data_5CAE # _model_server_result.job_id WaXre1kbbMVtEogOjKHqOA _model_server_result.datetime_utc '2024-12-12 00:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 5CAE # _exptl.entry_id 5CAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.9 _cell.angle_gamma 90 _cell.entry_id 5CAE _cell.length_a 86.67 _cell.length_b 81.02 _cell.length_c 50.78 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C SER 124 B SER 124 1_555 B N CSS 125 B CSS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C CSS 125 B CSS 125 1_555 B N ASN 126 B ASN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O4 PO4 . A PO4 404 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 J O HOH . A HOH 505 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 J O HOH . A HOH 547 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 J O HOH . A HOH 564 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 G MG MG . B MG 401 1_555 H O4 SIN . B SIN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 G MG MG . B MG 401 1_555 K O HOH . B HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 407 n n C1 O2 SIN sing 408 n n C1 C2 SIN sing 409 n n O2 HO2 SIN sing 410 n n C2 C3 SIN sing 411 n n C2 H21 SIN sing 412 n n C2 H22 SIN sing 413 n n C3 C4 SIN sing 414 n n C3 H31 SIN sing 415 n n C3 H32 SIN sing 416 n n C4 O3 SIN doub 417 n n C4 O4 SIN sing 418 n n O4 HO4 SIN sing 419 n n # _atom_sites.entry_id 5CAE _atom_sites.fract_transf_matrix[1][1] 0.011538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00307 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 401 2 COA COA . D 4 CL A 1 402 1 CL CL . E 5 GOL A 1 403 2 GOL GOL . F 6 PO4 A 1 404 1 PO4 PO4 . G 7 MG B 1 401 1 MG MG . H 8 SIN B 1 402 1 SIN SIN . I 5 GOL B 1 403 6 GOL GOL . J 9 HOH A 1 501 97 HOH HOH . J 9 HOH A 2 502 151 HOH HOH . J 9 HOH A 3 503 117 HOH HOH . J 9 HOH A 4 504 75 HOH HOH . J 9 HOH A 5 505 93 HOH HOH . J 9 HOH A 6 506 181 HOH HOH . J 9 HOH A 7 507 288 HOH HOH . J 9 HOH A 8 508 125 HOH HOH . J 9 HOH A 9 509 23 HOH HOH . J 9 HOH A 10 510 101 HOH HOH . J 9 HOH A 11 511 16 HOH HOH . J 9 HOH A 12 512 34 HOH HOH . J 9 HOH A 13 513 64 HOH HOH . J 9 HOH A 14 514 153 HOH HOH . J 9 HOH A 15 515 174 HOH HOH . J 9 HOH A 16 516 39 HOH HOH . J 9 HOH A 17 517 20 HOH HOH . J 9 HOH A 18 518 82 HOH HOH . J 9 HOH A 19 519 80 HOH HOH . J 9 HOH A 20 520 137 HOH HOH . J 9 HOH A 21 521 21 HOH HOH . J 9 HOH A 22 522 51 HOH HOH . J 9 HOH A 23 523 140 HOH HOH . J 9 HOH A 24 524 10 HOH HOH . J 9 HOH A 25 525 49 HOH HOH . J 9 HOH A 26 526 29 HOH HOH . J 