data_5CA8 # _model_server_result.job_id ET1jY-OH_vsBBPh6hPV-1w _model_server_result.datetime_utc '2025-02-27 13:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ca8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5CA8 # _exptl.entry_id 5CA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.12 _cell.angle_gamma 90 _cell.entry_id 5CA8 _cell.length_a 228.12 _cell.length_b 43.62 _cell.length_c 97.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O SER 535 A SER 535 1_555 A N THR 537 A THR 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A OG SER 72 A SER 72 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OE2 GLU 125 A GLU 125 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc3 B MG MG . A MG 701 1_555 C O3B GDP . A GDP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc4 B MG MG . A MG 701 1_555 D O HOH . A HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CA8 _atom_sites.fract_transf_matrix[1][1] 0.004384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 4 MG MG . C 3 GDP A 1 702 1000 GDP GDP . D 4 HOH A 1 801 52 HOH HOH . D 4 HOH A 2 802 39 HOH HOH . D 4 HOH A 3 803 108 HOH HOH . D 4 HOH A 4 804 144 HOH HOH . D 4 HOH A 5 805 97 HOH HOH . D 4 HOH A 6 806 107 HOH HOH . D 4 HOH A 7 807 115 HOH HOH . D 4 HOH A 8 808 27 HOH HOH . D 4 HOH A 9 809 79 HOH HOH . D 4 HOH A 10 810 6 HOH HOH . D 4 HOH A 11 811 33 HOH HOH . D 4 HOH A 12 812 112 HOH HOH . D 4 HOH A 13 813 66 HOH HOH . D 4 HOH A 14 814 1 HOH HOH . D 4 HOH A 15 815 42 HOH HOH . D 4 HOH A 16 816 90 HOH HOH . D 4 HOH A 17 817 113 HOH HOH . D 4 HOH A 18 818 67 HOH HOH . D 4 HOH A 19 819 40 HOH HOH . D 4 HOH A 20 820 61 HOH HOH . D 4 HOH A 21 821 20 HOH HOH . D 4 HOH A 22 822 119 HOH HOH . D 4 HOH A 23 823 54 HOH HOH . D 4 HOH A 24 824 3 HOH HOH . D 4 HOH A 25 825 17 HOH HOH . D 4 HOH A 26 826 128 HOH HOH . D 4 HOH A 27 827 68 HOH HOH . D 4 HOH A 28 828 74 HOH HOH . D 4 HOH A 29 829 139 HOH HOH . D 4 HOH A 30 830 100 HOH HOH . D 4 HOH A 31 831 44 HOH HOH . D 4 HOH A 32 832 2 HOH HOH . D 4 HOH A 33 833 114 HOH HOH . D 4 HOH A 34 834 41 HOH HOH . D 4 HOH A 35 835 71 HOH HOH . D 4 HOH A 36 836 130 HOH HOH . D 4 HOH A 37 837 98 HOH HOH . D 4 HOH A 38 838 55 HOH HOH . D 4 HOH A 39 839 117 HOH HOH . D 4 HOH A 40 840 29 HOH HOH . D 4 HOH A 41 841 36 HOH HOH . D 4 HOH A 42 842 14 HOH HOH . D 4 HOH A 43 843 92 HOH HOH . D 4 HOH A 44 844 77 HOH HOH . D 4 HOH A 45 845 23 HOH HOH . D 4 HOH A 46 846 105 HOH HOH . D 4 HOH A 47 847 103 HOH HOH . D 4 HOH A 48 848 48 HOH HOH . D 4 HOH A 49 849 38 HOH HOH . D 4 HOH A 50 850 2 HOH HOH . D 4 HOH A 51 851 34 HOH HOH . D 4 HOH A 52 852 16 HOH HOH . D 4 HOH A 53 853 53 HOH HOH . D 4 HOH A 54 854 75 HOH HOH . D 4 HOH A 55 855 57 HOH HOH . D 4 HOH A 56 856 63 HOH HOH . D 4 HOH A 57 857 28 HOH HOH . D 4 HOH A 58 858 82 HOH HOH . D 4 HOH A 59 859 10 HOH HOH . D 4 HOH A 60 860 60 HOH HOH . D 4 HOH A 61 861 84 HOH HOH . D 4 HOH A 62 862 45 HOH HOH . D 4 HOH A 63 863 72 HOH HOH . D 4 HOH A 64 864 9 HOH HOH . D 4 HOH A 65 865 47 HOH HOH . D 4 HOH A 66 866 37 HOH HOH . D 4 HOH A 67 867 78 HOH HOH . D 4 HOH A 68 868 3 HOH HOH . D 4 HOH A 69 869 138 HOH HOH . D 4 HOH A 70 870 62 HOH HOH . D 4 HOH A 71 871 70 HOH HOH . D 4 HOH A 72 872 31 HOH HOH . D 4 HOH A 73 873 118 HOH HOH . D 4 HOH A 74 874 46 HOH HOH . D 4 HOH A 75 875 49 HOH HOH . D 4 HOH A 76 876 106 HOH HOH . D 4 HOH A 77 877 51 HOH HOH . D 4 HOH A 78 878 73 HOH HOH . D 4 HOH A 79 879 59 HOH HOH . D 4 HOH A 80 880 135 HOH HOH . D 4 HOH A 81 881 116 HOH HOH . D 4 HOH A 82 882 87 HOH HOH . D 4 HOH A 83 883 22 HOH HOH . D 4 HOH A 84 884 56 HOH HOH . D 4 HOH A 85 885 91 HOH HOH . D 4 HOH A 86 886 121 HOH HOH . D 4 HOH A 87 887 76 HOH HOH . D 4 HOH A 88 888 80 HOH HOH . D 4 HOH A 89 889 131 HOH HOH . D 4 HOH A 90 890 143 HOH HOH . D 4 HOH A 91 891 24 HOH HOH . D 4 HOH A 92 892 89 HOH HOH . D 4 HOH A 93 893 104 HOH HOH . D 4 HOH A 94 894 4 HOH HOH . D 4 HOH A 95 895 58 HOH HOH . D 4 HOH A 96 896 19 HOH HOH . D 4 HOH A 97 897 26 HOH HOH . D 4 HOH A 98 898 5 HOH HOH . D 4 HOH A 99 899 85 HOH HOH . D 4 HOH A 100 900 129 HOH HOH . D 4 HOH A 101 901 21 HOH HOH . D 4 HOH A 102 902 111 HOH HOH . D 4 HOH A 103 903 145 HOH HOH . D 4 HOH A 104 904 93 HOH HOH . D 4 HOH A 105 905 94 HOH HOH . D 4 HOH A 106 906 132 HOH HOH . D 4 HOH A 107 907 35 HOH HOH . D 4 HOH A 108 908 140 HOH HOH . D 4 HOH A 109 909 146 HOH HOH . D 4 HOH A 110 910 88 HOH HOH . D 4 HOH A 111 911 86 HOH HOH . D 4 HOH A 112 912 109 HOH HOH . D 4 HOH A 113 913 65 HOH HOH . D 4 HOH A 114 914 125 HOH HOH . D 4 HOH A 115 915 142 HOH HOH . D 4 HOH A 116 916 124 HOH HOH . D 4 HOH A 117 917 96 HOH HOH . D 4 HOH A 118 918 99 HOH HOH . D 4 HOH A 119 919 81 HOH HOH . D 4 HOH A 120 920 136 HOH HOH . D 4 HOH A 121 921 69 HOH HOH . D 4 HOH A 122 922 137 HOH HOH . D 4 HOH A 123 923 120 HOH HOH . D 4 HOH A 124 924 141 HOH HOH . D 4 HOH A 125 925 123 HOH HOH . D 4 HOH A 126 926 95 HOH HOH . D 4 HOH A 127 927 8 HOH HOH . D 4 HOH A 128 928 126 HOH HOH . D 4 HOH A 129 929 133 HOH HOH . D 4 HOH A 130 930 7 HOH HOH . D 4 HOH A 131 931 110 HOH HOH . D 4 HOH A 132 932 101 HOH HOH . D 4 HOH A 133 933 102 HOH HOH . D 4 HOH A 134 934 83 HOH HOH . D 4 HOH A 135 935 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 91.757 _atom_site.Cartn_y -7.771 _atom_site.Cartn_z 28.125 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #