data_5CB0 # _model_server_result.job_id H6nZZcrJtxJH8UFvJhzXiQ _model_server_result.datetime_utc '2025-06-28 05:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5CB0 # _exptl.entry_id 5CB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-oxotetradecanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CB0 _cell.length_a 121.134 _cell.length_b 121.134 _cell.length_c 241.745 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H26 O3' _chem_comp.formula_weight 242.354 _chem_comp.id Z6X _chem_comp.mon_nstd_flag . _chem_comp.name '3-oxotetradecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 Z6X sing 374 n n C1 H11 Z6X sing 375 n n C1 H12 Z6X sing 376 n n C1 H13 Z6X sing 377 n n C2 C3 Z6X sing 378 n n C2 H21 Z6X sing 379 n n C2 H22 Z6X sing 380 n n C3 C4 Z6X sing 381 n n C3 H31 Z6X sing 382 n n C3 H32 Z6X sing 383 n n C4 C5 Z6X sing 384 n n C4 H41 Z6X sing 385 n n C4 H42 Z6X sing 386 n n C5 C6 Z6X sing 387 n n C5 H51 Z6X sing 388 n n C5 H52 Z6X sing 389 n n C6 C7 Z6X sing 390 n n C6 H61 Z6X sing 391 n n C6 H62 Z6X sing 392 n n C7 C8 Z6X sing 393 n n C7 H71 Z6X sing 394 n n C7 H72 Z6X sing 395 n n C8 C9 Z6X sing 396 n n C8 H81 Z6X sing 397 n n C8 H82 Z6X sing 398 n n C9 C10 Z6X sing 399 n n C9 H91 Z6X sing 400 n n C9 H92 Z6X sing 401 n n C10 C11 Z6X sing 402 n n C10 H101 Z6X sing 403 n n C10 H102 Z6X sing 404 n n C11 C12 Z6X sing 405 n n C11 H111 Z6X sing 406 n n C11 H112 Z6X sing 407 n n C12 C13 Z6X sing 408 n n C12 O1 Z6X doub 409 n n C13 C14 Z6X sing 410 n n C13 H131 Z6X sing 411 n n C13 H132 Z6X sing 412 n n C14 O3 Z6X sing 413 n n C14 O2 Z6X doub 414 n n O3 H3O Z6X sing 415 n n # _atom_sites.entry_id 5CB0 _atom_sites.fract_transf_matrix[1][1] 0.008255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Z6X A 1 401 401 Z6X U20 . D 2 Z6X B 1 401 401 Z6X U20 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Z6X . . . C 2 42.094 7.15 36.169 1 86.78 ? C1 Z6X 401 A 1 HETATM 2 C C2 Z6X . . . C 2 41.831 8.282 35.201 1 83.79 ? C2 Z6X 401 A 1 HETATM 3 C C3 Z6X . . . C 2 43 8.549 34.28 1 88.79 ? C3 Z6X 401 A 1 HETATM 4 C C4 Z6X . . . C 2 42.613 9.365 33.067 1 79.81 ? C4 Z6X 401 A 1 HETATM 5 C C5 Z6X . . . C 2 42.067 10.731 33.422 1 99.3 ? C5 Z6X 401 A 1 HETATM 6 C C6 Z6X . . . C 2 41.275 11.364 32.298 1 86.94 ? C6 Z6X 401 A 1 HETATM 7 C C7 Z6X . . . C 2 41.754 12.755 31.947 1 93.25 ? C7 Z6X 401 A 1 HETATM 8 C C8 Z6X . . . C 2 40.617 13.69 31.597 1 77.28 ? C8 Z6X 401 A 1 HETATM 9 C C9 Z6X . . . C 2 41.098 15.045 31.127 1 94.78 ? C9 Z6X 401 A 1 HETATM 10 C C10 Z6X . . . C 2 39.978 16.054 31.019 1 83.88 ? C10 Z6X 401 A 1 HETATM 11 C C11 Z6X . . . C 2 40.367 17.275 30.216 1 82.34 ? C11 Z6X 401 A 1 HETATM 12 C C12 Z6X . . . C 2 39.245 18.282 30.122 1 97.55 ? C12 Z6X 401 A 1 HETATM 13 O O1 Z6X . . . C 2 39.251 19.431 30.931 1 103.24 ? O1 Z6X 401 A 1 HETATM 14 C C13 Z6X . . . C 2 38.114 18.04 29.15 1 87.81 ? C13 Z6X 401 A 1 HETATM 15 C C14 Z6X . . . C 2 38.071 19.077 28.052 1 93.41 ? C14 Z6X 401 A 1 HETATM 16 O O2 Z6X . . . C 2 37.118 19.082 27.232 1 77.28 ? O2 Z6X 401 A 1 HETATM 17 O O3 Z6X . . . C 2 38.99 19.933 27.963 1 108.57 ? O3 Z6X 401 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #