data_5CB6
#
_model_server_result.job_id            BL8cHdzqf4iJYbjycpFkEw 
_model_server_result.datetime_utc      '2024-11-16 19:35:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":303}' 
#
_entry.id    5CB6 
#
_exptl.entry_id    5CB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.72 
_cell.angle_gamma         90 
_cell.entry_id            5CB6 
_cell.length_a            136.904 
_cell.length_b            109.681 
_cell.length_c            100.807 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,I,J,R,S,T,U,BA,EA 1 1 
B,F,K,L,M,Y,Z,AA,CA,GA 2 1 
C,N,O,P,Q,DA 3 1 
C,N,O,P,Q,DA 3 2 
E,V,W,X,FA 4 1 
E,V,W,X,FA 4 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -136.904 0 0 
3 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 1.266745 0 -100.799041 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 M N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 39 A THR 19 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc2 A OD2 ASP 62 A ASP 42 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc3 A O THR 173 A THR 153 1_555 J NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc4 A O GLU 176 A GLU 156 1_555 J NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc5 H O2G ANP . A ANP 302 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? 
metalc ? metalc6 I MG MG . A MG 303 1_555 BA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc7 J NA NA . A NA 304 1_555 B O THR 173 B THR 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc8 J NA NA . A NA 304 1_555 B O GLU 176 B GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc9 B OG1 THR 39 B THR 19 1_555 M MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc10 L O2G ANP . B ANP 302 1_555 M MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc11 M MG MG . B MG 303 1_555 CA O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc12 C OG1 THR 39 C THR 19 1_555 P MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc13 C OD2 ASP 60 C ASP 40 1_555 P MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? 
metalc ? metalc14 O O2G ANP . C ANP 302 1_555 P MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc15 O O3G ANP . C ANP 302 1_555 P MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? 
metalc ? metalc16 D OG1 THR 39 D THR 19 1_555 T MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc17 D OD2 ASP 62 D ASP 42 1_555 T MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc18 S O1G ANP . D ANP 302 1_555 T MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc19 S O2G ANP . D ANP 302 1_555 T MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc20 E OG1 THR 39 E THR 19 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
metalc ? metalc21 E OD2 ASP 62 E ASP 42 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc22 W O2G ANP . E ANP 302 1_555 X MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? 
metalc ? metalc23 X MG MG . E MG 303 1_555 FA O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc24 F OG1 THR 39 F THR 19 1_555 AA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc25 F OD2 ASP 62 F ASP 42 1_555 AA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc26 Z O2G ANP . F ANP 302 1_555 AA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc27 Z O1B ANP . F ANP 302 1_555 AA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc28 AA MG MG . F MG 303 1_555 GA O HOH . F HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5CB6 
_atom_sites.fract_transf_matrix[1][1]    0.007304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000092 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADX A 1 301 301 ADX ADX . 
H 3 ANP A 1 302 302 ANP ANP . 
I 4 MG A 1 303 303 MG MG . 
J 5 NA A 1 304 304 NA NA . 
K 2 ADX B 1 301 301 ADX ADX . 
L 3 ANP B 1 302 302 ANP ANP . 
M 4 MG B 1 303 303 MG MG . 
N 2 ADX C 1 301 301 ADX ADX . 
O 3 ANP C 1 302 302 ANP ANP . 
P 4 MG C 1 303 303 MG MG . 
Q 6 CAC C 1 304 304 CAC CAC . 
R 2 ADX D 1 301 301 ADX ADX . 
S 3 ANP D 1 302 302 ANP ANP . 
T 4 MG D 1 303 303 MG MG . 
U 6 CAC D 1 304 304 CAC CAC . 
V 2 ADX E 1 301 301 ADX ADX . 
W 3 ANP E 1 302 302 ANP ANP . 
X 4 MG E 1 303 303 MG MG . 
Y 2 ADX F 1 301 301 ADX ADX . 
Z 3 ANP F 1 302 302 ANP ANP . 
AA 4 MG F 1 303 303 MG MG . 
BA 7 HOH A 1 401 401 HOH HOH . 
BA 7 HOH A 2 402 402 HOH HOH . 
BA 7 HOH A 3 403 403 HOH HOH . 
BA 7 HOH A 4 404 404 HOH HOH . 
BA 7 HOH A 5 405 405 HOH HOH . 
BA 7 HOH A 6 406 406 HOH HOH . 
BA 7 HOH A 7 407 407 HOH HOH . 
BA 7 HOH A 8 408 408 HOH HOH . 
BA 7 HOH A 9 409 409 HOH HOH . 
BA 7 HOH A 10 410 410 HOH HOH . 
BA 7 HOH A 11 411 411 HOH HOH . 
BA 7 HOH A 12 412 412 HOH HOH . 
BA 7 HOH A 13 413 413 HOH HOH . 
BA 7 HOH A 14 414 414 HOH HOH . 
BA 7 HOH A 15 415 415 HOH HOH . 
BA 7 HOH A 16 416 416 HOH HOH . 
BA 7 HOH A 17 417 417 HOH HOH . 
BA 7 HOH A 18 418 418 HOH HOH . 
BA 7 HOH A 19 419 419 HOH HOH . 
BA 7 HOH A 20 420 420 HOH HOH . 
BA 7 HOH A 21 421 421 HOH HOH . 
BA 7 HOH A 22 422 422 HOH HOH . 
BA 7 HOH A 23 423 423 HOH HOH . 
BA 7 HOH A 24 424 424 HOH HOH . 
BA 7 HOH A 25 425 425 HOH HOH . 
BA 7 HOH A 26 426 426 HOH HOH . 
CA 7 HOH B 1 401 402 HOH HOH . 
CA 7 HOH B 2 402 401 HOH HOH . 
CA 7 HOH B 3 403 403 HOH HOH . 
CA 7 HOH B 4 404 404 HOH HOH . 
CA 7 HOH B 5 405 405 HOH HOH . 
CA 7 HOH B 6 406 406 HOH HOH . 
CA 7 HOH B 7 407 407 HOH HOH . 
CA 7 HOH B 8 408 408 HOH HOH . 
CA 7 HOH B 9 409 409 HOH HOH . 
CA 7 HOH B 10 410 410 HOH HOH . 
CA 7 HOH B 11 411 411 HOH HOH . 
CA 7 HOH B 12 412 412 HOH HOH . 
CA 7 HOH B 13 413 413 HOH HOH . 
CA 7 HOH B 14 414 414 HOH HOH . 
DA 7 HOH C 1 401 401 HOH HOH . 
DA 7 HOH C 2 402 402 HOH HOH . 
DA 7 HOH C 3 403 403 HOH HOH . 
DA 7 HOH C 4 404 404 HOH HOH . 
DA 7 HOH C 5 405 405 HOH HOH . 
DA 7 HOH C 6 406 406 HOH HOH . 
DA 7 HOH C 7 407 407 HOH HOH . 
DA 7 HOH C 8 408 408 HOH HOH . 
DA 7 HOH C 9 409 409 HOH HOH . 
DA 7 HOH C 10 410 410 HOH HOH . 
DA 7 HOH C 11 411 411 HOH HOH . 
DA 7 HOH C 12 412 412 HOH HOH . 
DA 7 HOH C 13 413 413 HOH HOH . 
DA 7 HOH C 14 414 414 HOH HOH . 
DA 7 HOH C 15 415 415 HOH HOH . 
DA 7 HOH C 16 416 416 HOH HOH . 
DA 7 HOH C 17 417 417 HOH HOH . 
EA 7 HOH D 1 401 401 HOH HOH . 
EA 7 HOH D 2 402 402 HOH HOH . 
EA 7 HOH D 3 403 403 HOH HOH . 
EA 7 HOH D 4 404 404 HOH HOH . 
EA 7 HOH D 5 405 405 HOH HOH . 
EA 7 HOH D 6 406 406 HOH HOH . 
EA 7 HOH D 7 407 407 HOH HOH . 
EA 7 HOH D 8 408 408 HOH HOH . 
EA 7 HOH D 9 409 409 HOH HOH . 
EA 7 HOH D 10 410 410 HOH HOH . 
EA 7 HOH D 11 411 411 HOH HOH . 
FA 7 HOH E 1 401 401 HOH HOH . 
FA 7 HOH E 2 402 402 HOH HOH . 
FA 7 HOH E 3 403 403 HOH HOH . 
FA 7 HOH E 4 404 404 HOH HOH . 
FA 7 HOH E 5 405 405 HOH HOH . 
FA 7 HOH E 6 406 406 HOH HOH . 
FA 7 HOH E 7 407 407 HOH HOH . 
FA 7 HOH E 8 408 408 HOH HOH . 
GA 7 HOH F 1 401 401 HOH HOH . 
GA 7 HOH F 2 402 402 HOH HOH . 
GA 7 HOH F 3 403 403 HOH HOH . 
GA 7 HOH F 4 404 404 HOH HOH . 
GA 7 HOH F 5 405 405 HOH HOH . 
GA 7 HOH F 6 406 406 HOH HOH . 
GA 7 HOH F 7 407 407 HOH HOH . 
GA 7 HOH F 8 408 408 HOH HOH . 
GA 7 HOH F 9 409 409 HOH HOH . 
GA 7 HOH F 10 410 410 HOH HOH . 
GA 7 HOH F 11 411 411 HOH HOH . 
GA 7 HOH F 12 412 412 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         AA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -60.05 
_atom_site.Cartn_y               22.691 
_atom_site.Cartn_z               19.981 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#