9 HOH A 27 527 7 HOH HOH . J 9 HOH A 28 528 172 HOH HOH . J 9 HOH A 29 529 189 HOH HOH . J 9 HOH A 30 530 162 HOH HOH . J 9 HOH A 31 531 83 HOH HOH . J 9 HOH A 32 532 62 HOH HOH . J 9 HOH A 33 533 26 HOH HOH . J 9 HOH A 34 534 5 HOH HOH . J 9 HOH A 35 535 8 HOH HOH . J 9 HOH A 36 536 11 HOH HOH . J 9 HOH A 37 537 81 HOH HOH . J 9 HOH A 38 538 88 HOH HOH . J 9 HOH A 39 539 274 HOH HOH . J 9 HOH A 40 540 275 HOH HOH . J 9 HOH A 41 541 136 HOH HOH . J 9 HOH A 42 542 268 HOH HOH . J 9 HOH A 43 543 139 HOH HOH . J 9 HOH A 44 544 154 HOH HOH . J 9 HOH A 45 545 206 HOH HOH . J 9 HOH A 46 546 2 HOH HOH . J 9 HOH A 47 547 87 HOH HOH . J 9 HOH A 48 548 77 HOH HOH . J 9 HOH A 49 549 110 HOH HOH . J 9 HOH A 50 550 159 HOH HOH . J 9 HOH A 51 551 109 HOH HOH . J 9 HOH A 52 552 1 HOH HOH . J 9 HOH A 53 553 183 HOH HOH . J 9 HOH A 54 554 258 HOH HOH . J 9 HOH A 55 555 276 HOH HOH . J 9 HOH A 56 556 102 HOH HOH . J 9 HOH A 57 557 17 HOH HOH . J 9 HOH A 58 558 146 HOH HOH . J 9 HOH A 59 559 22 HOH HOH . J 9 HOH A 60 560 15 HOH HOH . J 9 HOH A 61 561 196 HOH HOH . J 9 HOH A 62 562 79 HOH HOH . J 9 HOH A 63 563 219 HOH HOH . J 9 HOH A 64 564 92 HOH HOH . J 9 HOH A 65 565 3 HOH HOH . J 9 HOH A 66 566 19 HOH HOH . J 9 HOH A 67 567 108 HOH HOH . J 9 HOH A 68 568 226 HOH HOH . J 9 HOH A 69 569 57 HOH HOH . J 9 HOH A 70 570 65 HOH HOH . J 9 HOH A 71 571 122 HOH HOH . J 9 HOH A 72 572 192 HOH HOH . J 9 HOH A 73 573 68 HOH HOH . J 9 HOH A 74 574 13 HOH HOH . J 9 HOH A 75 575 38 HOH HOH . J 9 HOH A 76 576 46 HOH HOH . J 9 HOH A 77 577 71 HOH HOH . J 9 HOH A 78 578 281 HOH HOH . J 9 HOH A 79 579 173 HOH HOH . J 9 HOH A 80 580 24 HOH HOH . J 9 HOH A 81 581 86 HOH HOH . J 9 HOH A 82 582 227 HOH HOH . J 9 HOH A 83 583 59 HOH HOH . J 9 HOH A 84 584 41 HOH HOH . J 9 HOH A 85 585 33 HOH HOH . J 9 HOH A 86 586 9 HOH HOH . J 9 HOH A 87 587 221 HOH HOH . J 9 HOH A 88 588 193 HOH HOH . J 9 HOH A 89 589 48 HOH HOH . J 9 HOH A 90 590 95 HOH HOH . J 9 HOH A 91 591 202 HOH HOH . J 9 HOH A 92 592 280 HOH HOH . J 9 HOH A 93 593 44 HOH HOH . J 9 HOH A 94 594 266 HOH HOH . J 9 HOH A 95 595 224 HOH HOH . J 9 HOH A 96 596 164 HOH HOH . J 9 HOH A 97 597 166 HOH HOH . J 9 HOH A 98 598 98 HOH HOH . J 9 HOH A 99 599 74 HOH HOH . J 9 HOH A 100 600 205 HOH HOH . J 9 HOH A 101 601 135 HOH HOH . J 9 HOH A 102 602 284 HOH HOH . J 9 HOH A 103 603 118 HOH HOH . J 9 HOH A 104 604 126 HOH HOH . J 9 HOH A 105 605 283 HOH HOH . J 9 HOH A 106 606 168 HOH HOH . J 9 HOH A 107 607 260 HOH HOH . J 9 HOH A 108 608 234 HOH HOH . J 9 HOH A 109 609 123 HOH HOH . J 9 HOH A 110 610 222 HOH HOH . J 9 HOH A 111 611 143 HOH HOH . J 9 HOH A 112 612 152 HOH HOH . J 9 HOH A 113 613 96 HOH HOH . J 9 HOH A 114 614 178 HOH HOH . J 9 HOH A 115 615 119 HOH HOH . J 9 HOH A 116 616 215 HOH HOH . J 9 HOH A 117 617 282 HOH HOH . J 9 HOH A 118 618 185 HOH HOH . J 9 HOH A 119 619 131 HOH HOH . J 9 HOH A 120 620 217 HOH HOH . J 9 HOH A 121 621 58 HOH HOH . J 9 HOH A 122 622 191 HOH HOH . J 9 HOH A 123 623 259 HOH HOH . J 9 HOH A 124 624 229 HOH HOH . J 9 HOH A 125 625 223 HOH HOH . J 9 HOH A 126 626 245 HOH HOH . J 9 HOH A 127 627 156 HOH HOH . J 9 HOH A 128 628 262 HOH HOH . K 9 HOH B 1 501 176 HOH HOH . K 9 HOH B 2 502 208 HOH HOH . K 9 HOH B 3 503 204 HOH HOH . K 9 HOH B 4 504 150 HOH HOH . K 9 HOH B 5 505 188 HOH HOH . K 9 HOH B 6 506 31 HOH HOH . K 9 HOH B 7 507 90 HOH HOH . K 9 HOH B 8 508 263 HOH HOH . K 9 HOH B 9 509 105 HOH HOH . K 9 HOH B 10 510 182 HOH HOH . K 9 HOH B 11 511 56 HOH HOH . K 9 HOH B 12 512 4 HOH HOH . K 9 HOH B 13 513 50 HOH HOH . K 9 HOH B 14 514 12 HOH HOH . K 9 HOH B 15 515 47 HOH HOH . K 9 HOH B 16 516 55 HOH HOH . K 9 HOH B 17 517 99 HOH HOH . K 9 HOH B 18 518 157 HOH HOH . K 9 HOH B 19 519 104 HOH HOH . K 9 HOH B 20 520 121 HOH HOH . K 9 HOH B 21 521 177 HOH HOH . K 9 HOH B 22 522 43 HOH HOH . K 9 HOH B 23 523 85 HOH HOH . K 9 HOH B 24 524 53 HOH HOH . K 9 HOH B 25 525 27 HOH HOH . K 9 HOH B 26 526 115 HOH HOH . K 9 HOH B 27 527 30 HOH HOH . K 9 HOH B 28 528 91 HOH HOH . K 9 HOH B 29 529 195 HOH HOH . K 9 HOH B 30 530 116 HOH HOH . K 9 HOH B 31 531 145 HOH HOH . K 9 HOH B 32 532 257 HOH HOH . K 9 HOH B 33 533 161 HOH HOH . K 9 HOH B 34 534 130 HOH HOH . K 9 HOH B 35 535 149 HOH HOH . K 9 HOH B 36 536 216 HOH HOH . K 9 HOH B 37 537 256 HOH HOH . K 9 HOH B 38 538 277 HOH HOH . K 9 HOH B 39 539 107 HOH HOH . K 9 HOH B 40 540 36 HOH HOH . K 9 HOH B 41 541 37 HOH HOH . K 9 HOH B 42 542 197 HOH HOH . K 9 HOH B 43 543 190 HOH HOH . K 9 HOH B 44 544 203 HOH HOH . K 9 HOH B 45 545 113 HOH HOH . K 9 HOH B 46 546 128 HOH HOH . K 9 HOH B 47 547 106 HOH HOH . K 9 HOH B 48 548 70 HOH HOH . K 9 HOH B 49 549 14 HOH HOH . K 9 HOH B 50 550 218 HOH HOH . K 9 HOH B 51 551 100 HOH HOH . K 9 HOH B 52 552 209 HOH HOH . K 9 HOH B 53 553 201 HOH HOH . K 9 HOH B 54 554 179 HOH HOH . K 9 HOH B 55 555 132 HOH HOH . K 9 HOH B 56 556 18 HOH HOH . K 9 HOH B 57 557 198 HOH HOH . K 9 HOH B 58 558 212 HOH HOH . K 9 HOH B 59 559 175 HOH HOH . K 9 HOH B 60 560 25 HOH HOH . K 9 HOH B 61 561 144 HOH HOH . K 9 HOH B 62 562 6 HOH HOH . K 9 HOH B 63 563 289 HOH HOH . K 9 HOH B 64 564 42 HOH HOH . K 9 HOH B 65 565 141 HOH HOH . K 9 HOH B 66 566 250 HOH HOH . K 9 HOH B 67 567 133 HOH HOH . K 9 HOH B 68 568 148 HOH HOH . K 9 HOH B 69 569 114 HOH HOH . K 9 HOH B 70 570 210 HOH HOH . K 9 HOH B 71 571 211 HOH HOH . K 9 HOH B 72 572 200 HOH HOH . K 9 HOH B 73 573 129 HOH HOH . K 9 HOH B 74 574 165 HOH HOH . K 9 HOH B 75 575 32 HOH HOH . K 9 HOH B 76 576 142 HOH HOH . K 9 HOH B 77 577 89 HOH HOH . K 9 HOH B 78 578 94 HOH HOH . K 9 HOH B 79 579 163 HOH HOH . K 9 HOH B 80 580 285 HOH HOH . K 9 HOH B 81 581 72 HOH HOH . K 9 HOH B 82 582 186 HOH HOH . K 9 HOH B 83 583 63 HOH HOH . K 9 HOH B 84 584 60 HOH HOH . K 9 HOH B 85 585 66 HOH HOH . K 9 HOH B 86 586 54 HOH HOH . K 9 HOH B 87 587 111 HOH HOH . K 9 HOH B 88 588 35 HOH HOH . K 9 HOH B 89 589 84 HOH HOH . K 9 HOH B 90 590 170 HOH HOH . K 9 HOH B 91 591 103 HOH HOH . K 9 HOH B 92 592 171 HOH HOH . K 9 HOH B 93 593 73 HOH HOH . K 9 HOH B 94 594 167 HOH HOH . K 9 HOH B 95 595 45 HOH HOH . K 9 HOH B 96 596 279 HOH HOH . K 9 HOH B 97 597 273 HOH HOH . K 9 HOH B 98 598 169 HOH HOH . K 9 HOH B 99 599 69 HOH HOH . K 9 HOH B 100 600 61 HOH HOH . K 9 HOH B 101 601 184 HOH HOH . K 9 HOH B 102 602 265 HOH HOH . K 9 HOH B 103 603 160 HOH HOH . K 9 HOH B 104 604 214 HOH HOH . K 9 HOH B 105 605 67 HOH HOH . K 9 HOH B 106 606 158 HOH HOH . K 9 HOH B 107 607 52 HOH HOH . K 9 HOH B 108 608 28 HOH HOH . K 9 HOH B 109 609 254 HOH HOH . K 9 HOH B 110 610 187 HOH HOH . K 9 HOH B 111 611 138 HOH HOH . K 9 HOH B 112 612 271 HOH HOH . K 9 HOH B 113 613 112 HOH HOH . K 9 HOH B 114 614 199 HOH HOH . K 9 HOH B 115 615 207 HOH HOH . K 9 HOH B 116 616 255 HOH HOH . K 9 HOH B 117 617 194 HOH HOH . K 9 HOH B 118 618 213 HOH HOH . K 9 HOH B 119 619 286 HOH HOH . K 9 HOH B 120 620 278 HOH HOH . K 9 HOH B 121 621 127 HOH HOH . K 9 HOH B 122 622 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . H 8 24.017 -7.797 25.315 1 24.21 ? C1 SIN 402 B 1 HETATM 2 O O1 SIN . . . H 8 24.403 -8.47 26.247 1 29.19 ? O1 SIN 402 B 1 HETATM 3 O O2 SIN . . . H 8 24.741 -6.859 24.758 1 28.69 ? O2 SIN 402 B 1 HETATM 4 C C2 SIN . . . H 8 22.654 -7.967 24.708 1 24.73 ? C2 SIN 402 B 1 HETATM 5 C C3 SIN . . . H 8 22.247 -6.845 23.767 1 22.47 ? C3 SIN 402 B 1 HETATM 6 C C4 SIN . . . H 8 20.766 -6.796 23.515 1 25.94 ? C4 SIN 402 B 1 HETATM 7 O O3 SIN . . . H 8 19.948 -6.802 24.408 1 29.12 ? O3 SIN 402 B 1 HETATM 8 O O4 SIN . . . H 8 20.443 -6.743 22.251 1 25.93 ? O4 SIN 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #