data_5CBG # _model_server_result.job_id 4eIR2O32zgtgYISY_nVgAA _model_server_result.datetime_utc '2024-11-05 02:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":204}' # _entry.id 5CBG # _exptl.entry_id 5CBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBG _cell.length_a 115.573 _cell.length_b 115.573 _cell.length_c 127.487 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H,J,K,L,M,R,S,U,V 1 1 C,I,T 2 1,2,3,4 F,N,O,P,Q,W 3 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_795 -x+2,-y+4,z -1 0 0 0 -1 0 0 0 1 231.146 462.292 0 3 'crystal symmetry operation' 3_865 -y+3,x+1,z 0 -1 0 1 0 0 0 0 1 346.719 115.573 0 4 'crystal symmetry operation' 4_485 y-1,-x+3,z 0 1 0 -1 0 0 0 0 1 -115.573 346.719 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 59 A SER 59 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 A O LEU 62 A LEU 62 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 G CA CA . A CA 201 1_555 E O PRO 63 E PRO 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 B O PRO 63 B PRO 63 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc5 H CA CA . B CA 201 1_555 D O SER 59 D SER 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 H CA CA . B CA 201 1_555 D O LEU 62 D LEU 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc7 E OD1 ASN 66 E ASN 66 1_555 K CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc8 F O SER 59 F SER 59 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc9 F O LEU 62 F LEU 62 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc10 F O PRO 63 F PRO 63 1_555 O CA CA . F CA 202 4_485 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CBG _atom_sites.fract_transf_matrix[1][1] 0.008653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CA A 1 201 201 CA CA . H 2 CA B 1 201 204 CA CA . I 2 CA C 1 201 202 CA CA . J 3 DMU D 1 201 201 DMU DMU . K 2 CA E 1 201 201 CA CA . L 3 DMU E 1 202 202 DMU DMU . M 3 DMU E 1 203 203 DMU DMU . N 2 CA F 1 201 202 CA CA . O 2 CA F 1 202 203 CA CA . P 2 CA F 1 203 205 CA CA . Q 2 CA F 1 204 206 CA CA . R 4 HOH A 1 301 301 HOH HOH . R 4 HOH A 2 302 302 HOH HOH . R 4 HOH A 3 303 303 HOH HOH . R 4 HOH A 4 304 304 HOH HOH . R 4 HOH A 5 305 305 HOH HOH . R 4 HOH A 6 306 306 HOH HOH . S 4 HOH B 1 301 301 HOH HOH . S 4 HOH B 2 302 302 HOH HOH . S 4 HOH B 3 303 303 HOH HOH . S 4 HOH B 4 304 304 HOH HOH . S 4 HOH B 5 305 305 HOH HOH . S 4 HOH B 6 306 306 HOH HOH . S 4 HOH B 7 307 307 HOH HOH . S 4 HOH B 8 308 308 HOH HOH . S 4 HOH B 9 309 309 HOH HOH . S 4 HOH B 10 310 310 HOH HOH . S 4 HOH B 11 311 311 HOH HOH . T 4 HOH C 1 301 301 HOH HOH . T 4 HOH C 2 302 302 HOH HOH . T 4 HOH C 3 303 303 HOH HOH . T 4 HOH C 4 304 304 HOH HOH . T 4 HOH C 5 305 305 HOH HOH . T 4 HOH C 6 306 306 HOH HOH . T 4 HOH C 7 307 307 HOH HOH . U 4 HOH D 1 301 301 HOH HOH . U 4 HOH D 2 302 302 HOH HOH . U 4 HOH D 3 303 303 HOH HOH . U 4 HOH D 4 304 304 HOH HOH . V 4 HOH E 1 301 301 HOH HOH . V 4 HOH E 2 302 302 HOH HOH . V 4 HOH E 3 303 303 HOH HOH . V 4 HOH E 4 304 304 HOH HOH . W 4 HOH F 1 301 301 HOH HOH . W 4 HOH F 2 302 302 HOH HOH . W 4 HOH F 3 303 303 HOH HOH . W 4 HOH F 4 304 304 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 2 _atom_site.Cartn_x 126.699 _atom_site.Cartn_y 228.678 _atom_site.Cartn_z -28.778 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #