41 'point symmetry operation' ? ? -0.41285 -0.894155 0.173325 0.751962 -0.441999 -0.489071 0.513915 -0.071579 0.85485 254.35628 171.4313 -29.04045 42 'point symmetry operation' ? ? 0.411545 -0.746143 -0.523356 0.909411 0.374015 0.181893 0.060025 -0.550802 0.832475 257.16258 -67.15607 90.14759 43 'point symmetry operation' ? ? 0.970482 0.131992 -0.20185 0.147263 0.338491 0.929375 0.190994 -0.931666 0.309062 22.96578 -100.50406 213.34404 44 'point symmetry operation' ? ? 0.491529 0.526698 0.693533 -0.48122 -0.499479 0.720381 0.725828 -0.68783 0.00795 -124.5821 117.47312 170.2956 45 'point symmetry operation' ? ? -0.363417 -0.107495 0.925404 -0.107495 -0.981848 -0.156267 0.925404 -0.156267 0.345265 18.42509 285.53842 20.49375 46 'point symmetry operation' ? ? 0.7229 -0.551758 0.415907 -0.609034 -0.224541 0.760696 -0.326332 -0.803209 -0.49836 28.97007 92.20495 403.86008 47 'point symmetry operation' ? ? 0.687044 -0.402981 0.60463 -0.402981 -0.903741 -0.144427 0.60463 -0.144427 -0.783303 -18.26791 310.3101 257.79054 48 'point symmetry operation' ? ? 0.491529 -0.48122 0.725828 0.526698 -0.499479 -0.68783 0.693533 0.720381 0.00795 -5.83926 241.4269 0.42264 49 'point symmetry operation' ? ? 0.406551 -0.678351 0.61201 0.895219 0.429569 -0.118548 -0.182483 0.596079 0.781914 49.08006 -19.2504 -12.56991 50 'point symmetry operation' ? ? 0.549546 -0.721946 0.420468 0.193297 0.59949 0.77669 -0.812795 -0.345551 0.468998 70.59341 -111.47464 236.76814 51 'point symmetry operation' ? ? -0.49961 0.473527 -0.725371 -0.432279 0.589368 0.682482 0.750683 0.654536 -0.089758 254.78603 -16.31876 18.73176 52 'point symmetry operation' ? ? -0.405144 0.671354 -0.620598 -0.911653 -0.347812 0.218895 -0.068896 0.654454 0.752956 200.2048 240.40812 -28.70026 53 'point symmetry operation' ? ? -0.540596 0.725314 -0.426234 -0.297874 -0.638851 -0.709324 -0.786783 -0.256494 0.561413 175.98174 364.2943 206.25304 54 'point symmetry operation' ? ? -0.718775 0.560837 -0.410882 0.560837 0.118457 -0.819408 -0.410882 -0.819408 -0.399682 215.59229 184.1333 398.89419 55 'point symmetry operation' ? ? -0.693444 0.405223 -0.595759 0.47777 0.877538 0.040775 0.539324 -0.256361 -0.802128 264.29602 -51.09851 282.99967 56 'point symmetry operation' ? ? 0.18956 0.972386 0.136138 0.289351 0.077172 -0.954107 -0.938266 0.220252 -0.266732 -43.95348 246.53665 312.22856 57 'point symmetry operation' ? ? -0.693444 0.47777 0.539324 0.405223 0.877538 -0.256361 -0.595759 0.040775 -0.802128 55.05944 10.29199 386.5421 58 'point symmetry operation' ? ? -0.921415 -0.376087 -0.097745 -0.376087 0.799838 0.467779 -0.097745 0.467779 -0.878424 301.05064 -11.363 285.76023 59 'point symmetry operation' ? ? -0.179304 -0.409184 -0.894661 -0.974835 -0.048548 0.217576 -0.132463 0.91116 -0.390182 354.06865 211.49813 149.16008 60 'point symmetry operation' ? ? 0.507316 0.424218 -0.750113 -0.563572 -0.49518 -0.661198 -0.651933 0.758179 -0.012135 140.84438 370.88888 165.5184 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 189 A GLN 189 1_555 E K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc2 E K K . A K 302 1_555 C O VAL 20 C VAL 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C9A _atom_sites.fract_transf_matrix[1][1] 0.002035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SPH A 1 301 1 SPH SPH . E 5 K A 1 302 5 K K . F 6 CL A 1 303 7 CL CL . G 6 CL A 1 304 9 CL CL . H 6 CL B 1 401 1 CL CL . I 6 CL B 1 402 2 CL CL . J 6 CL B 1 403 3 CL CL . K 6 CL B 1 404 8 CL CL . L 6 CL C 1 301 6 CL CL . M 7 HOH A 1 401 14 HOH HOH . M 7 HOH A 2 402 25 HOH HOH . M 7 HOH A 3 403 31 HOH HOH . M 7 HOH A 4 404 15 HOH HOH . M 7 HOH A 5 405 11 HOH HOH . M 7 HOH A 6 406 45 HOH HOH . M 7 HOH A 7 407 13 HOH HOH . M 7 HOH A 8 408 30 HOH HOH . M 7 HOH A 9 409 22 HOH HOH . M 7 HOH A 10 410 20 HOH HOH . M 7 HOH A 11 411 29 HOH HOH . M 7 HOH A 12 412 7 HOH HOH . M 7 HOH A 13 413 12 HOH HOH . M 7 HOH A 14 414 23 HOH HOH . M 7 HOH A 15 415 24 HOH HOH . M 7 HOH A 16 416 18 HOH HOH . M 7 HOH A 17 417 8 HOH HOH . M 7 HOH A 18 418 4 HOH HOH . M 7 HOH A 19 419 17 HOH HOH . M 7 HOH A 20 420 9 HOH HOH . M 7 HOH A 21 421 19 HOH HOH . N 7 HOH B 1 501 33 HOH HOH . N 7 HOH B 2 502 40 HOH HOH . N 7 HOH B 3 503 38 HOH HOH . N 7 HOH B 4 504 36 HOH HOH . N 7 HOH B 5 505 57 HOH HOH . N 7 HOH B 6 506 5 HOH HOH . N 7 HOH B 7 507 44 HOH HOH . N 7 HOH B 8 508 39 HOH HOH . N 7 HOH B 9 509 21 HOH HOH . N 7 HOH B 10 510 2 HOH HOH . N 7 HOH B 11 511 1 HOH HOH . N 7 HOH B 12 512 35 HOH HOH . N 7 HOH B 13 513 37 HOH HOH . N 7 HOH B 14 514 43 HOH HOH . N 7 HOH B 15 515 46 HOH HOH . N 7 HOH B 16 516 47 HOH HOH . N 7 HOH B 17 517 34 HOH HOH . N 7 HOH B 18 518 3 HOH HOH . N 7 HOH B 19 519 41 HOH HOH . N 7 HOH B 20 520 42 HOH HOH . N 7 HOH B 21 521 6 HOH HOH . N 7 HOH B 22 522 48 HOH HOH . O 7 HOH C 1 401 51 HOH HOH . O 7 HOH C 2 402 49 HOH HOH . O 7 HOH C 3 403 54 HOH HOH . O 7 HOH C 4 404 55 HOH HOH . O 7 HOH C 5 405 26 HOH HOH . O 7 HOH C 6 406 28 HOH HOH . O 7 HOH C 7 407 27 HOH HOH . O 7 HOH C 8 408 52 HOH HOH . O 7 HOH C 9 409 50 HOH HOH . O 7 HOH C 10 410 53 HOH HOH . O 7 HOH C 11 411 10 HOH HOH . O 7 HOH C 12 412 16 HOH HOH . O 7 HOH C 13 413 32 HOH HOH . O 7 HOH C 14 414 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x 114.296 _atom_site.Cartn_y 214.806 _atom_site.Cartn_z 68.221 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #