data_5CBN
#
_model_server_result.job_id            i_pM9L-Dnh2Y5Mz-itG1aA 
_model_server_result.datetime_utc      '2024-10-15 12:18:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1301}' 
#
_entry.id    5CBN 
#
_exptl.entry_id    5CBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.348 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2,2'-ethyne-1,2-diylbis{5-[(chloroacetyl)amino]benzenesulfonic acid}" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CBN 
_cell.length_a            64.282 
_cell.length_b            75.827 
_cell.length_c            111.352 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 122 A CYS 133 1_555 C C03 EYC . A EYC 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale2 B SG CYS 133 A CYS 1226 1_555 C C19 EYC . A EYC 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
#
_chem_comp.formula           'C18 H14 Cl2 N2 O8 S2' 
_chem_comp.formula_weight    521.348 
_chem_comp.id                EYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2,2'-ethyne-1,2-diylbis{5-[(chloroacetyl)amino]benzenesulfonic acid}" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C17 EYC sing 83 n n 
O18 C17 EYC doub 84 n n 
C17 N16 EYC sing 85 n n 
N16 C15 EYC sing 86 n n 
C14 C15 EYC doub 87 n y 
C14 C13 EYC sing 88 n y 
C15 C21 EYC sing 89 n y 
C13 C12 EYC doub 90 n y 
O30 S28 EYC doub 91 n n 
C21 C22 EYC doub 92 n y 
C12 C22 EYC sing 93 n y 
C12 C11 EYC sing 94 n n 
O31 S28 EYC doub 95 n n 
O29 S28 EYC sing 96 n n 
S28 C27 EYC sing 97 n n 
C22 S23 EYC sing 98 n n 
C11 C10 EYC trip 99 n n 
C10 C09 EYC sing 100 n n 
C27 C09 EYC doub 101 n y 
C27 C32 EYC sing 102 n y 
C09 C08 EYC sing 103 n y 
S23 O24 EYC doub 104 n n 
S23 O26 EYC doub 105 n n 
S23 O25 EYC sing 106 n n 
C32 C06 EYC doub 107 n y 
C08 C07 EYC doub 108 n y 
C06 C07 EYC sing 109 n y 
C06 N05 EYC sing 110 n n 
N05 C02 EYC sing 111 n n 
C02 O01 EYC doub 112 n n 
C02 C03 EYC sing 113 n n 
C03 H1 EYC sing 114 n n 
C03 H2 EYC sing 115 n n 
N05 H4 EYC sing 116 n n 
C07 H5 EYC sing 117 n n 
C08 H6 EYC sing 118 n n 
C32 H7 EYC sing 119 n n 
C13 H8 EYC sing 120 n n 
C14 H9 EYC sing 121 n n 
N16 H10 EYC sing 122 n n 
C19 H11 EYC sing 123 n n 
C19 H12 EYC sing 124 n n 
C21 H14 EYC sing 125 n n 
C19 CL1 EYC sing 126 n n 
C03 CL2 EYC sing 127 n n 
O29 H3 EYC sing 128 n n 
O25 H13 EYC sing 129 n n 
#
_atom_sites.entry_id                     5CBN 
_atom_sites.fract_transf_matrix[1][1]    0.015556 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EYC A 1 1301 1 EYC EYC . 
D 4 HOH B 1 401 61 HOH HOH . 
D 4 HOH B 2 402 85 HOH HOH . 
D 4 HOH B 3 403 84 HOH HOH . 
D 4 HOH B 4 404 2 HOH HOH . 
D 4 HOH B 5 405 96 HOH HOH . 
D 4 HOH B 6 406 33 HOH HOH . 
D 4 HOH B 7 407 42 HOH HOH . 
D 4 HOH B 8 408 89 HOH HOH . 
D 4 HOH B 9 409 14 HOH HOH . 
D 4 HOH B 10 410 72 HOH HOH . 
D 4 HOH B 11 411 41 HOH HOH . 
D 4 HOH B 12 412 80 HOH HOH . 
D 4 HOH B 13 413 46 HOH HOH . 
D 4 HOH B 14 414 17 HOH HOH . 
D 4 HOH B 15 415 36 HOH HOH . 
D 4 HOH B 16 416 54 HOH HOH . 
D 4 HOH B 17 417 13 HOH HOH . 
D 4 HOH B 18 418 87 HOH HOH . 
D 4 HOH B 19 419 43 HOH HOH . 
D 4 HOH B 20 420 65 HOH HOH . 
D 4 HOH B 21 421 73 HOH HOH . 
D 4 HOH B 22 422 52 HOH HOH . 
D 4 HOH B 23 423 105 HOH HOH . 
D 4 HOH B 24 424 9 HOH HOH . 
D 4 HOH B 25 425 19 HOH HOH . 
D 4 HOH B 26 426 29 HOH HOH . 
D 4 HOH B 27 427 57 HOH HOH . 
D 4 HOH B 28 428 8 HOH HOH . 
D 4 HOH B 29 429 40 HOH HOH . 
D 4 HOH B 30 430 49 HOH HOH . 
D 4 HOH B 31 431 108 HOH HOH . 
D 4 HOH B 32 432 79 HOH HOH . 
D 4 HOH B 33 433 6 HOH HOH . 
D 4 HOH B 34 434 106 HOH HOH . 
D 4 HOH B 35 435 59 HOH HOH . 
D 4 HOH B 36 436 39 HOH HOH . 
D 4 HOH B 37 437 12 HOH HOH . 
D 4 HOH B 38 438 11 HOH HOH . 
D 4 HOH B 39 439 113 HOH HOH . 
D 4 HOH B 40 440 21 HOH HOH . 
D 4 HOH B 41 441 27 HOH HOH . 
D 4 HOH B 42 442 58 HOH HOH . 
D 4 HOH B 43 443 25 HOH HOH . 
D 4 HOH B 44 444 7 HOH HOH . 
D 4 HOH B 45 445 103 HOH HOH . 
D 4 HOH B 46 446 101 HOH HOH . 
D 4 HOH B 47 447 64 HOH HOH . 
D 4 HOH B 48 448 75 HOH HOH . 
D 4 HOH B 49 449 20 HOH HOH . 
D 4 HOH B 50 450 76 HOH HOH . 
D 4 HOH B 51 451 81 HOH HOH . 
D 4 HOH B 52 452 45 HOH HOH . 
D 4 HOH B 53 453 97 HOH HOH . 
D 4 HOH B 54 454 83 HOH HOH . 
D 4 HOH B 55 455 82 HOH HOH . 
D 4 HOH B 56 456 56 HOH HOH . 
D 4 HOH B 57 457 100 HOH HOH . 
D 4 HOH B 58 458 112 HOH HOH . 
D 4 HOH B 59 459 31 HOH HOH . 
D 4 HOH B 60 460 70 HOH HOH . 
D 4 HOH B 61 461 94 HOH HOH . 
D 4 HOH B 62 462 35 HOH HOH . 
D 4 HOH B 63 463 99 HOH HOH . 
D 4 HOH B 64 464 86 HOH HOH . 
D 4 HOH B 65 465 38 HOH HOH . 
D 4 HOH B 66 466 104 HOH HOH . 
D 4 HOH B 67 467 62 HOH HOH . 
D 4 HOH B 68 468 37 HOH HOH . 
D 4 HOH B 69 469 98 HOH HOH . 
D 4 HOH B 70 470 102 HOH HOH . 
D 4 HOH B 71 471 71 HOH HOH . 
D 4 HOH B 72 472 60 HOH HOH . 
D 4 HOH B 73 473 67 HOH HOH . 
D 4 HOH B 74 474 92 HOH HOH . 
E 4 HOH A 1 1401 26 HOH HOH . 
E 4 HOH A 2 1402 47 HOH HOH . 
E 4 HOH A 3 1403 91 HOH HOH . 
E 4 HOH A 4 1404 48 HOH HOH . 
E 4 HOH A 5 1405 51 HOH HOH . 
E 4 HOH A 6 1406 110 HOH HOH . 
E 4 HOH A 7 1407 1 HOH HOH . 
E 4 HOH A 8 1408 10 HOH HOH . 
E 4 HOH A 9 1409 24 HOH HOH . 
E 4 HOH A 10 1410 50 HOH HOH . 
E 4 HOH A 11 1411 34 HOH HOH . 
E 4 HOH A 12 1412 4 HOH HOH . 
E 4 HOH A 13 1413 88 HOH HOH . 
E 4 HOH A 14 1414 63 HOH HOH . 
E 4 HOH A 15 1415 23 HOH HOH . 
E 4 HOH A 16 1416 90 HOH HOH . 
E 4 HOH A 17 1417 28 HOH HOH . 
E 4 HOH A 18 1418 3 HOH HOH . 
E 4 HOH A 19 1419 44 HOH HOH . 
E 4 HOH A 20 1420 32 HOH HOH . 
E 4 HOH A 21 1421 30 HOH HOH . 
E 4 HOH A 22 1422 5 HOH HOH . 
E 4 HOH A 23 1423 78 HOH HOH . 
E 4 HOH A 24 1424 95 HOH HOH . 
E 4 HOH A 25 1425 111 HOH HOH . 
E 4 HOH A 26 1426 16 HOH HOH . 
E 4 HOH A 27 1427 93 HOH HOH . 
E 4 HOH A 28 1428 69 HOH HOH . 
E 4 HOH A 29 1429 66 HOH HOH . 
E 4 HOH A 30 1430 77 HOH HOH . 
E 4 HOH A 31 1431 22 HOH HOH . 
E 4 HOH A 32 1432 68 HOH HOH . 
E 4 HOH A 33 1433 18 HOH HOH . 
E 4 HOH A 34 1434 15 HOH HOH . 
E 4 HOH A 35 1435 55 HOH HOH . 
E 4 HOH A 36 1436 53 HOH HOH . 
E 4 HOH A 37 1437 109 HOH HOH . 
E 4 HOH A 38 1438 74 HOH HOH . 
E 4 HOH A 39 1439 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 EYC . . . C 3 -0.451 -14.344 -35.118 1 28.66 ? O01 EYC 1301 A 1 
HETATM 2 C C02 EYC . . . C 3 -1.393 -14.89 -35.594 1 34.4 ? C02 EYC 1301 A 1 
HETATM 3 C C03 EYC . . . C 3 -2.797 -14.629 -35.042 1 29.91 ? C03 EYC 1301 A 1 
HETATM 4 N N05 EYC . . . C 3 -1.384 -15.393 -36.951 1 26.84 ? N05 EYC 1301 A 1 
HETATM 5 C C06 EYC . . . C 3 -0.215 -15.709 -37.736 1 27.61 ? C06 EYC 1301 A 1 
HETATM 6 C C07 EYC . . . C 3 1.101 -15.541 -37.274 1 25.48 ? C07 EYC 1301 A 1 
HETATM 7 C C08 EYC . . . C 3 2.164 -15.877 -38.11 1 28.74 ? C08 EYC 1301 A 1 
HETATM 8 C C09 EYC . . . C 3 1.909 -16.379 -39.389 1 30.01 ? C09 EYC 1301 A 1 
HETATM 9 C C10 EYC . . . C 3 3.086 -16.748 -40.287 1 38.82 ? C10 EYC 1301 A 1 
HETATM 10 C C27 EYC . . . C 3 0.59 -16.541 -39.826 1 32.21 ? C27 EYC 1301 A 1 
HETATM 11 S S28 EYC . . . C 3 0.214 -17.282 -41.427 1 40.09 ? S28 EYC 1301 A 1 
HETATM 12 O O29 EYC . . . C 3 0.915 -18.579 -41.45 1 34.58 ? O29 EYC 1301 A 1 
HETATM 13 O O30 EYC . . . C 3 0.669 -16.375 -42.477 1 33.78 ? O30 EYC 1301 A 1 
HETATM 14 O O31 EYC . . . C 3 -1.418 -17.547 -41.525 1 76.13 ? O31 EYC 1301 A 1 
HETATM 15 C C32 EYC . . . C 3 -0.473 -16.206 -39.008 1 23.37 ? C32 EYC 1301 A 1 
HETATM 16 C C11 EYC . . . C 3 4.066 -16.942 -40.911 1 31.99 ? C11 EYC 1301 A 1 
HETATM 17 C C12 EYC . . . C 3 5.399 -17.046 -41.632 1 27.84 ? C12 EYC 1301 A 1 
HETATM 18 C C13 EYC . . . C 3 5.471 -16.514 -42.916 1 32.48 ? C13 EYC 1301 A 1 
HETATM 19 C C14 EYC . . . C 3 6.683 -16.542 -43.602 1 37.37 ? C14 EYC 1301 A 1 
HETATM 20 C C15 EYC . . . C 3 7.813 -17.109 -43.008 1 37.6 ? C15 EYC 1301 A 1 
HETATM 21 N N16 EYC . . . C 3 9.071 -17.088 -43.713 1 42.29 ? N16 EYC 1301 A 1 
HETATM 22 C C17 EYC . . . C 3 9.139 -17.439 -45.11 1 44.16 ? C17 EYC 1301 A 1 
HETATM 23 O O18 EYC . . . C 3 8.207 -17.922 -45.67 1 42.33 ? O18 EYC 1301 A 1 
HETATM 24 C C19 EYC . . . C 3 10.458 -17.192 -45.83 1 41.59 ? C19 EYC 1301 A 1 
HETATM 25 C C21 EYC . . . C 3 7.748 -17.634 -41.721 1 32.88 ? C21 EYC 1301 A 1 
HETATM 26 C C22 EYC . . . C 3 6.54 -17.605 -41.041 1 30.24 ? C22 EYC 1301 A 1 
HETATM 27 S S23 EYC . . . C 3 6.521 -18.292 -39.368 1 31.47 ? S23 EYC 1301 A 1 
HETATM 28 O O24 EYC . . . C 3 5.384 -19.215 -39.258 1 35.41 ? O24 EYC 1301 A 1 
HETATM 29 O O25 EYC . . . C 3 6.332 -17.182 -38.432 1 42.03 ? O25 EYC 1301 A 1 
HETATM 30 O O26 EYC . . . C 3 7.963 -19.031 -39.11 1 44.13 ? O26 EYC 1301 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#