data_5C9C
#
_model_server_result.job_id            1Y5RJcgmFtEBZZiQHd1QBQ 
_model_server_result.datetime_utc      '2025-02-05 17:00:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    5C9C 
#
_exptl.entry_id    5C9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              424.514 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(3,3-dimethylbutyl)-3-{2-fluoro-4-methyl-5-[7-methyl-2-(methylamino)pyrido[2,3-d]pyrimidin-6-yl]phenyl}urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C9C 
_cell.length_a            93.88 
_cell.length_b            93.88 
_cell.length_c            165.55 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H29 F N6 O' 
_chem_comp.formula_weight    424.514 
_chem_comp.id                4Z5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(3,3-dimethylbutyl)-3-{2-fluoro-4-methyl-5-[7-methyl-2-(methylamino)pyrido[2,3-d]pyrimidin-6-yl]phenyl}urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LY3009120 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C27 4Z5 sing 1 n n 
C30 C27 4Z5 sing 2 n n 
C27 C31 4Z5 sing 3 n n 
C27 C26 4Z5 sing 4 n n 
C26 C25 4Z5 sing 5 n n 
C25 N24 4Z5 sing 6 n n 
N24 C23 4Z5 sing 7 n n 
O29 C23 4Z5 doub 8 n n 
C23 N22 4Z5 sing 9 n n 
N22 C16 4Z5 sing 10 n n 
C16 C15 4Z5 doub 11 n y 
C16 C17 4Z5 sing 12 n y 
C15 C12 4Z5 sing 13 n y 
F20 C17 4Z5 sing 14 n n 
C17 C18 4Z5 doub 15 n y 
C12 C8 4Z5 sing 16 n n 
C12 C19 4Z5 doub 17 n y 
C11 C9 4Z5 sing 18 n n 
C8 C9 4Z5 doub 19 n y 
C8 C7 4Z5 sing 20 n y 
C9 N10 4Z5 sing 21 n y 
C7 C6 4Z5 doub 22 n y 
N10 C5 4Z5 doub 23 n y 
C6 C5 4Z5 sing 24 n y 
C6 C1 4Z5 sing 25 n y 
C5 N4 4Z5 sing 26 n y 
C18 C19 4Z5 sing 27 n y 
C1 N2 4Z5 doub 28 n y 
N4 C3 4Z5 doub 29 n y 
C19 C21 4Z5 sing 30 n n 
N2 C3 4Z5 sing 31 n y 
C3 N13 4Z5 sing 32 n n 
N13 C14 4Z5 sing 33 n n 
N24 H1 4Z5 sing 34 n n 
C25 H2 4Z5 sing 35 n n 
C25 H3 4Z5 sing 36 n n 
C26 H4 4Z5 sing 37 n n 
C26 H5 4Z5 sing 38 n n 
C31 H6 4Z5 sing 39 n n 
C31 H7 4Z5 sing 40 n n 
C31 H8 4Z5 sing 41 n n 
C30 H9 4Z5 sing 42 n n 
C30 H10 4Z5 sing 43 n n 
C30 H11 4Z5 sing 44 n n 
C28 H12 4Z5 sing 45 n n 
C28 H13 4Z5 sing 46 n n 
C28 H14 4Z5 sing 47 n n 
N22 H15 4Z5 sing 48 n n 
C15 H16 4Z5 sing 49 n n 
C18 H17 4Z5 sing 50 n n 
C21 H18 4Z5 sing 51 n n 
C21 H19 4Z5 sing 52 n n 
C21 H20 4Z5 sing 53 n n 
C7 H21 4Z5 sing 54 n n 
C1 H22 4Z5 sing 55 n n 
C11 H23 4Z5 sing 56 n n 
C11 H24 4Z5 sing 57 n n 
C11 H25 4Z5 sing 58 n n 
N13 H26 4Z5 sing 59 n n 
C14 H27 4Z5 sing 60 n n 
C14 H28 4Z5 sing 61 n n 
C14 H29 4Z5 sing 62 n n 
#
_atom_sites.entry_id                     5C9C 
_atom_sites.fract_transf_matrix[1][1]    0.010652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00604 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4Z5 A 1 900 900 4Z5 978 . 
D 2 4Z5 B 1 801 900 4Z5 978 . 
E 3 CL B 1 802 1 CL CL . 
F 4 HOH A 1 1001 47 HOH HOH . 
F 4 HOH A 2 1002 23 HOH HOH . 
F 4 HOH A 3 1003 95 HOH HOH . 
F 4 HOH A 4 1004 122 HOH HOH . 
F 4 HOH A 5 1005 13 HOH HOH . 
F 4 HOH A 6 1006 98 HOH HOH . 
F 4 HOH A 7 1007 101 HOH HOH . 
F 4 HOH A 8 1008 14 HOH HOH . 
F 4 HOH A 9 1009 126 HOH HOH . 
F 4 HOH A 10 1010 32 HOH HOH . 
F 4 HOH A 11 1011 19 HOH HOH . 
F 4 HOH A 12 1012 102 HOH HOH . 
F 4 HOH A 13 1013 29 HOH HOH . 
F 4 HOH A 14 1014 28 HOH HOH . 
F 4 HOH A 15 1015 40 HOH HOH . 
F 4 HOH A 16 1016 30 HOH HOH . 
F 4 HOH A 17 1017 2 HOH HOH . 
F 4 HOH A 18 1018 8 HOH HOH . 
F 4 HOH A 19 1019 60 HOH HOH . 
F 4 HOH A 20 1020 52 HOH HOH . 
F 4 HOH A 21 1021 51 HOH HOH . 
F 4 HOH A 22 1022 50 HOH HOH . 
F 4 HOH A 23 1023 49 HOH HOH . 
F 4 HOH A 24 1024 56 HOH HOH . 
F 4 HOH A 25 1025 46 HOH HOH . 
F 4 HOH A 26 1026 43 HOH HOH . 
F 4 HOH A 27 1027 31 HOH HOH . 
F 4 HOH A 28 1028 105 HOH HOH . 
F 4 HOH A 29 1029 9 HOH HOH . 
F 4 HOH A 30 1030 11 HOH HOH . 
F 4 HOH A 31 1031 132 HOH HOH . 
F 4 HOH A 32 1032 4 HOH HOH . 
F 4 HOH A 33 1033 131 HOH HOH . 
F 4 HOH A 34 1034 108 HOH HOH . 
F 4 HOH A 35 1035 133 HOH HOH . 
F 4 HOH A 36 1036 27 HOH HOH . 
F 4 HOH A 37 1037 24 HOH HOH . 
F 4 HOH A 38 1038 96 HOH HOH . 
F 4 HOH A 39 1039 18 HOH HOH . 
F 4 HOH A 40 1040 21 HOH HOH . 
F 4 HOH A 41 1041 104 HOH HOH . 
F 4 HOH A 42 1042 58 HOH HOH . 
F 4 HOH A 43 1043 53 HOH HOH . 
F 4 HOH A 44 1044 15 HOH HOH . 
F 4 HOH A 45 1045 1 HOH HOH . 
F 4 HOH A 46 1046 41 HOH HOH . 
F 4 HOH A 47 1047 7 HOH HOH . 
F 4 HOH A 48 1048 26 HOH HOH . 
F 4 HOH A 49 1049 54 HOH HOH . 
F 4 HOH A 50 1050 36 HOH HOH . 
F 4 HOH A 51 1051 16 HOH HOH . 
F 4 HOH A 52 1052 64 HOH HOH . 
F 4 HOH A 53 1053 57 HOH HOH . 
F 4 HOH A 54 1054 103 HOH HOH . 
F 4 HOH A 55 1055 34 HOH HOH . 
F 4 HOH A 56 1056 38 HOH HOH . 
F 4 HOH A 57 1057 107 HOH HOH . 
F 4 HOH A 58 1058 106 HOH HOH . 
F 4 HOH A 59 1059 59 HOH HOH . 
F 4 HOH A 60 1060 125 HOH HOH . 
F 4 HOH A 61 1061 97 HOH HOH . 
F 4 HOH A 62 1062 20 HOH HOH . 
F 4 HOH A 63 1063 37 HOH HOH . 
F 4 HOH A 64 1064 22 HOH HOH . 
F 4 HOH A 65 1065 3 HOH HOH . 
F 4 HOH A 66 1066 48 HOH HOH . 
F 4 HOH A 67 1067 124 HOH HOH . 
F 4 HOH A 68 1068 25 HOH HOH . 
F 4 HOH A 69 1069 81 HOH HOH . 
F 4 HOH A 70 1070 61 HOH HOH . 
F 4 HOH A 71 1071 39 HOH HOH . 
F 4 HOH A 72 1072 63 HOH HOH . 
F 4 HOH A 73 1073 35 HOH HOH . 
F 4 HOH A 74 1074 45 HOH HOH . 
F 4 HOH A 75 1075 44 HOH HOH . 
F 4 HOH A 76 1076 12 HOH HOH . 
F 4 HOH A 77 1077 42 HOH HOH . 
F 4 HOH A 78 1078 123 HOH HOH . 
F 4 HOH A 79 1079 65 HOH HOH . 
F 4 HOH A 80 1080 130 HOH HOH . 
G 4 HOH B 1 901 99 HOH HOH . 
G 4 HOH B 2 902 5 HOH HOH . 
G 4 HOH B 3 903 68 HOH HOH . 
G 4 HOH B 4 904 135 HOH HOH . 
G 4 HOH B 5 905 73 HOH HOH . 
G 4 HOH B 6 906 55 HOH HOH . 
G 4 HOH B 7 907 74 HOH HOH . 
G 4 HOH B 8 908 117 HOH HOH . 
G 4 HOH B 9 909 76 HOH HOH . 
G 4 HOH B 10 910 134 HOH HOH . 
G 4 HOH B 11 911 75 HOH HOH . 
G 4 HOH B 12 912 67 HOH HOH . 
G 4 HOH B 13 913 91 HOH HOH . 
G 4 HOH B 14 914 70 HOH HOH . 
G 4 HOH B 15 915 119 HOH HOH . 
G 4 HOH B 16 916 79 HOH HOH . 
G 4 HOH B 17 917 109 HOH HOH . 
G 4 HOH B 18 918 72 HOH HOH . 
G 4 HOH B 19 919 115 HOH HOH . 
G 4 HOH B 20 920 66 HOH HOH . 
G 4 HOH B 21 921 85 HOH HOH . 
G 4 HOH B 22 922 127 HOH HOH . 
G 4 HOH B 23 923 78 HOH HOH . 
G 4 HOH B 24 924 62 HOH HOH . 
G 4 HOH B 25 925 92 HOH HOH . 
G 4 HOH B 26 926 83 HOH HOH . 
G 4 HOH B 27 927 80 HOH HOH . 
G 4 HOH B 28 928 111 HOH HOH . 
G 4 HOH B 29 929 17 HOH HOH . 
G 4 HOH B 30 930 112 HOH HOH . 
G 4 HOH B 31 931 82 HOH HOH . 
G 4 HOH B 32 932 113 HOH HOH . 
G 4 HOH B 33 933 87 HOH HOH . 
G 4 HOH B 34 934 93 HOH HOH . 
G 4 HOH B 35 935 84 HOH HOH . 
G 4 HOH B 36 936 69 HOH HOH . 
G 4 HOH B 37 937 86 HOH HOH . 
G 4 HOH B 38 938 94 HOH HOH . 
G 4 HOH B 39 939 116 HOH HOH . 
G 4 HOH B 40 940 89 HOH HOH . 
G 4 HOH B 41 941 71 HOH HOH . 
G 4 HOH B 42 942 118 HOH HOH . 
G 4 HOH B 43 943 88 HOH HOH . 
G 4 HOH B 44 944 77 HOH HOH . 
G 4 HOH B 45 945 33 HOH HOH . 
G 4 HOH B 46 946 90 HOH HOH . 
G 4 HOH B 47 947 6 HOH HOH . 
G 4 HOH B 48 948 100 HOH HOH . 
G 4 HOH B 49 949 10 HOH HOH . 
G 4 HOH B 50 950 110 HOH HOH . 
G 4 HOH B 51 951 120 HOH HOH . 
G 4 HOH B 52 952 128 HOH HOH . 
G 4 HOH B 53 953 114 HOH HOH . 
G 4 HOH B 54 954 121 HOH HOH . 
G 4 HOH B 55 955 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O29 4Z5 . . . C 2 -4.016 25.446 6.025 1 10.74 ? O29 4Z5 900 A 1 
HETATM 2 C C23 4Z5 . . . C 2 -2.838 25.785 6.193 1 11.97 ? C23 4Z5 900 A 1 
HETATM 3 N N24 4Z5 . . . C 2 -2.006 26.134 5.194 1 11.86 ? N24 4Z5 900 A 1 
HETATM 4 C C25 4Z5 . . . C 2 -2.332 26.187 3.763 1 13.96 ? C25 4Z5 900 A 1 
HETATM 5 C C26 4Z5 . . . C 2 -2.994 27.518 3.395 1 15.72 ? C26 4Z5 900 A 1 
HETATM 6 C C27 4Z5 . . . C 2 -3.196 27.871 1.929 1 15.83 ? C27 4Z5 900 A 1 
HETATM 7 C C31 4Z5 . . . C 2 -3.701 29.294 1.948 1 15.48 ? C31 4Z5 900 A 1 
HETATM 8 C C30 4Z5 . . . C 2 -4.309 27.043 1.314 1 16.85 ? C30 4Z5 900 A 1 
HETATM 9 C C28 4Z5 . . . C 2 -1.924 27.737 1.093 1 14.35 ? C28 4Z5 900 A 1 
HETATM 10 N N22 4Z5 . . . C 2 -2.276 25.807 7.407 1 12.83 ? N22 4Z5 900 A 1 
HETATM 11 C C16 4Z5 . . . C 2 -2.89 25.558 8.591 1 11.65 ? C16 4Z5 900 A 1 
HETATM 12 C C15 4Z5 . . . C 2 -3.846 24.567 8.772 1 10.88 ? C15 4Z5 900 A 1 
HETATM 13 C C17 4Z5 . . . C 2 -2.494 26.319 9.662 1 12.48 ? C17 4Z5 900 A 1 
HETATM 14 F F20 4Z5 . . . C 2 -1.538 27.232 9.473 1 15.56 ? F20 4Z5 900 A 1 
HETATM 15 C C18 4Z5 . . . C 2 -3.051 26.153 10.925 1 12.51 ? C18 4Z5 900 A 1 
HETATM 16 C C19 4Z5 . . . C 2 -4.031 25.187 11.125 1 11.69 ? C19 4Z5 900 A 1 
HETATM 17 C C21 4Z5 . . . C 2 -4.605 25.057 12.517 1 6.82 ? C21 4Z5 900 A 1 
HETATM 18 C C12 4Z5 . . . C 2 -4.43 24.392 10.034 1 11.26 ? C12 4Z5 900 A 1 
HETATM 19 C C8 4Z5 . . . C 2 -5.466 23.358 10.297 1 10.66 ? C8 4Z5 900 A 1 
HETATM 20 C C7 4Z5 . . . C 2 -6.8 23.718 10.476 1 10.84 ? C7 4Z5 900 A 1 
HETATM 21 C C6 4Z5 . . . C 2 -7.732 22.709 10.744 1 11.5 ? C6 4Z5 900 A 1 
HETATM 22 C C1 4Z5 . . . C 2 -9.073 23.003 10.945 1 11.07 ? C1 4Z5 900 A 1 
HETATM 23 C C9 4Z5 . . . C 2 -5.081 22.008 10.389 1 11.68 ? C9 4Z5 900 A 1 
HETATM 24 C C11 4Z5 . . . C 2 -3.631 21.585 10.188 1 10.43 ? C11 4Z5 900 A 1 
HETATM 25 N N10 4Z5 . . . C 2 -6.014 21.046 10.643 1 10.66 ? N10 4Z5 900 A 1 
HETATM 26 C C5 4Z5 . . . C 2 -7.311 21.387 10.83 1 11.25 ? C5 4Z5 900 A 1 
HETATM 27 N N4 4Z5 . . . C 2 -8.214 20.434 11.111 1 13.06 ? N4 4Z5 900 A 1 
HETATM 28 C C3 4Z5 . . . C 2 -9.518 20.735 11.31 1 13.79 ? C3 4Z5 900 A 1 
HETATM 29 N N2 4Z5 . . . C 2 -9.935 22.023 11.232 1 12.41 ? N2 4Z5 900 A 1 
HETATM 30 N N13 4Z5 . . . C 2 -10.399 19.738 11.58 1 14.5 ? N13 4Z5 900 A 1 
HETATM 31 C C14 4Z5 . . . C 2 -9.952 18.36 11.692 1 14.23 ? C14 4Z5 900 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#