data_5C9J
#
_model_server_result.job_id            fEaj2heVrjXIJogTuEFjIg 
_model_server_result.datetime_utc      '2024-11-24 19:10:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":101}' 
#
_entry.id    5C9J 
#
_exptl.entry_id    5C9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5C9J 
_cell.length_a            97.13 
_cell.length_b            97.13 
_cell.length_c            115.08 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 97 A CYS 105 1_555 A SG CYS 162 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
disulf ? disulf2 A SG CYS 202 A CYS 210 1_555 A SG CYS 257 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 166 n n 
C1 C2 GOL sing 167 n n 
C1 H11 GOL sing 168 n n 
C1 H12 GOL sing 169 n n 
O1 HO1 GOL sing 170 n n 
C2 O2 GOL sing 171 n n 
C2 C3 GOL sing 172 n n 
C2 H2 GOL sing 173 n n 
O2 HO2 GOL sing 174 n n 
C3 O3 GOL sing 175 n n 
C3 H31 GOL sing 176 n n 
C3 H32 GOL sing 177 n n 
O3 HO3 GOL sing 178 n n 
#
_atom_sites.entry_id                     5C9J 
_atom_sites.fract_transf_matrix[1][1]    0.010295 
_atom_sites.fract_transf_matrix[1][2]    0.005944 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011888 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DAO A 1 301 1 DAO LAU . 
D 3 DAO A 1 302 2 DAO LAU . 
E 4 STE A 1 303 3 STE STE . 
F 5 GOL A 1 304 1 GOL GOL . 
G 5 GOL A 1 305 3 GOL GOL . 
H 5 GOL A 1 306 4 GOL GOL . 
I 6 PO4 A 1 307 11 PO4 PO4 . 
J 6 PO4 A 1 308 12 PO4 PO4 . 
K 5 GOL B 1 101 2 GOL GOL . 
L 7 HOH A 1 401 30 HOH HOH . 
L 7 HOH A 2 402 70 HOH HOH . 
L 7 HOH A 3 403 76 HOH HOH . 
L 7 HOH A 4 404 114 HOH HOH . 
L 7 HOH A 5 405 67 HOH HOH . 
L 7 HOH A 6 406 84 HOH HOH . 
L 7 HOH A 7 407 73 HOH HOH . 
L 7 HOH A 8 408 5 HOH HOH . 
L 7 HOH A 9 409 19 HOH HOH . 
L 7 HOH A 10 410 79 HOH HOH . 
L 7 HOH A 11 411 12 HOH HOH . 
L 7 HOH A 12 412 107 HOH HOH . 
L 7 HOH A 13 413 94 HOH HOH . 
L 7 HOH A 14 414 115 HOH HOH . 
L 7 HOH A 15 415 111 HOH HOH . 
L 7 HOH A 16 416 74 HOH HOH . 
L 7 HOH A 17 417 78 HOH HOH . 
L 7 HOH A 18 418 93 HOH HOH . 
L 7 HOH A 19 419 89 HOH HOH . 
L 7 HOH A 20 420 112 HOH HOH . 
L 7 HOH A 21 421 44 HOH HOH . 
L 7 HOH A 22 422 83 HOH HOH . 
L 7 HOH A 23 423 14 HOH HOH . 
L 7 HOH A 24 424 38 HOH HOH . 
L 7 HOH A 25 425 1 HOH HOH . 
L 7 HOH A 26 426 8 HOH HOH . 
L 7 HOH A 27 427 46 HOH HOH . 
L 7 HOH A 28 428 10 HOH HOH . 
L 7 HOH A 29 429 45 HOH HOH . 
L 7 HOH A 30 430 68 HOH HOH . 
L 7 HOH A 31 431 62 HOH HOH . 
L 7 HOH A 32 432 3 HOH HOH . 
L 7 HOH A 33 433 42 HOH HOH . 
L 7 HOH A 34 434 4 HOH HOH . 
L 7 HOH A 35 435 50 HOH HOH . 
L 7 HOH A 36 436 13 HOH HOH . 
L 7 HOH A 37 437 92 HOH HOH . 
L 7 HOH A 38 438 27 HOH HOH . 
L 7 HOH A 39 439 65 HOH HOH . 
L 7 HOH A 40 440 57 HOH HOH . 
L 7 HOH A 41 441 25 HOH HOH . 
L 7 HOH A 42 442 32 HOH HOH . 
L 7 HOH A 43 443 23 HOH HOH . 
L 7 HOH A 44 444 88 HOH HOH . 
L 7 HOH A 45 445 82 HOH HOH . 
L 7 HOH A 46 446 80 HOH HOH . 
L 7 HOH A 47 447 61 HOH HOH . 
L 7 HOH A 48 448 33 HOH HOH . 
L 7 HOH A 49 449 87 HOH HOH . 
L 7 HOH A 50 450 29 HOH HOH . 
L 7 HOH A 51 451 21 HOH HOH . 
L 7 HOH A 52 452 35 HOH HOH . 
L 7 HOH A 53 453 106 HOH HOH . 
L 7 HOH A 54 454 85 HOH HOH . 
L 7 HOH A 55 455 51 HOH HOH . 
L 7 HOH A 56 456 28 HOH HOH . 
L 7 HOH A 57 457 40 HOH HOH . 
L 7 HOH A 58 458 55 HOH HOH . 
L 7 HOH A 59 459 36 HOH HOH . 
L 7 HOH A 60 460 31 HOH HOH . 
L 7 HOH A 61 461 58 HOH HOH . 
L 7 HOH A 62 462 6 HOH HOH . 
L 7 HOH A 63 463 20 HOH HOH . 
L 7 HOH A 64 464 108 HOH HOH . 
L 7 HOH A 65 465 71 HOH HOH . 
L 7 HOH A 66 466 86 HOH HOH . 
L 7 HOH A 67 467 22 HOH HOH . 
L 7 HOH A 68 468 24 HOH HOH . 
L 7 HOH A 69 469 97 HOH HOH . 
L 7 HOH A 70 470 104 HOH HOH . 
L 7 HOH A 71 471 113 HOH HOH . 
L 7 HOH A 72 472 103 HOH HOH . 
L 7 HOH A 73 473 69 HOH HOH . 
L 7 HOH A 74 474 39 HOH HOH . 
L 7 HOH A 75 475 72 HOH HOH . 
L 7 HOH A 76 476 77 HOH HOH . 
L 7 HOH A 77 477 105 HOH HOH . 
M 7 HOH B 1 201 102 HOH HOH . 
M 7 HOH B 2 202 101 HOH HOH . 
M 7 HOH B 3 203 91 HOH HOH . 
M 7 HOH B 4 204 9 HOH HOH . 
M 7 HOH B 5 205 2 HOH HOH . 
M 7 HOH B 6 206 43 HOH HOH . 
M 7 HOH B 7 207 63 HOH HOH . 
M 7 HOH B 8 208 17 HOH HOH . 
M 7 HOH B 9 209 64 HOH HOH . 
M 7 HOH B 10 210 18 HOH HOH . 
M 7 HOH B 11 211 41 HOH HOH . 
M 7 HOH B 12 212 52 HOH HOH . 
M 7 HOH B 13 213 54 HOH HOH . 
M 7 HOH B 14 214 15 HOH HOH . 
M 7 HOH B 15 215 75 HOH HOH . 
M 7 HOH B 16 216 98 HOH HOH . 
M 7 HOH B 17 217 7 HOH HOH . 
M 7 HOH B 18 218 11 HOH HOH . 
M 7 HOH B 19 219 16 HOH HOH . 
M 7 HOH B 20 220 34 HOH HOH . 
M 7 HOH B 21 221 66 HOH HOH . 
M 7 HOH B 22 222 109 HOH HOH . 
M 7 HOH B 23 223 48 HOH HOH . 
M 7 HOH B 24 224 59 HOH HOH . 
M 7 HOH B 25 225 100 HOH HOH . 
M 7 HOH B 26 226 56 HOH HOH . 
M 7 HOH B 27 227 116 HOH HOH . 
M 7 HOH B 28 228 53 HOH HOH . 
M 7 HOH B 29 229 47 HOH HOH . 
M 7 HOH B 30 230 26 HOH HOH . 
M 7 HOH B 31 231 49 HOH HOH . 
M 7 HOH B 32 232 99 HOH HOH . 
M 7 HOH B 33 233 110 HOH HOH . 
M 7 HOH B 34 234 96 HOH HOH . 
M 7 HOH B 35 235 60 HOH HOH . 
M 7 HOH B 36 236 90 HOH HOH . 
M 7 HOH B 37 237 81 HOH HOH . 
M 7 HOH B 38 238 95 HOH HOH . 
M 7 HOH B 39 239 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 -9.677 -8.081 -1.025 1 50.33 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . K 5 -9.125 -9.309 -1.526 1 64.02 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . K 5 -9.268 -7.876 0.462 1 56.65 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . K 5 -10.477 -7.892 1.354 1 54.91 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . K 5 -8.536 -6.546 0.581 1 58.4 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . K 5 -7.757 -6.262 -0.653 1 67.34 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#