data_5CA0 # _model_server_result.job_id Gw5YqnzTVFtSCDL4qu8l5Q _model_server_result.datetime_utc '2024-12-02 16:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ca0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":502}' # _entry.id 5CA0 # _exptl.entry_id 5CA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CA0 _cell.length_a 105.06 _cell.length_b 158.444 _cell.length_c 181.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 H MG MG . A MG 502 1_555 U O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 H MG MG . A MG 502 1_555 U O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc12 H MG MG . A MG 502 1_555 U O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc13 H MG MG . A MG 502 1_555 U O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 I CA CA . A CA 503 1_555 U O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc15 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc16 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc17 L MG MG . B MG 502 1_555 V O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc18 L MG MG . B MG 502 1_555 W O HOH . C HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc21 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc23 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc26 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc27 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc28 P MG MG . C MG 502 1_555 W O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc29 P MG MG . C MG 502 1_555 W O HOH . C HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc30 P MG MG . C MG 502 1_555 W O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc31 P MG MG . C MG 502 1_555 W O HOH . C HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc32 Q CA CA . C CA 503 1_555 W O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CA0 _atom_sites.fract_transf_matrix[1][1] 0.009518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GOL A 1 504 601 GOL GOL . K 9 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 10 MES B 1 503 505 MES MES . N 11 LXL B 1 504 1 LXL LEX . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 504 CA CA . R 9 GDP D 1 501 501 GDP GDP . S 11 LXL D 1 502 2 LXL LEX . T 12 ACP F 1 401 401 ACP ACP . U 13 HOH A 1 601 1012 HOH HOH . U 13 HOH A 2 602 1139 HOH HOH . U 13 HOH A 3 603 1136 HOH HOH . U 13 HOH A 4 604 1018 HOH HOH . U 13 HOH A 5 605 1146 HOH HOH . U 13 HOH A 6 606 1016 HOH HOH . U 13 HOH A 7 607 1017 HOH HOH . U 13 HOH A 8 608 1005 HOH HOH . U 13 HOH A 9 609 1112 HOH HOH . U 13 HOH A 10 610 1034 HOH HOH . U 13 HOH A 11 611 1054 HOH HOH . U 13 HOH A 12 612 1038 HOH HOH . U 13 HOH A 13 613 1142 HOH HOH . U 13 HOH A 14 614 1010 HOH HOH . U 13 HOH A 15 615 1118 HOH HOH . U 13 HOH A 16 616 1128 HOH HOH . U 13 HOH A 17 617 1076 HOH HOH . U 13 HOH A 18 618 1062 HOH HOH . U 13 HOH A 19 619 1081 HOH HOH . U 13 HOH A 20 620 1093 HOH HOH . U 13 HOH A 21 621 1119 HOH HOH . U 13 HOH A 22 622 1068 HOH HOH . U 13 HOH A 23 623 1051 HOH HOH . U 13 HOH A 24 624 1100 HOH HOH . U 13 HOH A 25 625 1096 HOH HOH . U 13 HOH A 26 626 1094 HOH HOH . U 13 HOH A 27 627 1162 HOH HOH . U 13 HOH A 28 628 1138 HOH HOH . U 13 HOH A 29 629 1169 HOH HOH . U 13 HOH A 30 630 1009 HOH HOH . U 13 HOH A 31 631 1159 HOH HOH . U 13 HOH A 32 632 1122 HOH HOH . U 13 HOH A 33 633 1129 HOH HOH . U 13 HOH A 34 634 1099 HOH HOH . V 13 HOH B 1 601 1111 HOH HOH . V 13 HOH B 2 602 1066 HOH HOH . V 13 HOH B 3 603 1121 HOH HOH . V 13 HOH B 4 604 1069 HOH HOH . V 13 HOH B 5 605 1007 HOH HOH . V 13 HOH B 6 606 1114 HOH HOH . V 13 HOH B 7 607 1055 HOH HOH . V 13 HOH B 8 608 1101 HOH HOH . V 13 HOH B 9 609 1026 HOH HOH . V 13 HOH B 10 610 1061 HOH HOH . V 13 HOH B 11 611 1006 HOH HOH . V 13 HOH B 12 612 1143 HOH HOH . V 13 HOH B 13 613 1095 HOH HOH . V 13 HOH B 14 614 1030 HOH HOH . V 13 HOH B 15 615 1060 HOH HOH . V 13 HOH B 16 616 1166 HOH HOH . V 13 HOH B 17 617 1041 HOH HOH . V 13 HOH B 18 618 1002 HOH HOH . V 13 HOH B 19 619 1004 HOH HOH . V 13 HOH B 20 620 1167 HOH HOH . V 13 HOH B 21 621 1153 HOH HOH . V 13 HOH B 22 622 1058 HOH HOH . V 13 HOH B 23 623 1008 HOH HOH . V 13 HOH B 24 624 1107 HOH HOH . V 13 HOH B 25 625 1089 HOH HOH . V 13 HOH B 26 626 1130 HOH HOH . V 13 HOH B 27 627 1075 HOH HOH . V 13 HOH B 28 628 1028 HOH HOH . V 13 HOH B 29 629 1037 HOH HOH . W 13 HOH C 1 601 1152 HOH HOH . W 13 HOH C 2 602 1149 HOH HOH . W 13 HOH C 3 603 1048 HOH HOH . W 13 HOH C 4 604 1087 HOH HOH . W 13 HOH C 5 605 1104 HOH HOH . W 13 HOH C 6 606 1045 HOH HOH . W 13 HOH C 7 607 1013 HOH HOH . W 13 HOH C 8 608 1117 HOH HOH . W 13 HOH C 9 609 1025 HOH HOH . W 13 HOH C 10 610 1155 HOH HOH . W 13 HOH C 11 611 1108 HOH HOH . W 13 HOH C 12 612 1106 HOH HOH . W 13 HOH C 13 613 1140 HOH HOH . W 13 HOH C 14 614 1113 HOH HOH . W 13 HOH C 15 615 1109 HOH HOH . W 13 HOH C 16 616 1064 HOH HOH . W 13 HOH C 17 617 1011 HOH HOH . W 13 HOH C 18 618 1102 HOH HOH . W 13 HOH C 19 619 1056 HOH HOH . W 13 HOH C 20 620 1046 HOH HOH . W 13 HOH C 21 621 1040 HOH HOH . W 13 HOH C 22 622 1115 HOH HOH . W 13 HOH C 23 623 1019 HOH HOH . W 13 HOH C 24 624 1021 HOH HOH . W 13 HOH C 25 625 1047 HOH HOH . W 13 HOH C 26 626 1015 HOH HOH . W 13 HOH C 27 627 1092 HOH HOH . W 13 HOH C 28 628 1003 HOH HOH . W 13 HOH C 29 629 1049 HOH HOH . W 13 HOH C 30 630 1125 HOH HOH . W 13 HOH C 31 631 1044 HOH HOH . W 13 HOH C 32 632 1124 HOH HOH . W 13 HOH C 33 633 1078 HOH HOH . W 13 HOH C 34 634 1059 HOH HOH . W 13 HOH C 35 635 1029 HOH HOH . W 13 HOH C 36 636 1134 HOH HOH . W 13 HOH C 37 637 1148 HOH HOH . W 13 HOH C 38 638 1097 HOH HOH . W 13 HOH C 39 639 1074 HOH HOH . W 13 HOH C 40 640 1053 HOH HOH . W 13 HOH C 41 641 1027 HOH HOH . W 13 HOH C 42 642 1057 HOH HOH . W 13 HOH C 43 643 1156 HOH HOH . W 13 HOH C 44 644 1091 HOH HOH . W 13 HOH C 45 645 1086 HOH HOH . W 13 HOH C 46 646 1157 HOH HOH . W 13 HOH C 47 647 1126 HOH HOH . W 13 HOH C 48 648 1110 HOH HOH . W 13 HOH C 49 649 1147 HOH HOH . W 13 HOH C 50 650 1042 HOH HOH . W 13 HOH C 51 651 1001 HOH HOH . W 13 HOH C 52 652 1083 HOH HOH . W 13 HOH C 53 653 1065 HOH HOH . W 13 HOH C 54 654 1088 HOH HOH . W 13 HOH C 55 655 1084 HOH HOH . W 13 HOH C 56 656 1131 HOH HOH . W 13 HOH C 57 657 1161 HOH HOH . W 13 HOH C 58 658 1035 HOH HOH . W 13 HOH C 59 659 1137 HOH HOH . W 13 HOH C 60 660 1063 HOH HOH . W 13 HOH C 61 661 1080 HOH HOH . W 13 HOH C 62 662 1150 HOH HOH . W 13 HOH C 63 663 1024 HOH HOH . W 13 HOH C 64 664 1036 HOH HOH . W 13 HOH C 65 665 1103 HOH HOH . W 13 HOH C 66 666 1082 HOH HOH . W 13 HOH C 67 667 1072 HOH HOH . W 13 HOH C 68 668 1163 HOH HOH . W 13 HOH C 69 669 1154 HOH HOH . W 13 HOH C 70 670 1164 HOH HOH . X 13 HOH D 1 601 1052 HOH HOH . X 13 HOH D 2 602 1033 HOH HOH . X 13 HOH D 3 603 1067 HOH HOH . X 13 HOH D 4 604 1160 HOH HOH . X 13 HOH D 5 605 1123 HOH HOH . X 13 HOH D 6 606 1133 HOH HOH . X 13 HOH D 7 607 1144 HOH HOH . X 13 HOH D 8 608 1050 HOH HOH . X 13 HOH D 9 609 1085 HOH HOH . X 13 HOH D 10 610 1145 HOH HOH . X 13 HOH D 11 611 1141 HOH HOH . X 13 HOH D 12 612 1165 HOH HOH . X 13 HOH D 13 613 1127 HOH HOH . X 13 HOH D 14 614 1158 HOH HOH . X 13 HOH D 15 615 1071 HOH HOH . X 13 HOH D 16 616 1172 HOH HOH . X 13 HOH D 17 617 1120 HOH HOH . Y 13 HOH E 1 201 1070 HOH HOH . Y 13 HOH E 2 202 1132 HOH HOH . Y 13 HOH E 3 203 1077 HOH HOH . Y 13 HOH E 4 204 1105 HOH HOH . Y 13 HOH E 5 205 1168 HOH HOH . Y 13 HOH E 6 206 1039 HOH HOH . Y 13 HOH E 7 207 1135 HOH HOH . Z 13 HOH F 1 501 1022 HOH HOH . Z 13 HOH F 2 502 1023 HOH HOH . Z 13 HOH F 3 503 1073 HOH HOH . Z 13 HOH F 4 504 1031 HOH HOH . Z 13 HOH F 5 505 1014 HOH HOH . Z 13 HOH F 6 506 1043 HOH HOH . Z 13 HOH F 7 507 1170 HOH HOH . Z 13 HOH F 8 508 1032 HOH HOH . Z 13 HOH F 9 509 1090 HOH HOH . Z 13 HOH F 10 510 1098 HOH HOH . Z 13 HOH F 11 511 1116 HOH HOH . Z 13 HOH F 12 512 1020 HOH HOH . Z 13 HOH F 13 513 1151 HOH HOH . Z 13 HOH F 14 514 1079 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 6 _atom_site.Cartn_x 18.6 _atom_site.Cartn_y 179.557 _atom_site.Cartn_z -18.576 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #