data_5CA0 # _model_server_result.job_id B0hIyff1jhxRP-FHdzoqRw _model_server_result.datetime_utc '2024-12-02 16:12:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ca0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 5CA0 # _exptl.entry_id 5CA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CA0 _cell.length_a 105.06 _cell.length_b 158.444 _cell.length_c 181.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 K N N ? 9 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 H MG MG . A MG 502 1_555 U O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 H MG MG . A MG 502 1_555 U O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc12 H MG MG . A MG 502 1_555 U O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc13 H MG MG . A MG 502 1_555 U O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 I CA CA . A CA 503 1_555 U O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc15 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc16 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc17 L MG MG . B MG 502 1_555 V O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc18 L MG MG . B MG 502 1_555 W O HOH . C HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc21 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc23 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc26 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc27 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc28 P MG MG . C MG 502 1_555 W O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc29 P MG MG . C MG 502 1_555 W O HOH . C HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc30 P MG MG . C MG 502 1_555 W O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc31 P MG MG . C MG 502 1_555 W O HOH . C HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc32 Q CA CA . C CA 503 1_555 W O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 134 n n PB O2B GDP sing 135 n n PB O3B GDP sing 136 n n PB O3A GDP sing 137 n n O2B HOB2 GDP sing 138 n n O3B HOB3 GDP sing 139 n n O3A PA GDP sing 140 n n PA O1A GDP doub 141 n n PA O2A GDP sing 142 n n PA O5' GDP sing 143 n n O2A HOA2 GDP sing 144 n n O5' C5' GDP sing 145 n n C5' C4' GDP sing 146 n n C5' H5' GDP sing 147 n n C5' "H5''" GDP sing 148 n n C4' O4' GDP sing 149 n n C4' C3' GDP sing 150 n n C4' H4' GDP sing 151 n n O4' C1' GDP sing 152 n n C3' O3' GDP sing 153 n n C3' C2' GDP sing 154 n n C3' H3' GDP sing 155 n n O3' HO3' GDP sing 156 n n C2' O2' GDP sing 157 n n C2' C1' GDP sing 158 n n C2' H2' GDP sing 159 n n O2' HO2' GDP sing 160 n n C1' N9 GDP sing 161 n n C1' H1' GDP sing 162 n n N9 C8 GDP sing 163 n y N9 C4 GDP sing 164 n y C8 N7 GDP doub 165 n y C8 H8 GDP sing 166 n n N7 C5 GDP sing 167 n y C5 C6 GDP sing 168 n n C5 C4 GDP doub 169 n y C6 O6 GDP doub 170 n n C6 N1 GDP sing 171 n n N1 C2 GDP sing 172 n n N1 HN1 GDP sing 173 n n C2 N2 GDP sing 174 n n C2 N3 GDP doub 175 n n N2 HN21 GDP sing 176 n n N2 HN22 GDP sing 177 n n N3 C4 GDP sing 178 n n # _atom_sites.entry_id 5CA0 _atom_sites.fract_transf_matrix[1][1] 0.009518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GOL A 1 504 601 GOL GOL . K 9 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 10 MES B 1 503 505 MES MES . N 11 LXL B 1 504 1 LXL LEX . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 504 CA CA . R 9 GDP D 1 501 501 GDP GDP . S 11 LXL D 1 502 2 LXL LEX . T 12 ACP F 1 401 401 ACP ACP . U 13 HOH A 1 601 1012 HOH HOH . U 13 HOH A 2 602 1139 HOH HOH . U 13 HOH A 3 603 1136 HOH HOH . U 13 HOH A 4 604 1018 HOH HOH . U 13 HOH A 5 605 1146 HOH HOH . U 13 HOH A 6 606 1016 HOH HOH . U 13 HOH A 7 607 1017 HOH HOH . U 13 HOH A 8 608 1005 HOH HOH . U 13 HOH A 9 609 1112 HOH HOH . U 13 HOH A 10 610 1034 HOH HOH . U 13 HOH A 11 611 1054 HOH HOH . U 13 HOH A 12 612 1038 HOH HOH . U 13 HOH A 13 613 1142 HOH HOH . U 13 HOH A 14 614 1010 HOH HOH . U 13 HOH A 15 615 1118 HOH HOH . U 13 HOH A 16 616 1128 HOH HOH . U 13 HOH A 17 617 1076 HOH HOH . U 13 HOH A 18 618 1062 HOH HOH . U 13 HOH A 19 619 1081 HOH HOH . U 13 HOH A 20 620 1093 HOH HOH . U 13 HOH A 21 621 1119 HOH HOH . U 13 HOH A 22 622 1068 HOH HOH . U 13 HOH A 23 623 1051 HOH HOH . U 13 HOH A 24 624 1100 HOH HOH . U 13 HOH A 25 625 1096 HOH HOH . U 13 HOH A 26 626 1094 HOH HOH . U 13 HOH A 27 627 1162 HOH HOH . U 13 HOH A 28 628 1138 HOH HOH . U 13 HOH A 29 629 1169 HOH HOH . U 13 HOH A 30 630 1009 HOH HOH . U 13 HOH A 31 631 1159 HOH HOH . U 13 HOH A 32 632 1122 HOH HOH . U 13 HOH A 33 633 1129 HOH HOH . U 13 HOH A 34 634 1099 HOH HOH . V 13 HOH B 1 601 1111 HOH HOH . V 13 HOH B 2 602 1066 HOH HOH . V 13 HOH B 3 603 1121 HOH HOH . V 13 HOH B 4 604 1069 HOH HOH . V 13 HOH B 5 605 1007 HOH HOH . V 13 HOH B 6 606 1114 HOH HOH . V 13 HOH B 7 607 1055 HOH HOH . V 13 HOH B 8 608 1101 HOH HOH . V 13 HOH B 9 609 1026 HOH HOH . V 13 HOH B 10 610 1061 HOH HOH . V 13 HOH B 11 611 1006 HOH HOH . V 13 HOH B 12 612 1143 HOH HOH . V 13 HOH B 13 613 1095 HOH HOH . V 13 HOH B 14 614 1030 HOH HOH . V 13 HOH B 15 615 1060 HOH HOH . V 13 HOH B 16 616 1166 HOH HOH . V 13 HOH B 17 617 1041 HOH HOH . V 13 HOH B 18 618 1002 HOH HOH . V 13 HOH B 19 619 1004 HOH HOH . V 13 HOH B 20 620 1167 HOH HOH . V 13 HOH B 21 621 1153 HOH HOH . V 13 HOH B 22 622 1058 HOH HOH . V 13 HOH B 23 623 1008 HOH HOH . V 13 HOH B 24 624 1107 HOH HOH . V 13 HOH B 25 625 1089 HOH HOH . V 13 HOH B 26 626 1130 HOH HOH . V 13 HOH B 27 627 1075 HOH HOH . V 13 HOH B 28 628 1028 HOH HOH . V 13 HOH B 29 629 1037 HOH HOH . W 13 HOH C 1 601 1152 HOH HOH . W 13 HOH C 2 602 1149 HOH HOH . W 13 HOH C 3 603 1048 HOH HOH . W 13 HOH C 4 604 1087 HOH HOH . W 13 HOH C 5 605 1104 HOH HOH . W 13 HOH C 6 606 1045 HOH HOH . W 13 HOH C 7 607 1013 HOH HOH . W 13 HOH C 8 608 1117 HOH HOH . W 13 HOH C 9 609 1025 HOH HOH . W 13 HOH C 10 610 1155 HOH HOH . W 13 HOH C 11 611 1108 HOH HOH . W 13 HOH C 12 612 1106 HOH HOH . W 13 HOH C 13 613 1140 HOH HOH . W 13 HOH C 14 614 1113 HOH HOH . W 13 HOH C 15 615 1109 HOH HOH . W 13 HOH C 16 616 1064 HOH HOH . W 13 HOH C 17 617 1011 HOH HOH . W 13 HOH C 18 618 1102 HOH HOH . W 13 HOH C 19 619 1056 HOH HOH . W 13 HOH C 20 620 1046 HOH HOH . W 13 HOH C 21 621 1040 HOH HOH . W 13 HOH C 22 622 1115 HOH HOH . W 13 HOH C 23 623 1019 HOH HOH . W 13 HOH C 24 624 1021 HOH HOH . W 13 HOH C 25 625 1047 HOH HOH . W 13 HOH C 26 626 1015 HOH HOH . W 13 HOH C 27 627 1092 HOH HOH . W 13 HOH C 28 628 1003 HOH HOH . W 13 HOH C 29 629 1049 HOH HOH . W 13 HOH C 30 630 1125 HOH HOH . W 13 HOH C 31 631 1044 HOH HOH . W 13 HOH C 32 632 1124 HOH HOH . W 13 HOH C 33 633 1078 HOH HOH . W 13 HOH C 34 634 1059 HOH HOH . W 13 HOH C 35 635 1029 HOH HOH . W 13 HOH C 36 636 1134 HOH HOH . W 13 HOH C 37 637 1148 HOH HOH . W 13 HOH C 38 638 1097 HOH HOH . W 13 HOH C 39 639 1074 HOH HOH . W 13 HOH C 40 640 1053 HOH HOH . W 13 HOH C 41 641 1027 HOH HOH . W 13 HOH C 42 642 1057 HOH HOH . W 13 HOH C 43 643 1156 HOH HOH . W 13 HOH C 44 644 1091 HOH HOH . W 13 HOH C 45 645 1086 HOH HOH . W 13 HOH C 46 646 1157 HOH HOH . W 13 HOH C 47 647 1126 HOH HOH . W 13 HOH C 48 648 1110 HOH HOH . W 13 HOH C 49 649 1147 HOH HOH . W 13 HOH C 50 650 1042 HOH HOH . W 13 HOH C 51 651 1001 HOH HOH . W 13 HOH C 52 652 1083 HOH HOH . W 13 HOH C 53 653 1065 HOH HOH . W 13 HOH C 54 654 1088 HOH HOH . W 13 HOH C 55 655 1084 HOH HOH . W 13 HOH C 56 656 1131 HOH HOH . W 13 HOH C 57 657 1161 HOH HOH . W 13 HOH C 58 658 1035 HOH HOH . W 13 HOH C 59 659 1137 HOH HOH . W 13 HOH C 60 660 1063 HOH HOH . W 13 HOH C 61 661 1080 HOH HOH . W 13 HOH C 62 662 1150 HOH HOH . W 13 HOH C 63 663 1024 HOH HOH . W 13 HOH C 64 664 1036 HOH HOH . W 13 HOH C 65 665 1103 HOH HOH . W 13 HOH C 66 666 1082 HOH HOH . W 13 HOH C 67 667 1072 HOH HOH . W 13 HOH C 68 668 1163 HOH HOH . W 13 HOH C 69 669 1154 HOH HOH . W 13 HOH C 70 670 1164 HOH HOH . X 13 HOH D 1 601 1052 HOH HOH . X 13 HOH D 2 602 1033 HOH HOH . X 13 HOH D 3 603 1067 HOH HOH . X 13 HOH D 4 604 1160 HOH HOH . X 13 HOH D 5 605 1123 HOH HOH . X 13 HOH D 6 606 1133 HOH HOH . X 13 HOH D 7 607 1144 HOH HOH . X 13 HOH D 8 608 1050 HOH HOH . X 13 HOH D 9 609 1085 HOH HOH . X 13 HOH D 10 610 1145 HOH HOH . X 13 HOH D 11 611 1141 HOH HOH . X 13 HOH D 12 612 1165 HOH HOH . X 13 HOH D 13 613 1127 HOH HOH . X 13 HOH D 14 614 1158 HOH HOH . X 13 HOH D 15 615 1071 HOH HOH . X 13 HOH D 16 616 1172 HOH HOH . X 13 HOH D 17 617 1120 HOH HOH . Y 13 HOH E 1 201 1070 HOH HOH . Y 13 HOH E 2 202 1132 HOH HOH . Y 13 HOH E 3 203 1077 HOH HOH . Y 13 HOH E 4 204 1105 HOH HOH . Y 13 HOH E 5 205 1168 HOH HOH . Y 13 HOH E 6 206 1039 HOH HOH . Y 13 HOH E 7 207 1135 HOH HOH . Z 13 HOH F 1 501 1022 HOH HOH . Z 13 HOH F 2 502 1023 HOH HOH . Z 13 HOH F 3 503 1073 HOH HOH . Z 13 HOH F 4 504 1031 HOH HOH . Z 13 HOH F 5 505 1014 HOH HOH . Z 13 HOH F 6 506 1043 HOH HOH . Z 13 HOH F 7 507 1170 HOH HOH . Z 13 HOH F 8 508 1032 HOH HOH . Z 13 HOH F 9 509 1090 HOH HOH . Z 13 HOH F 10 510 1098 HOH HOH . Z 13 HOH F 11 511 1116 HOH HOH . Z 13 HOH F 12 512 1020 HOH HOH . Z 13 HOH F 13 513 1151 HOH HOH . Z 13 HOH F 14 514 1079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . K 9 18.566 208.37 15.837 1 58.6 ? PB GDP 501 B 1 HETATM 2 O O1B GDP . . . K 9 17.738 209.226 14.909 1 64.26 ? O1B GDP 501 B 1 HETATM 3 O O2B GDP . . . K 9 19.685 209.18 16.436 1 58.74 ? O2B GDP 501 B 1 HETATM 4 O O3B GDP . . . K 9 19.157 207.21 15.073 1 59.92 ? O3B GDP 501 B 1 HETATM 5 O O3A GDP . . . K 9 17.662 207.837 17.053 1 64.53 ? O3A GDP 501 B 1 HETATM 6 P PA GDP . . . K 9 16.087 207.557 16.908 1 52.08 ? PA GDP 501 B 1 HETATM 7 O O1A GDP . . . K 9 15.757 206.914 15.582 1 90.37 ? O1A GDP 501 B 1 HETATM 8 O O2A GDP . . . K 9 15.317 208.84 17.1 1 53.74 ? O2A GDP 501 B 1 HETATM 9 O O5' GDP . . . K 9 15.822 206.554 18.139 1 50.58 ? O5' GDP 501 B 1 HETATM 10 C C5' GDP . . . K 9 14.651 205.747 18.226 1 48.28 ? C5' GDP 501 B 1 HETATM 11 C C4' GDP . . . K 9 14.128 205.891 19.647 1 60.31 ? C4' GDP 501 B 1 HETATM 12 O O4' GDP . . . K 9 13.898 207.283 19.863 1 51.57 ? O4' GDP 501 B 1 HETATM 13 C C3' GDP . . . K 9 12.819 205.155 19.886 1 50.49 ? C3' GDP 501 B 1 HETATM 14 O O3' GDP . . . K 9 12.908 204.353 21.069 1 62.35 ? O3' GDP 501 B 1 HETATM 15 C C2' GDP . . . K 9 11.763 206.234 20.037 1 49.79 ? C2' GDP 501 B 1 HETATM 16 O O2' GDP . . . K 9 10.96 206.027 21.201 1 97.77 ? O2' GDP 501 B 1 HETATM 17 C C1' GDP . . . K 9 12.526 207.542 20.16 1 49.55 ? C1' GDP 501 B 1 HETATM 18 N N9 GDP . . . K 9 11.992 208.549 19.213 1 45.76 ? N9 GDP 501 B 1 HETATM 19 C C8 GDP . . . K 9 12.3 208.642 17.906 1 53.45 ? C8 GDP 501 B 1 HETATM 20 N N7 GDP . . . K 9 11.64 209.681 17.333 1 53.94 ? N7 GDP 501 B 1 HETATM 21 C C5 GDP . . . K 9 10.895 210.266 18.289 1 63.33 ? C5 GDP 501 B 1 HETATM 22 C C6 GDP . . . K 9 9.961 211.411 18.365 1 53.72 ? C6 GDP 501 B 1 HETATM 23 O O6 GDP . . . K 9 9.705 212.1 17.357 1 73.29 ? O6 GDP 501 B 1 HETATM 24 N N1 GDP . . . K 9 9.396 211.688 19.543 1 67.36 ? N1 GDP 501 B 1 HETATM 25 C C2 GDP . . . K 9 9.651 210.963 20.65 1 55.44 ? C2 GDP 501 B 1 HETATM 26 N N2 GDP . . . K 9 9.04 211.305 21.811 1 49.36 ? N2 GDP 501 B 1 HETATM 27 N N3 GDP . . . K 9 10.496 209.902 20.656 1 51.88 ? N3 GDP 501 B 1 HETATM 28 C C4 GDP . . . K 9 11.132 209.516 19.527 1 53.42 ? C4 GDP 501 B 1 HETATM 29 H H4' GDP . . . K 9 14.886 205.517 20.35 1 72.37 ? H4' GDP 501 B 1 HETATM 30 H H3' GDP . . . K 9 12.584 204.533 19.011 1 60.59 ? H3' GDP 501 B 1 HETATM 31 H HO3' GDP . . . K 9 12.082 203.865 21.19 1 74.82 ? HO3' GDP 501 B 1 HETATM 32 H H2' GDP . . . K 9 11.137 206.261 19.134 1 59.75 ? H2' GDP 501 B 1 HETATM 33 H HO2' GDP . . . K 9 10.525 205.165 21.143 1 117.33 ? HO2' GDP 501 B 1 HETATM 34 H H1' GDP . . . K 9 12.43 207.911 21.191 1 59.46 ? H1' GDP 501 B 1 HETATM 35 H H8 GDP . . . K 9 12.981 207.981 17.384 1 64.14 ? H8 GDP 501 B 1 HETATM 36 H HN1 GDP . . . K 9 8.737 212.49 19.609 1 80.83 ? HN1 GDP 501 B 1 HETATM 37 H HN21 GDP . . . K 9 8.406 212.091 21.836 1 59.23 ? HN21 GDP 501 B 1 HETATM 38 H HN22 GDP . . . K 9 9.219 210.773 22.651 1 59.23 ? HN22 GDP 501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 38 #