data_5CAD # _model_server_result.job_id 5oCE7n4gdsfrEMRpNmggvw _model_server_result.datetime_utc '2024-12-01 12:43:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5CAD # _exptl.entry_id 5CAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 129.114 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROGLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CAD _cell.length_a 119.33 _cell.length_b 119.33 _cell.length_c 158.19 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 25 A ALA 25 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A O GLY 28 A GLY 28 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 B MG MG . A MG 401 1_555 E O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 B MG MG . A MG 401 1_555 E O HOH . A HOH 671 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 B MG MG . A MG 401 1_555 E O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C5 H7 N O3' _chem_comp.formula_weight 129.114 _chem_comp.id PCA _chem_comp.mon_nstd_flag n _chem_comp.name 'PYROGLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PCA sing 243 n n N CD PCA sing 244 n n N H PCA sing 245 n n CA CB PCA sing 246 n n CA C PCA sing 247 n n CA HA PCA sing 248 n n CB CG PCA sing 249 n n CB HB2 PCA sing 250 n n CB HB3 PCA sing 251 n n CG CD PCA sing 252 n n CG HG2 PCA sing 253 n n CG HG3 PCA sing 254 n n CD OE PCA doub 255 n n C O PCA doub 256 n n C OXT PCA sing 257 n n OXT HXT PCA sing 258 n n # _atom_sites.entry_id 5CAD _atom_sites.fract_transf_matrix[1][1] 0.00838 _atom_sites.fract_transf_matrix[1][2] 0.004838 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 ACT A 1 402 1 ACT ACT . D 4 PCA A 1 403 1 PCA PCA . E 5 HOH A 1 501 59 HOH HOH . E 5 HOH A 2 502 108 HOH HOH . E 5 HOH A 3 503 181 HOH HOH . E 5 HOH A 4 504 40 HOH HOH . E 5 HOH A 5 505 81 HOH HOH . E 5 HOH A 6 506 103 HOH HOH . E 5 HOH A 7 507 46 HOH HOH . E 5 HOH A 8 508 61 HOH HOH . E 5 HOH A 9 509 105 HOH HOH . E 5 HOH A 10 510 56 HOH HOH . E 5 HOH A 11 511 77 HOH HOH . E 5 HOH A 12 512 51 HOH HOH . E 5 HOH A 13 513 56 HOH HOH . E 5 HOH A 14 514 13 HOH HOH . E 5 HOH A 15 515 39 HOH HOH . E 5 HOH A 16 516 66 HOH HOH . E 5 HOH A 17 517 122 HOH HOH . E 5 HOH A 18 518 1 HOH HOH . E 5 HOH A 19 519 5 HOH HOH . E 5 HOH A 20 520 100 HOH HOH . E 5 HOH A 21 521 82 HOH HOH . E 5 HOH A 22 522 20 HOH HOH . E 5 HOH A 23 523 101 HOH HOH . E 5 HOH A 24 524 78 HOH HOH . E 5 HOH A 25 525 41 HOH HOH . E 5 HOH A 26 526 91 HOH HOH . E 5 HOH A 27 527 71 HOH HOH . E 5 HOH A 28 528 69 HOH HOH . E 5 HOH A 29 529 106 HOH HOH . E 5 HOH A 30 530 176 HOH HOH . E 5 HOH A 31 531 183 HOH HOH . E 5 HOH A 32 532 12 HOH HOH . E 5 HOH A 33 533 84 HOH HOH . E 5 HOH A 34 534 18 HOH HOH . E 5 HOH A 35 535 96 HOH HOH . E 5 HOH A 36 536 243 HOH HOH . E 5 HOH A 37 537 29 HOH HOH . E 5 HOH A 38 538 95 HOH HOH . E 5 HOH A 39 539 116 HOH HOH . E 5 HOH A 40 540 88 HOH HOH . E 5 HOH A 41 541 186 HOH HOH . E 5 HOH A 42 542 9 HOH HOH . E 5 HOH A 43 543 123 HOH HOH . E 5 HOH A 44 544 92 HOH HOH . E 5 HOH A 45 545 213 HOH HOH . E 5 HOH A 46 546 503 HOH HOH . E 5 HOH A 47 547 126 HOH HOH . E 5 HOH A 48 548 57 HOH HOH . E 5 HOH A 49 549 21 HOH HOH . E 5 HOH A 50 550 94 HOH HOH . E 5 HOH A 51 551 98 HOH HOH . E 5 HOH A 52 552 26 HOH HOH . E 5 HOH A 53 553 62 HOH HOH . E 5 HOH A 54 554 230 HOH HOH . E 5 HOH A 55 555 2 HOH HOH . E 5 HOH A 56 556 48 HOH HOH . E 5 HOH A 57 557 7 HOH HOH . E 5 HOH A 58 558 66 HOH HOH . E 5 HOH A 59 559 322 HOH HOH . E 5 HOH A 60 560 313 HOH HOH . E 5 HOH A 61 561 11 HOH HOH . E 5 HOH A 62 562 75 HOH HOH . E 5 HOH A 63 563 42 HOH HOH . E 5 HOH A 64 564 574 HOH HOH . E 5 HOH A 65 565 38 HOH HOH . E 5 HOH A 66 566 22 HOH HOH . E 5 HOH A 67 567 90 HOH HOH . E 5 HOH A 68 568 96 HOH HOH . E 5 HOH A 69 569 109 HOH HOH . E 5 HOH A 70 570 31 HOH HOH . E 5 HOH A 71 571 319 HOH HOH . E 5 HOH A 72 572 65 HOH HOH . E 5 HOH A 73 573 32 HOH HOH . E 5 HOH A 74 574 37 HOH HOH . E 5 HOH A 75 575 177 HOH HOH . E 5 HOH A 76 576 287 HOH HOH . E 5 HOH A 77 577 118 HOH HOH . E 5 HOH A 78 578 28 HOH HOH . E 5 HOH A 79 579 86 HOH HOH . E 5 HOH A 80 580 15 HOH HOH . E 5 HOH A 81 581 17 HOH HOH . E 5 HOH A 82 582 3 HOH HOH . E 5 HOH A 83 583 93 HOH HOH . E 5 HOH A 84 584 321 HOH HOH . E 5 HOH A 85 585 63 HOH HOH . E 5 HOH A 86 586 87 HOH HOH . E 5 HOH A 87 587 41 HOH HOH . E 5 HOH A 88 588 120 HOH HOH . E 5 HOH A 89 589 45 HOH HOH . E 5 HOH A 90 590 256 HOH HOH . E 5 HOH A 91 591 80 HOH HOH . E 5 HOH A 92 592 63 HOH HOH . E 5 HOH A 93 593 10 HOH HOH . E 5 HOH A 94 594 26 HOH HOH . E 5 HOH A 95 595 4 HOH HOH . E 5 HOH A 96 596 33 HOH HOH . E 5 HOH A 97 597 59 HOH HOH . E 5 HOH A 98 598 131 HOH HOH . E 5 HOH A 99 599 22 HOH HOH . E 5 HOH A 100 600 180 HOH HOH . E 5 HOH A 101 601 277 HOH HOH . E 5 HOH A 102 602 99 HOH HOH . E 5 HOH A 103 603 27 HOH HOH . E 5 HOH A 104 604 6 HOH HOH . E 5 HOH A 105 605 89 HOH HOH . E 5 HOH A 106 606 20 HOH HOH . E 5 HOH A 107 607 58 HOH HOH . E 5 HOH A 108 608 309 HOH HOH . E 5 HOH A 109 609 242 HOH HOH . E 5 HOH A 110 610 97 HOH HOH . E 5 HOH A 111 611 53 HOH HOH . E 5 HOH A 112 612 47 HOH HOH . E 5 HOH A 113 613 248 HOH HOH . E 5 HOH A 114 614 17 HOH HOH . E 5 HOH A 115 615 137 HOH HOH . E 5 HOH A 116 616 8 HOH HOH . E 5 HOH A 117 617 263 HOH HOH . E 5 HOH A 118 618 29 HOH HOH . E 5 HOH A 119 619 262 HOH HOH . E 5 HOH A 120 620 10 HOH HOH . E 5 HOH A 121 621 110 HOH HOH . E 5 HOH A 122 622 76 HOH HOH . E 5 HOH A 123 623 43 HOH HOH . E 5 HOH A 124 624 12 HOH HOH . E 5 HOH A 125 625 40 HOH HOH . E 5 HOH A 126 626 39 HOH HOH . E 5 HOH A 127 627 49 HOH HOH . E 5 HOH A 128 628 211 HOH HOH . E 5 HOH A 129 629 50 HOH HOH . E 5 HOH A 130 630 32 HOH HOH . E 5 HOH A 131 631 76 HOH HOH . E 5 HOH A 132 632 471 HOH HOH . E 5 HOH A 133 633 49 HOH HOH . E 5 HOH A 134 634 244 HOH HOH . E 5 HOH A 135 635 238 HOH HOH . E 5 HOH A 136 636 36 HOH HOH . E 5 HOH A 137 637 250 HOH HOH . E 5 HOH A 138 638 278 HOH HOH . E 5 HOH A 139 639 25 HOH HOH . E 5 HOH A 140 640 80 HOH HOH . E 5 HOH A 141 641 207 HOH HOH . E 5 HOH A 142 642 112 HOH HOH . E 5 HOH A 143 643 67 HOH HOH . E 5 HOH A 144 644 87 HOH HOH . E 5 HOH A 145 645 74 HOH HOH . E 5 HOH A 146 646 33 HOH HOH . E 5 HOH A 147 647 88 HOH HOH . E 5 HOH A 148 648 264 HOH HOH . E 5 HOH A 149 649 77 HOH HOH . E 5 HOH A 150 650 90 HOH HOH . E 5 HOH A 151 651 79 HOH HOH . E 5 HOH A 152 652 34 HOH HOH . E 5 HOH A 153 653 55 HOH HOH . E 5 HOH A 154 654 576 HOH HOH . E 5 HOH A 155 655 70 HOH HOH . E 5 HOH A 156 656 132 HOH HOH . E 5 HOH A 157 657 300 HOH HOH . E 5 HOH A 158 658 13 HOH HOH . E 5 HOH A 159 659 229 HOH HOH . E 5 HOH A 160 660 104 HOH HOH . E 5 HOH A 161 661 44 HOH HOH . E 5 HOH A 162 662 101 HOH HOH . E 5 HOH A 163 663 124 HOH HOH . E 5 HOH A 164 664 54 HOH HOH . E 5 HOH A 165 665 280 HOH HOH . E 5 HOH A 166 666 14 HOH HOH . E 5 HOH A 167 667 62 HOH HOH . E 5 HOH A 168 668 206 HOH HOH . E 5 HOH A 169 669 203 HOH HOH . E 5 HOH A 170 670 52 HOH HOH . E 5 HOH A 171 671 179 HOH HOH . E 5 HOH A 172 672 28 HOH HOH . E 5 HOH A 173 673 14 HOH HOH . E 5 HOH A 174 674 23 HOH HOH . E 5 HOH A 175 675 236 HOH HOH . E 5 HOH A 176 676 1 HOH HOH . E 5 HOH A 177 677 284 HOH HOH . E 5 HOH A 178 678 3 HOH HOH . E 5 HOH A 179 679 46 HOH HOH . E 5 HOH A 180 680 64 HOH HOH . E 5 HOH A 181 681 573 HOH HOH . E 5 HOH A 182 682 86 HOH HOH . E 5 HOH A 183 683 30 HOH HOH . E 5 HOH A 184 684 51 HOH HOH . E 5 HOH A 185 685 60 HOH HOH . E 5 HOH A 186 686 99 HOH HOH . E 5 HOH A 187 687 269 HOH HOH . E 5 HOH A 188 688 578 HOH HOH . E 5 HOH A 189 689 18 HOH HOH . E 5 HOH A 190 690 16 HOH HOH . E 5 HOH A 191 691 74 HOH HOH . E 5 HOH A 192 692 89 HOH HOH . E 5 HOH A 193 693 35 HOH HOH . E 5 HOH A 194 694 117 HOH HOH . E 5 HOH A 195 695 305 HOH HOH . E 5 HOH A 196 696 67 HOH HOH . E 5 HOH A 197 697 83 HOH HOH . E 5 HOH A 198 698 103 HOH HOH . E 5 HOH A 199 699 45 HOH HOH . E 5 HOH A 200 700 100 HOH HOH . E 5 HOH A 201 701 27 HOH HOH . E 5 HOH A 202 702 23 HOH HOH . E 5 HOH A 203 703 258 HOH HOH . E 5 HOH A 204 704 91 HOH HOH . E 5 HOH A 205 705 24 HOH HOH . E 5 HOH A 206 706 491 HOH HOH . E 5 HOH A 207 707 6 HOH HOH . E 5 HOH A 208 708 92 HOH HOH . E 5 HOH A 209 709 290 HOH HOH . E 5 HOH A 210 710 42 HOH HOH . E 5 HOH A 211 711 65 HOH HOH . E 5 HOH A 212 712 279 HOH HOH . E 5 HOH A 213 713 44 HOH HOH . E 5 HOH A 214 714 235 HOH HOH . E 5 HOH A 215 715 326 HOH HOH . E 5 HOH A 216 716 70 HOH HOH . E 5 HOH A 217 717 24 HOH HOH . E 5 HOH A 218 718 8 HOH HOH . E 5 HOH A 219 719 43 HOH HOH . E 5 HOH A 220 720 317 HOH HOH . E 5 HOH A 221 721 133 HOH HOH . E 5 HOH A 222 722 301 HOH HOH . E 5 HOH A 223 723 109 HOH HOH . E 5 HOH A 224 724 58 HOH HOH . E 5 HOH A 225 725 75 HOH HOH . E 5 HOH A 226 726 61 HOH HOH . E 5 HOH A 227 727 95 HOH HOH . E 5 HOH A 228 728 121 HOH HOH . E 5 HOH A 229 729 97 HOH HOH . E 5 HOH A 230 730 53 HOH HOH . E 5 HOH A 231 731 7 HOH HOH . E 5 HOH A 232 732 505 HOH HOH . E 5 HOH A 233 733 276 HOH HOH . E 5 HOH A 234 734 502 HOH HOH . E 5 HOH A 235 735 479 HOH HOH . E 5 HOH A 236 736 175 HOH HOH . E 5 HOH A 237 737 178 HOH HOH . E 5 HOH A 238 738 93 HOH HOH . E 5 HOH A 239 739 490 HOH HOH . E 5 HOH A 240 740 78 HOH HOH . E 5 HOH A 241 741 231 HOH HOH . E 5 HOH A 242 742 52 HOH HOH . E 5 HOH A 243 743 107 HOH HOH . E 5 HOH A 244 744 487 HOH HOH . E 5 HOH A 245 745 492 HOH HOH . E 5 HOH A 246 746 69 HOH HOH . E 5 HOH A 247 747 37 HOH HOH . E 5 HOH A 248 748 577 HOH HOH . E 5 HOH A 249 749 57 HOH HOH . E 5 HOH A 250 750 21 HOH HOH . E 5 HOH A 251 751 489 HOH HOH . E 5 HOH A 252 752 501 HOH HOH . E 5 HOH A 253 753 54 HOH HOH . E 5 HOH A 254 754 85 HOH HOH . E 5 HOH A 255 755 111 HOH HOH . E 5 HOH A 256 756 486 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PCA . . . D 4 10.749 50.293 68.615 0.77 48.38 ? N PCA 403 A 1 HETATM 2 C CA PCA . . . D 4 11.851 49.364 68.972 0.77 45.9 ? CA PCA 403 A 1 HETATM 3 C CB PCA . . . D 4 11.971 49.458 70.487 0.77 49.37 ? CB PCA 403 A 1 HETATM 4 C CG PCA . . . D 4 11.067 50.629 70.851 0.77 49.49 ? CG PCA 403 A 1 HETATM 5 C CD PCA . . . D 4 10.431 51.017 69.686 0.77 49.45 ? CD PCA 403 A 1 HETATM 6 O OE PCA . . . D 4 9.533 51.875 69.663 0.77 49.34 ? OE PCA 403 A 1 HETATM 7 C C PCA . . . D 4 11.497 48.059 68.649 0.77 44.12 ? C PCA 403 A 1 HETATM 8 O O PCA . . . D 4 10.329 47.857 68.246 0.77 43.04 ? O PCA 403 A 1 HETATM 9 O OXT PCA . . . D 4 12.403 47.193 68.695 0.77 39.49 ? OXT PCA 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #