data_5CB0
#
_model_server_result.job_id            vWgMc14sbdLfEIUBGXiiVQ 
_model_server_result.datetime_utc      '2025-06-28 02:07:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cb0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5CB0 
#
_exptl.entry_id    5CB0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.354 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-oxotetradecanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CB0 
_cell.length_a            121.134 
_cell.length_b            121.134 
_cell.length_c            241.745 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CB0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H26 O3' 
_chem_comp.formula_weight    242.354 
_chem_comp.id                Z6X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-oxotetradecanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 Z6X sing 374 n n 
C1 H11 Z6X sing 375 n n 
C1 H12 Z6X sing 376 n n 
C1 H13 Z6X sing 377 n n 
C2 C3 Z6X sing 378 n n 
C2 H21 Z6X sing 379 n n 
C2 H22 Z6X sing 380 n n 
C3 C4 Z6X sing 381 n n 
C3 H31 Z6X sing 382 n n 
C3 H32 Z6X sing 383 n n 
C4 C5 Z6X sing 384 n n 
C4 H41 Z6X sing 385 n n 
C4 H42 Z6X sing 386 n n 
C5 C6 Z6X sing 387 n n 
C5 H51 Z6X sing 388 n n 
C5 H52 Z6X sing 389 n n 
C6 C7 Z6X sing 390 n n 
C6 H61 Z6X sing 391 n n 
C6 H62 Z6X sing 392 n n 
C7 C8 Z6X sing 393 n n 
C7 H71 Z6X sing 394 n n 
C7 H72 Z6X sing 395 n n 
C8 C9 Z6X sing 396 n n 
C8 H81 Z6X sing 397 n n 
C8 H82 Z6X sing 398 n n 
C9 C10 Z6X sing 399 n n 
C9 H91 Z6X sing 400 n n 
C9 H92 Z6X sing 401 n n 
C10 C11 Z6X sing 402 n n 
C10 H101 Z6X sing 403 n n 
C10 H102 Z6X sing 404 n n 
C11 C12 Z6X sing 405 n n 
C11 H111 Z6X sing 406 n n 
C11 H112 Z6X sing 407 n n 
C12 C13 Z6X sing 408 n n 
C12 O1 Z6X doub 409 n n 
C13 C14 Z6X sing 410 n n 
C13 H131 Z6X sing 411 n n 
C13 H132 Z6X sing 412 n n 
C14 O3 Z6X sing 413 n n 
C14 O2 Z6X doub 414 n n 
O3 H3O Z6X sing 415 n n 
#
_atom_sites.entry_id                     5CB0 
_atom_sites.fract_transf_matrix[1][1]    0.008255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004137 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Z6X A 1 401 401 Z6X U20 . 
D 2 Z6X B 1 401 401 Z6X U20 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Z6X . . . D 2 5.763 22.282 60.936 1 61.98 ? C1 Z6X 401 B 1 
HETATM 2 C C2 Z6X . . . D 2 6.738 22.916 61.905 1 78.07 ? C2 Z6X 401 B 1 
HETATM 3 C C3 Z6X . . . D 2 6.373 24.34 62.259 1 67.2 ? C3 Z6X 401 B 1 
HETATM 4 C C4 Z6X . . . D 2 6.793 24.703 63.664 1 75.69 ? C4 Z6X 401 B 1 
HETATM 5 C C5 Z6X . . . D 2 7.783 25.845 63.718 1 75.05 ? C5 Z6X 401 B 1 
HETATM 6 C C6 Z6X . . . D 2 9.076 25.472 64.41 1 74.76 ? C6 Z6X 401 B 1 
HETATM 7 C C7 Z6X . . . D 2 9.817 26.682 64.933 1 82.89 ? C7 Z6X 401 B 1 
HETATM 8 C C8 Z6X . . . D 2 11.273 26.417 65.25 1 71.6 ? C8 Z6X 401 B 1 
HETATM 9 C C9 Z6X . . . D 2 12.076 27.699 65.248 1 82.95 ? C9 Z6X 401 B 1 
HETATM 10 C C10 Z6X . . . D 2 13.412 27.59 65.945 1 109.61 ? C10 Z6X 401 B 1 
HETATM 11 C C11 Z6X . . . D 2 13.696 28.797 66.811 1 73.75 ? C11 Z6X 401 B 1 
HETATM 12 C C12 Z6X . . . D 2 15.172 29.03 67.038 1 84.45 ? C12 Z6X 401 B 1 
HETATM 13 O O1 Z6X . . . D 2 15.908 29.812 66.134 1 90.04 ? O1 Z6X 401 B 1 
HETATM 14 C C13 Z6X . . . D 2 15.862 28.421 68.236 1 91.82 ? C13 Z6X 401 B 1 
HETATM 15 C C14 Z6X . . . D 2 17.159 27.743 67.856 1 75.45 ? C14 Z6X 401 B 1 
HETATM 16 O O2 Z6X . . . D 2 17.175 26.507 67.619 1 87.71 ? O2 Z6X 401 B 1 
HETATM 17 O O3 Z6X . . . D 2 18.219 28.417 67.773 1 75.3 ? O3 Z6X 401 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#