data_5CA7 # _model_server_result.job_id RVUfYwSqk9vXCHYW9dbkqw _model_server_result.datetime_utc '2024-11-15 11:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ca7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 5CA7 # _exptl.entry_id 5CA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CA7 _cell.length_a 84.113 _cell.length_b 84.113 _cell.length_c 399.442 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H,J,K 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 302 B CYS 543 1_555 B SG CYS 302 A CYS 543 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B OD2 ASP 186 A ASP 427 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc2 B OD2 ASP 188 A ASP 429 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 E O2G DGT . A DGT 601 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 E O2B DGT . A DGT 601 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 E O1A DGT . A DGT 601 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? metalc ? metalc6 F MG MG . A MG 602 1_555 I O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? hydrog WATSON-CRICK hydrog1 C N3 DC 1 P DC 1 1_555 D N1 DG 6 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 1 P DC 1 1_555 D O6 DG 6 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 1 P DC 1 1_555 D N2 DG 6 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 2 P DA 2 1_555 D N3 DT 5 T DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 2 P DA 2 1_555 D O4 DT 5 T DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DG 3 P DG 3 1_555 D N3 DC 4 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N2 DG 3 P DG 3 1_555 D O2 DC 4 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O6 DG 3 P DG 3 1_555 D N4 DC 4 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DT 4 P DT 4 1_555 D N1 DA 3 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O4 DT 4 P DT 4 1_555 D N6 DA 3 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DA 5 P DA 5 1_555 D N3 DT 2 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N6 DA 5 P DA 5 1_555 D O4 DT 2 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DC 6 P DC 6 1_555 D N1 DG 1 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N4 DC 6 P DC 6 1_555 D O6 DG 1 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O2 DC 6 P DC 6 1_555 D N2 DG 1 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CA7 _atom_sites.fract_transf_matrix[1][1] 0.011889 _atom_sites.fract_transf_matrix[1][2] 0.006864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 DGT A 1 601 601 DGT DGT . F 5 MG A 1 602 602 MG MG . G 6 SO4 A 1 603 603 SO4 SO4 . H 7 HOH B 1 601 1 HOH HOH . H 7 HOH B 2 602 3 HOH HOH . H 7 HOH B 3 603 4 HOH HOH . H 7 HOH B 4 604 163 HOH HOH . H 7 HOH B 5 605 7 HOH HOH . H 7 HOH B 6 606 2 HOH HOH . H 7 HOH B 7 607 6 HOH HOH . H 7 HOH B 8 608 8 HOH HOH . H 7 HOH B 9 609 10 HOH HOH . H 7 HOH B 10 610 13 HOH HOH . H 7 HOH B 11 611 170 HOH HOH . H 7 HOH B 12 612 5 HOH HOH . H 7 HOH B 13 613 11 HOH HOH . H 7 HOH B 14 614 9 HOH HOH . H 7 HOH B 15 615 16 HOH HOH . H 7 HOH B 16 616 12 HOH HOH . H 7 HOH B 17 617 14 HOH HOH . H 7 HOH B 18 618 15 HOH HOH . H 7 HOH B 19 619 17 HOH HOH . H 7 HOH B 20 620 19 HOH HOH . H 7 HOH B 21 621 18 HOH HOH . H 7 HOH B 22 622 167 HOH HOH . H 7 HOH B 23 623 28 HOH HOH . H 7 HOH B 24 624 23 HOH HOH . H 7 HOH B 25 625 24 HOH HOH . H 7 HOH B 26 626 158 HOH HOH . H 7 HOH B 27 627 21 HOH HOH . H 7 HOH B 28 628 31 HOH HOH . H 7 HOH B 29 629 25 HOH HOH . H 7 HOH B 30 630 26 HOH HOH . H 7 HOH B 31 631 27 HOH HOH . H 7 HOH B 32 632 22 HOH HOH . H 7 HOH B 33 633 30 HOH HOH . H 7 HOH B 34 634 20 HOH HOH . H 7 HOH B 35 635 29 HOH HOH . H 7 HOH B 36 636 41 HOH HOH . H 7 HOH B 37 637 36 HOH HOH . H 7 HOH B 38 638 44 HOH HOH . H 7 HOH B 39 639 186 HOH HOH . H 7 HOH B 40 640 39 HOH HOH . H 7 HOH B 41 641 32 HOH HOH . H 7 HOH B 42 642 34 HOH HOH . H 7 HOH B 43 643 33 HOH HOH . H 7 HOH B 44 644 37 HOH HOH . H 7 HOH B 45 645 47 HOH HOH . H 7 HOH B 46 646 40 HOH HOH . H 7 HOH B 47 647 45 HOH HOH . H 7 HOH B 48 648 38 HOH HOH . H 7 HOH B 49 649 46 HOH HOH . H 7 HOH B 50 650 42 HOH HOH . H 7 HOH B 51 651 35 HOH HOH . H 7 HOH B 52 652 60 HOH HOH . H 7 HOH B 53 653 49 HOH HOH . H 7 HOH B 54 654 52 HOH HOH . H 7 HOH B 55 655 56 HOH HOH . H 7 HOH B 56 656 48 HOH HOH . H 7 HOH B 57 657 166 HOH HOH . H 7 HOH B 58 658 53 HOH HOH . H 7 HOH B 59 659 179 HOH HOH . H 7 HOH B 60 660 55 HOH HOH . H 7 HOH B 61 661 54 HOH HOH . H 7 HOH B 62 662 51 HOH HOH . H 7 HOH B 63 663 187 HOH HOH . H 7 HOH B 64 664 57 HOH HOH . H 7 HOH B 65 665 59 HOH HOH . H 7 HOH B 66 666 58 HOH HOH . H 7 HOH B 67 667 50 HOH HOH . H 7 HOH B 68 668 172 HOH HOH . H 7 HOH B 69 669 61 HOH HOH . H 7 HOH B 70 670 160 HOH HOH . H 7 HOH B 71 671 62 HOH HOH . H 7 HOH B 72 672 162 HOH HOH . H 7 HOH B 73 673 64 HOH HOH . H 7 HOH B 74 674 130 HOH HOH . H 7 HOH B 75 675 67 HOH HOH . H 7 HOH B 76 676 65 HOH HOH . H 7 HOH B 77 677 66 HOH HOH . H 7 HOH B 78 678 68 HOH HOH . H 7 HOH B 79 679 69 HOH HOH . H 7 HOH B 80 680 157 HOH HOH . H 7 HOH B 81 681 164 HOH HOH . H 7 HOH B 82 682 185 HOH HOH . I 7 HOH A 1 701 71 HOH HOH . I 7 HOH A 2 702 70 HOH HOH . I 7 HOH A 3 703 72 HOH HOH . I 7 HOH A 4 704 73 HOH HOH . I 7 HOH A 5 705 75 HOH HOH . I 7 HOH A 6 706 76 HOH HOH . I 7 HOH A 7 707 180 HOH HOH . I 7 HOH A 8 708 74 HOH HOH . I 7 HOH A 9 709 92 HOH HOH . I 7 HOH A 10 710 77 HOH HOH . I 7 HOH A 11 711 78 HOH HOH . I 7 HOH A 12 712 81 HOH HOH . I 7 HOH A 13 713 82 HOH HOH . I 7 HOH A 14 714 80 HOH HOH . I 7 HOH A 15 715 89 HOH HOH . I 7 HOH A 16 716 79 HOH HOH . I 7 HOH A 17 717 83 HOH HOH . I 7 HOH A 18 718 84 HOH HOH . I 7 HOH A 19 719 87 HOH HOH . I 7 HOH A 20 720 86 HOH HOH . I 7 HOH A 21 721 85 HOH HOH . I 7 HOH A 22 722 88 HOH HOH . I 7 HOH A 23 723 43 HOH HOH . I 7 HOH A 24 724 91 HOH HOH . I 7 HOH A 25 725 90 HOH HOH . I 7 HOH A 26 726 93 HOH HOH . I 7 HOH A 27 727 96 HOH HOH . I 7 HOH A 28 728 97 HOH HOH . I 7 HOH A 29 729 101 HOH HOH . I 7 HOH A 30 730 94 HOH HOH . I 7 HOH A 31 731 95 HOH HOH . I 7 HOH A 32 732 119 HOH HOH . I 7 HOH A 33 733 117 HOH HOH . I 7 HOH A 34 734 109 HOH HOH . I 7 HOH A 35 735 156 HOH HOH . I 7 HOH A 36 736 105 HOH HOH . I 7 HOH A 37 737 99 HOH HOH . I 7 HOH A 38 738 98 HOH HOH . I 7 HOH A 39 739 100 HOH HOH . I 7 HOH A 40 740 102 HOH HOH . I 7 HOH A 41 741 107 HOH HOH . I 7 HOH A 42 742 171 HOH HOH . I 7 HOH A 43 743 104 HOH HOH . I 7 HOH A 44 744 108 HOH HOH . I 7 HOH A 45 745 103 HOH HOH . I 7 HOH A 46 746 118 HOH HOH . I 7 HOH A 47 747 178 HOH HOH . I 7 HOH A 48 748 120 HOH HOH . I 7 HOH A 49 749 106 HOH HOH . I 7 HOH A 50 750 114 HOH HOH . I 7 HOH A 51 751 110 HOH HOH . I 7 HOH A 52 752 112 HOH HOH . I 7 HOH A 53 753 115 HOH HOH . I 7 HOH A 54 754 111 HOH HOH . I 7 HOH A 55 755 124 HOH HOH . I 7 HOH A 56 756 122 HOH HOH . I 7 HOH A 57 757 181 HOH HOH . I 7 HOH A 58 758 125 HOH HOH . I 7 HOH A 59 759 123 HOH HOH . I 7 HOH A 60 760 121 HOH HOH . I 7 HOH A 61 761 113 HOH HOH . I 7 HOH A 62 762 126 HOH HOH . I 7 HOH A 63 763 116 HOH HOH . I 7 HOH A 64 764 177 HOH HOH . I 7 HOH A 65 765 153 HOH HOH . I 7 HOH A 66 766 127 HOH HOH . I 7 HOH A 67 767 128 HOH HOH . I 7 HOH A 68 768 161 HOH HOH . I 7 HOH A 69 769 168 HOH HOH . I 7 HOH A 70 770 63 HOH HOH . I 7 HOH A 71 771 129 HOH HOH . I 7 HOH A 72 772 165 HOH HOH . I 7 HOH A 73 773 131 HOH HOH . I 7 HOH A 74 774 132 HOH HOH . I 7 HOH A 75 775 159 HOH HOH . I 7 HOH A 76 776 133 HOH HOH . I 7 HOH A 77 777 173 HOH HOH . I 7 HOH A 78 778 134 HOH HOH . I 7 HOH A 79 779 182 HOH HOH . I 7 HOH A 80 780 184 HOH HOH . I 7 HOH A 81 781 135 HOH HOH . J 7 HOH P 1 101 136 HOH HOH . J 7 HOH P 2 102 137 HOH HOH . J 7 HOH P 3 103 155 HOH HOH . J 7 HOH P 4 104 139 HOH HOH . J 7 HOH P 5 105 138 HOH HOH . J 7 HOH P 6 106 140 HOH HOH . J 7 HOH P 7 107 141 HOH HOH . J 7 HOH P 8 108 142 HOH HOH . J 7 HOH P 9 109 169 HOH HOH . J 7 HOH P 10 110 143 HOH HOH . J 7 HOH P 11 111 144 HOH HOH . J 7 HOH P 12 112 145 HOH HOH . K 7 HOH T 1 101 175 HOH HOH . K 7 HOH T 2 102 147 HOH HOH . K 7 HOH T 3 103 146 HOH HOH . K 7 HOH T 4 104 148 HOH HOH . K 7 HOH T 5 105 149 HOH HOH . K 7 HOH T 6 106 151 HOH HOH . K 7 HOH T 7 107 150 HOH HOH . K 7 HOH T 8 108 152 HOH HOH . K 7 HOH T 9 109 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 23.9 _atom_site.Cartn_y -40.749 _atom_site.Cartn_z 47.197 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #