data_5CBG
#
_model_server_result.job_id            1qM-Xo9Gd2N1PAxoIb1FfA 
_model_server_result.datetime_utc      '2024-11-05 02:13:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cbg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    5CBG 
#
_exptl.entry_id    5CBG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.562 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            DECYL-BETA-D-MALTOPYRANOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CBG 
_cell.length_a            115.573 
_cell.length_b            115.573 
_cell.length_c            127.487 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CBG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,G,H,J,K,L,M,R,S,U,V 1 1 
C,I,T 2 1,2,3,4 
F,N,O,P,Q,W 3 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_795 -x+2,-y+4,z -1 0 0 0 -1 0 0 0 1 231.146 462.292 0 
3 'crystal symmetry operation' 3_865 -y+3,x+1,z 0 -1 0 1 0 0 0 0 1 346.719 115.573 0 
4 'crystal symmetry operation' 4_485 y-1,-x+3,z 0 1 0 -1 0 0 0 0 1 -115.573 346.719 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 59 A SER 59 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc2 A O LEU 62 A LEU 62 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc3 G CA CA . A CA 201 1_555 E O PRO 63 E PRO 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc4 B O PRO 63 B PRO 63 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? 
metalc ? metalc5 H CA CA . B CA 201 1_555 D O SER 59 D SER 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc6 H CA CA . B CA 201 1_555 D O LEU 62 D LEU 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc7 E OD1 ASN 66 E ASN 66 1_555 K CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc8 F O SER 59 F SER 59 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc9 F O LEU 62 F LEU 62 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc10 F O PRO 63 F PRO 63 1_555 O CA CA . F CA 202 4_485 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
#
_chem_comp.formula           'C22 H42 O11' 
_chem_comp.formula_weight    482.562 
_chem_comp.id                DMU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECYL-BETA-D-MALTOPYRANOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     DECYLMALTOSIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C40 C37 DMU sing 70 n n 
C40 C43 DMU sing 71 n n 
C37 C34 DMU sing 72 n n 
C34 C31 DMU sing 73 n n 
C31 C28 DMU sing 74 n n 
C28 C25 DMU sing 75 n n 
C22 C25 DMU sing 76 n n 
C22 C19 DMU sing 77 n n 
O61 C57 DMU sing 78 n n 
O4 C7 DMU sing 79 n n 
C18 C19 DMU sing 80 n n 
C18 O16 DMU sing 81 n n 
O5 C6 DMU sing 82 n n 
O5 C4 DMU sing 83 n n 
C57 C4 DMU sing 84 n n 
C6 O16 DMU sing 85 n n 
C6 C1 DMU sing 86 n n 
C7 C5 DMU sing 87 n n 
C7 C8 DMU sing 88 n n 
C4 C3 DMU sing 89 n n 
O1 C10 DMU sing 90 n n 
O1 C9 DMU sing 91 n n 
C10 C5 DMU sing 92 n n 
C10 O7 DMU sing 93 n n 
C5 O3 DMU sing 94 n n 
O49 C1 DMU sing 95 n n 
C8 C9 DMU sing 96 n n 
C8 O2 DMU sing 97 n n 
C1 C2 DMU sing 98 n n 
C11 C9 DMU sing 99 n n 
C11 O6 DMU sing 100 n n 
C3 O7 DMU sing 101 n n 
C3 C2 DMU sing 102 n n 
C2 O55 DMU sing 103 n n 
C1 H1 DMU sing 104 n n 
C2 H2 DMU sing 105 n n 
C3 H3 DMU sing 106 n n 
C4 H4 DMU sing 107 n n 
C6 H5 DMU sing 108 n n 
C18 H6 DMU sing 109 n n 
C18 H7 DMU sing 110 n n 
C19 H8 DMU sing 111 n n 
C19 H9 DMU sing 112 n n 
C22 H10 DMU sing 113 n n 
C22 H11 DMU sing 114 n n 
C25 H12 DMU sing 115 n n 
C25 H13 DMU sing 116 n n 
C28 H14 DMU sing 117 n n 
C28 H15 DMU sing 118 n n 
C31 H16 DMU sing 119 n n 
C31 H17 DMU sing 120 n n 
C34 H18 DMU sing 121 n n 
C34 H19 DMU sing 122 n n 
C37 H20 DMU sing 123 n n 
C37 H21 DMU sing 124 n n 
C40 H22 DMU sing 125 n n 
C40 H23 DMU sing 126 n n 
C43 H24 DMU sing 127 n n 
C43 H25 DMU sing 128 n n 
C43 H26 DMU sing 129 n n 
O49 H27 DMU sing 130 n n 
O55 H28 DMU sing 131 n n 
C57 H29 DMU sing 132 n n 
C57 H30 DMU sing 133 n n 
O61 H31 DMU sing 134 n n 
C5 H32 DMU sing 135 n n 
C7 H33 DMU sing 136 n n 
C8 H34 DMU sing 137 n n 
C9 H35 DMU sing 138 n n 
C10 H36 DMU sing 139 n n 
O2 H37 DMU sing 140 n n 
O3 H38 DMU sing 141 n n 
O4 H39 DMU sing 142 n n 
C11 H40 DMU sing 143 n n 
C11 H41 DMU sing 144 n n 
O6 H42 DMU sing 145 n n 
#
_atom_sites.entry_id                     5CBG 
_atom_sites.fract_transf_matrix[1][1]    0.008653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008653 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CA A 1 201 201 CA CA . 
H 2 CA B 1 201 204 CA CA . 
I 2 CA C 1 201 202 CA CA . 
J 3 DMU D 1 201 201 DMU DMU . 
K 2 CA E 1 201 201 CA CA . 
L 3 DMU E 1 202 202 DMU DMU . 
M 3 DMU E 1 203 203 DMU DMU . 
N 2 CA F 1 201 202 CA CA . 
O 2 CA F 1 202 203 CA CA . 
P 2 CA F 1 203 205 CA CA . 
Q 2 CA F 1 204 206 CA CA . 
R 4 HOH A 1 301 301 HOH HOH . 
R 4 HOH A 2 302 302 HOH HOH . 
R 4 HOH A 3 303 303 HOH HOH . 
R 4 HOH A 4 304 304 HOH HOH . 
R 4 HOH A 5 305 305 HOH HOH . 
R 4 HOH A 6 306 306 HOH HOH . 
S 4 HOH B 1 301 301 HOH HOH . 
S 4 HOH B 2 302 302 HOH HOH . 
S 4 HOH B 3 303 303 HOH HOH . 
S 4 HOH B 4 304 304 HOH HOH . 
S 4 HOH B 5 305 305 HOH HOH . 
S 4 HOH B 6 306 306 HOH HOH . 
S 4 HOH B 7 307 307 HOH HOH . 
S 4 HOH B 8 308 308 HOH HOH . 
S 4 HOH B 9 309 309 HOH HOH . 
S 4 HOH B 10 310 310 HOH HOH . 
S 4 HOH B 11 311 311 HOH HOH . 
T 4 HOH C 1 301 301 HOH HOH . 
T 4 HOH C 2 302 302 HOH HOH . 
T 4 HOH C 3 303 303 HOH HOH . 
T 4 HOH C 4 304 304 HOH HOH . 
T 4 HOH C 5 305 305 HOH HOH . 
T 4 HOH C 6 306 306 HOH HOH . 
T 4 HOH C 7 307 307 HOH HOH . 
U 4 HOH D 1 301 301 HOH HOH . 
U 4 HOH D 2 302 302 HOH HOH . 
U 4 HOH D 3 303 303 HOH HOH . 
U 4 HOH D 4 304 304 HOH HOH . 
V 4 HOH E 1 301 301 HOH HOH . 
V 4 HOH E 2 302 302 HOH HOH . 
V 4 HOH E 3 303 303 HOH HOH . 
V 4 HOH E 4 304 304 HOH HOH . 
W 4 HOH F 1 301 301 HOH HOH . 
W 4 HOH F 2 302 302 HOH HOH . 
W 4 HOH F 3 303 303 HOH HOH . 
W 4 HOH F 4 304 304 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DMU . . . J 3 90.752 174.606 -7.877 1 44.12 ? C1 DMU 201 D 1 
HETATM 2 C C2 DMU . . . J 3 90.212 176.011 -7.82 1 43.39 ? C2 DMU 201 D 1 
HETATM 3 C C3 DMU . . . J 3 90.474 176.67 -9.135 1 44.2 ? C3 DMU 201 D 1 
HETATM 4 C C4 DMU . . . J 3 89.754 175.919 -10.249 1 44.32 ? C4 DMU 201 D 1 
HETATM 5 O O5 DMU . . . J 3 89.969 174.515 -10.194 1 44.33 ? O5 DMU 201 D 1 
HETATM 6 C C6 DMU . . . J 3 90.039 173.854 -8.97 1 45.7 ? C6 DMU 201 D 1 
HETATM 7 O O7 DMU . . . J 3 90.074 178.032 -9.084 1 44.67 ? O7 DMU 201 D 1 
HETATM 8 O O16 DMU . . . J 3 90.351 172.491 -9.116 1 45.15 ? O16 DMU 201 D 1 
HETATM 9 C C18 DMU . . . J 3 89.564 171.489 -8.448 1 47.04 ? C18 DMU 201 D 1 
HETATM 10 C C19 DMU . . . J 3 90.396 170.865 -7.298 1 48.03 ? C19 DMU 201 D 1 
HETATM 11 C C22 DMU . . . J 3 89.528 170.053 -6.335 1 47.72 ? C22 DMU 201 D 1 
HETATM 12 C C25 DMU . . . J 3 90.29 169.863 -5.023 1 48.51 ? C25 DMU 201 D 1 
HETATM 13 C C28 DMU . . . J 3 89.31 169.567 -3.877 1 48.79 ? C28 DMU 201 D 1 
HETATM 14 C C31 DMU . . . J 3 88.541 168.259 -4.137 1 48.68 ? C31 DMU 201 D 1 
HETATM 15 C C34 DMU . . . J 3 87.541 167.97 -3.002 1 48.25 ? C34 DMU 201 D 1 
HETATM 16 C C37 DMU . . . J 3 88.126 166.974 -1.99 1 48.37 ? C37 DMU 201 D 1 
HETATM 17 C C40 DMU . . . J 3 87.065 165.943 -1.567 1 48.22 ? C40 DMU 201 D 1 
HETATM 18 C C43 DMU . . . J 3 87.613 165.129 -0.409 1 47.87 ? C43 DMU 201 D 1 
HETATM 19 O O49 DMU . . . J 3 90.542 173.991 -6.635 1 43.37 ? O49 DMU 201 D 1 
HETATM 20 O O55 DMU . . . J 3 90.817 176.76 -6.794 1 41.64 ? O55 DMU 201 D 1 
HETATM 21 C C57 DMU . . . J 3 90.199 176.429 -11.615 1 43.36 ? C57 DMU 201 D 1 
HETATM 22 O O61 DMU . . . J 3 91.222 177.398 -11.481 1 40.47 ? O61 DMU 201 D 1 
HETATM 23 C C5 DMU . . . J 3 88.119 179.11 -9.901 1 46.34 ? C5 DMU 201 D 1 
HETATM 24 C C7 DMU . . . J 3 87.308 180.297 -9.516 1 46.31 ? C7 DMU 201 D 1 
HETATM 25 C C8 DMU . . . J 3 86.847 180.174 -8.104 1 45.76 ? C8 DMU 201 D 1 
HETATM 26 C C9 DMU . . . J 3 88.064 179.938 -7.278 1 46.64 ? C9 DMU 201 D 1 
HETATM 27 O O1 DMU . . . J 3 88.474 178.622 -7.514 1 47.49 ? O1 DMU 201 D 1 
HETATM 28 C C10 DMU . . . J 3 88.679 178.194 -8.842 1 47.15 ? C10 DMU 201 D 1 
HETATM 29 O O2 DMU . . . J 3 86.297 181.387 -7.716 1 47.44 ? O2 DMU 201 D 1 
HETATM 30 O O3 DMU . . . J 3 89.008 179.424 -10.906 1 45.43 ? O3 DMU 201 D 1 
HETATM 31 O O4 DMU . . . J 3 86.181 180.352 -10.343 1 47.82 ? O4 DMU 201 D 1 
HETATM 32 C C11 DMU . . . J 3 87.728 180.103 -5.811 1 46.48 ? C11 DMU 201 D 1 
HETATM 33 O O6 DMU . . . J 3 86.35 179.898 -5.632 1 43.87 ? O6 DMU 201 D 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#