data_5CAP # _model_server_result.job_id Ofq0ntQgRJOlM09jcNgy4Q _model_server_result.datetime_utc '2024-11-22 11:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 5CAP # _exptl.entry_id 5CAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.513 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-N-[2-(2-methyl-2-methylsulfonyl-propoxy)pyrimidin-4-yl]-1-propan-2-yl-imidazo[4,5-c]pyridin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CAP _cell.length_a 149.007 _cell.length_b 149.007 _cell.length_c 149.007 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H26 N6 O3 S' _chem_comp.formula_weight 418.513 _chem_comp.id 4ZH _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-N-[2-(2-methyl-2-methylsulfonyl-propoxy)pyrimidin-4-yl]-1-propan-2-yl-imidazo[4,5-c]pyridin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 S26 4ZH doub 1 n n O28 S26 4ZH doub 2 n n S26 C29 4ZH sing 3 n n S26 C23 4ZH sing 4 n n C25 C23 4ZH sing 5 n n N18 C17 4ZH doub 6 n y N18 C19 4ZH sing 7 n y C17 C16 4ZH sing 8 n y C23 C22 4ZH sing 9 n n C23 C24 4ZH sing 10 n n C22 O21 4ZH sing 11 n n O21 C19 4ZH sing 12 n n C19 N20 4ZH doub 13 n y C16 C15 4ZH doub 14 n y N20 C15 4ZH sing 15 n y C15 N14 4ZH sing 16 n n N14 C7 4ZH sing 17 n n C7 C8 4ZH doub 18 n y C7 N6 4ZH sing 19 n y C8 C9 4ZH sing 20 n y C13 C11 4ZH sing 21 n n C11 C12 4ZH sing 22 n n C11 N10 4ZH sing 23 n n N6 C5 4ZH doub 24 n y C9 N10 4ZH sing 25 n y C9 C4 4ZH doub 26 n y N10 C2 4ZH sing 27 n y C5 C4 4ZH sing 28 n y C4 N3 4ZH sing 29 n y C2 N3 4ZH doub 30 n y C2 C1 4ZH sing 31 n n C5 H1 4ZH sing 32 n n C11 H2 4ZH sing 33 n n C8 H3 4ZH sing 34 n n C12 H4 4ZH sing 35 n n C12 H5 4ZH sing 36 n n C12 H6 4ZH sing 37 n n C13 H7 4ZH sing 38 n n C13 H8 4ZH sing 39 n n C13 H9 4ZH sing 40 n n C1 H10 4ZH sing 41 n n C1 H11 4ZH sing 42 n n C1 H12 4ZH sing 43 n n N14 H13 4ZH sing 44 n n C16 H14 4ZH sing 45 n n C17 H15 4ZH sing 46 n n C22 H16 4ZH sing 47 n n C22 H17 4ZH sing 48 n n C24 H18 4ZH sing 49 n n C24 H19 4ZH sing 50 n n C24 H20 4ZH sing 51 n n C25 H21 4ZH sing 52 n n C25 H22 4ZH sing 53 n n C25 H23 4ZH sing 54 n n C29 H24 4ZH sing 55 n n C29 H25 4ZH sing 56 n n C29 H26 4ZH sing 57 n n # _atom_sites.entry_id 5CAP _atom_sites.fract_transf_matrix[1][1] 0.006711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1101 1 SO4 SO4 . C 2 SO4 A 1 1102 2 SO4 SO4 . D 3 4ZH A 1 1103 1 4ZH DRG . E 4 HOH A 1 1201 19 HOH HOH . E 4 HOH A 2 1202 4 HOH HOH . E 4 HOH A 3 1203 18 HOH HOH . E 4 HOH A 4 1204 11 HOH HOH . E 4 HOH A 5 1205 29 HOH HOH . E 4 HOH A 6 1206 5 HOH HOH . E 4 HOH A 7 1207 13 HOH HOH . E 4 HOH A 8 1208 2 HOH HOH . E 4 HOH A 9 1209 23 HOH HOH . E 4 HOH A 10 1210 10 HOH HOH . E 4 HOH A 11 1211 1 HOH HOH . E 4 HOH A 12 1212 17 HOH HOH . E 4 HOH A 13 1213 7 HOH HOH . E 4 HOH A 14 1214 30 HOH HOH . E 4 HOH A 15 1215 16 HOH HOH . E 4 HOH A 16 1216 20 HOH HOH . E 4 HOH A 17 1217 35 HOH HOH . E 4 HOH A 18 1218 6 HOH HOH . E 4 HOH A 19 1219 3 HOH HOH . E 4 HOH A 20 1220 27 HOH HOH . E 4 HOH A 21 1221 22 HOH HOH . E 4 HOH A 22 1222 8 HOH HOH . E 4 HOH A 23 1223 9 HOH HOH . E 4 HOH A 24 1224 42 HOH HOH . E 4 HOH A 25 1225 14 HOH HOH . E 4 HOH A 26 1226 44 HOH HOH . E 4 HOH A 27 1227 36 HOH HOH . E 4 HOH A 28 1228 15 HOH HOH . E 4 HOH A 29 1229 31 HOH HOH . E 4 HOH A 30 1230 38 HOH HOH . E 4 HOH A 31 1231 24 HOH HOH . E 4 HOH A 32 1232 37 HOH HOH . E 4 HOH A 33 1233 25 HOH HOH . E 4 HOH A 34 1234 12 HOH HOH . E 4 HOH A 35 1235 21 HOH HOH . E 4 HOH A 36 1236 26 HOH HOH . E 4 HOH A 37 1237 41 HOH HOH . E 4 HOH A 38 1238 34 HOH HOH . E 4 HOH A 39 1239 39 HOH HOH . E 4 HOH A 40 1240 43 HOH HOH . E 4 HOH A 41 1241 40 HOH HOH . E 4 HOH A 42 1242 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4ZH . . . D 3 -54.269 1.393 -21.015 1 60.84 ? C4 4ZH 1103 A 1 HETATM 2 C C5 4ZH . . . D 3 -55.237 2.387 -21.228 1 58.27 ? C5 4ZH 1103 A 1 HETATM 3 C C11 4ZH . . . D 3 -52.258 -1.276 -22.491 1 58.84 ? C11 4ZH 1103 A 1 HETATM 4 C C7 4ZH . . . D 3 -55.483 1.798 -23.48 1 56.76 ? C7 4ZH 1103 A 1 HETATM 5 C C8 4ZH . . . D 3 -54.494 0.809 -23.35 1 58.19 ? C8 4ZH 1103 A 1 HETATM 6 C C9 4ZH . . . D 3 -53.887 0.584 -22.108 1 60.46 ? C9 4ZH 1103 A 1 HETATM 7 C C12 4ZH . . . D 3 -52.697 -2.729 -22.36 1 55.9 ? C12 4ZH 1103 A 1 HETATM 8 C C13 4ZH . . . D 3 -50.816 -0.972 -22.906 1 57.86 ? C13 4ZH 1103 A 1 HETATM 9 N N3 4ZH . . . D 3 -53.54 0.972 -19.947 1 62.47 ? N3 4ZH 1103 A 1 HETATM 10 C C1 4ZH . . . D 3 -51.803 -0.669 -19.307 1 63.54 ? C1 4ZH 1103 A 1 HETATM 11 C C2 4ZH . . . D 3 -52.75 -0.006 -20.289 1 63.07 ? C2 4ZH 1103 A 1 HETATM 12 N N6 4ZH . . . D 3 -55.798 2.548 -22.419 1 56.43 ? N6 4ZH 1103 A 1 HETATM 13 N N10 4ZH . . . D 3 -52.932 -0.292 -21.626 1 62.01 ? N10 4ZH 1103 A 1 HETATM 14 N N14 4ZH . . . D 3 -56.143 2.063 -24.705 1 54.08 ? N14 4ZH 1103 A 1 HETATM 15 C C15 4ZH . . . D 3 -56.16 1.208 -25.797 1 52.34 ? C15 4ZH 1103 A 1 HETATM 16 C C16 4ZH . . . D 3 -57.213 1.16 -26.744 1 51.99 ? C16 4ZH 1103 A 1 HETATM 17 C C17 4ZH . . . D 3 -57.107 0.209 -27.775 1 53.13 ? C17 4ZH 1103 A 1 HETATM 18 N N18 4ZH . . . D 3 -56.025 -0.606 -27.856 1 52.96 ? N18 4ZH 1103 A 1 HETATM 19 C C19 4ZH . . . D 3 -55.079 -0.533 -26.917 1 56.33 ? C19 4ZH 1103 A 1 HETATM 20 N N20 4ZH . . . D 3 -55.137 0.375 -25.949 1 55.39 ? N20 4ZH 1103 A 1 HETATM 21 O O21 4ZH . . . D 3 -53.914 -1.209 -26.94 1 60.93 ? O21 4ZH 1103 A 1 HETATM 22 C C22 4ZH . . . D 3 -53.785 -2.597 -27.158 1 64 ? C22 4ZH 1103 A 1 HETATM 23 C C23 4ZH . . . D 3 -52.344 -2.872 -27.579 1 68 ? C23 4ZH 1103 A 1 HETATM 24 C C24 4ZH . . . D 3 -51.379 -2.798 -26.389 1 69.03 ? C24 4ZH 1103 A 1 HETATM 25 C C25 4ZH . . . D 3 -52.407 -4.334 -28.024 1 69.68 ? C25 4ZH 1103 A 1 HETATM 26 S S26 4ZH . . . D 3 -51.784 -1.755 -28.928 1 69.11 ? S26 4ZH 1103 A 1 HETATM 27 O O27 4ZH . . . D 3 -52.829 -1.552 -29.871 1 73.4 ? O27 4ZH 1103 A 1 HETATM 28 O O28 4ZH . . . D 3 -50.555 -2.25 -29.416 1 72.11 ? O28 4ZH 1103 A 1 HETATM 29 C C29 4ZH . . . D 3 -51.492 -0.13 -28.222 1 68.32 ? C29 4ZH 1103 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 57 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #