data_5CBR # _model_server_result.job_id l61U06FqLYi0fBElZjtuZw _model_server_result.datetime_utc '2025-01-10 20:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5CBR # _exptl.entry_id 5CBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBR _cell.length_a 60.13 _cell.length_b 95.78 _cell.length_c 49.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 203 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 261 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 258 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 169 n n C1 C2 GOL sing 170 n n C1 H11 GOL sing 171 n n C1 H12 GOL sing 172 n n O1 HO1 GOL sing 173 n n C2 O2 GOL sing 174 n n C2 C3 GOL sing 175 n n C2 H2 GOL sing 176 n n O2 HO2 GOL sing 177 n n C3 O3 GOL sing 178 n n C3 H31 GOL sing 179 n n C3 H32 GOL sing 180 n n O3 HO3 GOL sing 181 n n # _atom_sites.entry_id 5CBR _atom_sites.fract_transf_matrix[1][1] 0.016631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4ZK A 1 301 1 4ZK LIG . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 3 GOL A 1 304 3 GOL GOL . F 4 SO4 A 1 305 1 SO4 SO4 . G 4 SO4 A 1 306 2 SO4 SO4 . H 4 SO4 A 1 307 3 SO4 SO4 . I 4 SO4 A 1 308 4 SO4 SO4 . J 4 SO4 A 1 309 5 SO4 SO4 . K 4 SO4 A 1 310 7 SO4 SO4 . L 5 ACT A 1 311 1 ACT ACT . M 6 HOH A 1 401 320 HOH HOH . M 6 HOH A 2 402 326 HOH HOH . M 6 HOH A 3 403 356 HOH HOH . M 6 HOH A 4 404 334 HOH HOH . M 6 HOH A 5 405 339 HOH HOH . M 6 HOH A 6 406 147 HOH HOH . M 6 HOH A 7 407 308 HOH HOH . M 6 HOH A 8 408 288 HOH HOH . M 6 HOH A 9 409 323 HOH HOH . M 6 HOH A 10 410 205 HOH HOH . M 6 HOH A 11 411 13 HOH HOH . M 6 HOH A 12 412 347 HOH HOH . M 6 HOH A 13 413 186 HOH HOH . M 6 HOH A 14 414 307 HOH HOH . M 6 HOH A 15 415 55 HOH HOH . M 6 HOH A 16 416 329 HOH HOH . M 6 HOH A 17 417 63 HOH HOH . M 6 HOH A 18 418 168 HOH HOH . M 6 HOH A 19 419 354 HOH HOH . M 6 HOH A 20 420 50 HOH HOH . M 6 HOH A 21 421 148 HOH HOH . M 6 HOH A 22 422 15 HOH HOH . M 6 HOH A 23 423 318 HOH HOH . M 6 HOH A 24 424 201 HOH HOH . M 6 HOH A 25 425 120 HOH HOH . M 6 HOH A 26 426 150 HOH HOH . M 6 HOH A 27 427 138 HOH HOH . M 6 HOH A 28 428 286 HOH HOH . M 6 HOH A 29 429 46 HOH HOH . M 6 HOH A 30 430 111 HOH HOH . M 6 HOH A 31 431 297 HOH HOH . M 6 HOH A 32 432 313 HOH HOH . M 6 HOH A 33 433 133 HOH HOH . M 6 HOH A 34 434 177 HOH HOH . M 6 HOH A 35 435 1 HOH HOH . M 6 HOH A 36 436 110 HOH HOH . M 6 HOH A 37 437 332 HOH HOH . M 6 HOH A 38 438 284 HOH HOH . M 6 HOH A 39 439 14 HOH HOH . M 6 HOH A 40 440 4 HOH HOH . M 6 HOH A 41 441 200 HOH HOH . M 6 HOH A 42 442 262 HOH HOH . M 6 HOH A 43 443 352 HOH HOH . M 6 HOH A 44 444 279 HOH HOH . M 6 HOH A 45 445 271 HOH HOH . M 6 HOH A 46 446 99 HOH HOH . M 6 HOH A 47 447 193 HOH HOH . M 6 HOH A 48 448 131 HOH HOH . M 6 HOH A 49 449 61 HOH HOH . M 6 HOH A 50 450 11 HOH HOH . M 6 HOH A 51 451 241 HOH HOH . M 6 HOH A 52 452 319 HOH HOH . M 6 HOH A 53 453 282 HOH HOH . M 6 HOH A 54 454 85 HOH HOH . M 6 HOH A 55 455 62 HOH HOH . M 6 HOH A 56 456 7 HOH HOH . M 6 HOH A 57 457 34 HOH HOH . M 6 HOH A 58 458 80 HOH HOH . M 6 HOH A 59 459 338 HOH HOH . M 6 HOH A 60 460 242 HOH HOH . M 6 HOH A 61 461 299 HOH HOH . M 6 HOH A 62 462 82 HOH HOH . M 6 HOH A 63 463 290 HOH HOH . M 6 HOH A 64 464 70 HOH HOH . M 6 HOH A 65 465 263 HOH HOH . M 6 HOH A 66 466 86 HOH HOH . M 6 HOH A 67 467 280 HOH HOH . M 6 HOH A 68 468 98 HOH HOH . M 6 HOH A 69 469 134 HOH HOH . M 6 HOH A 70 470 303 HOH HOH . M 6 HOH A 71 471 90 HOH HOH . M 6 HOH A 72 472 75 HOH HOH . M 6 HOH A 73 473 231 HOH HOH . M 6 HOH A 74 474 152 HOH HOH . M 6 HOH A 75 475 325 HOH HOH . M 6 HOH A 76 476 39 HOH HOH . M 6 HOH A 77 477 233 HOH HOH . M 6 HOH A 78 478 175 HOH HOH . M 6 HOH A 79 479 137 HOH HOH . M 6 HOH A 80 480 101 HOH HOH . M 6 HOH A 81 481 12 HOH HOH . M 6 HOH A 82 482 83 HOH HOH . M 6 HOH A 83 483 357 HOH HOH . M 6 HOH A 84 484 232 HOH HOH . M 6 HOH A 85 485 324 HOH HOH . M 6 HOH A 86 486 312 HOH HOH . M 6 HOH A 87 487 322 HOH HOH . M 6 HOH A 88 488 348 HOH HOH . M 6 HOH A 89 489 351 HOH HOH . M 6 HOH A 90 490 194 HOH HOH . M 6 HOH A 91 491 321 HOH HOH . M 6 HOH A 92 492 294 HOH HOH . M 6 HOH A 93 493 95 HOH HOH . M 6 HOH A 94 494 298 HOH HOH . M 6 HOH A 95 495 116 HOH HOH . M 6 HOH A 96 496 250 HOH HOH . M 6 HOH A 97 497 129 HOH HOH . M 6 HOH A 98 498 163 HOH HOH . M 6 HOH A 99 499 128 HOH HOH . M 6 HOH A 100 500 302 HOH HOH . M 6 HOH A 101 501 135 HOH HOH . M 6 HOH A 102 502 333 HOH HOH . M 6 HOH A 103 503 240 HOH HOH . M 6 HOH A 104 504 311 HOH HOH . M 6 HOH A 105 505 287 HOH HOH . M 6 HOH A 106 506 151 HOH HOH . M 6 HOH A 107 507 285 HOH HOH . M 6 HOH A 108 508 317 HOH HOH . M 6 HOH A 109 509 19 HOH HOH . M 6 HOH A 110 510 335 HOH HOH . M 6 HOH A 111 511 248 HOH HOH . M 6 HOH A 112 512 293 HOH HOH . M 6 HOH A 113 513 355 HOH HOH . M 6 HOH A 114 514 309 HOH HOH . M 6 HOH A 115 515 269 HOH HOH . M 6 HOH A 116 516 278 HOH HOH . M 6 HOH A 117 517 5 HOH HOH . M 6 HOH A 118 518 238 HOH HOH . M 6 HOH A 119 519 337 HOH HOH . M 6 HOH A 120 520 345 HOH HOH . M 6 HOH A 121 521 167 HOH HOH . M 6 HOH A 122 522 350 HOH HOH . M 6 HOH A 123 523 343 HOH HOH . M 6 HOH A 124 524 272 HOH HOH . M 6 HOH A 125 525 349 HOH HOH . M 6 HOH A 126 526 353 HOH HOH . M 6 HOH A 127 527 122 HOH HOH . M 6 HOH A 128 528 276 HOH HOH . M 6 HOH A 129 529 256 HOH HOH . M 6 HOH A 130 530 260 HOH HOH . M 6 HOH A 131 531 115 HOH HOH . M 6 HOH A 132 532 91 HOH HOH . M 6 HOH A 133 533 49 HOH HOH . M 6 HOH A 134 534 199 HOH HOH . M 6 HOH A 135 535 342 HOH HOH . M 6 HOH A 136 536 143 HOH HOH . M 6 HOH A 137 537 261 HOH HOH . M 6 HOH A 138 538 136 HOH HOH . M 6 HOH A 139 539 225 HOH HOH . M 6 HOH A 140 540 277 HOH HOH . M 6 HOH A 141 541 259 HOH HOH . M 6 HOH A 142 542 123 HOH HOH . M 6 HOH A 143 543 292 HOH HOH . M 6 HOH A 144 544 251 HOH HOH . M 6 HOH A 145 545 159 HOH HOH . M 6 HOH A 146 546 74 HOH HOH . M 6 HOH A 147 547 289 HOH HOH . M 6 HOH A 148 548 358 HOH HOH . M 6 HOH A 149 549 190 HOH HOH . M 6 HOH A 150 550 245 HOH HOH . M 6 HOH A 151 551 195 HOH HOH . M 6 HOH A 152 552 48 HOH HOH . M 6 HOH A 153 553 344 HOH HOH . M 6 HOH A 154 554 273 HOH HOH . M 6 HOH A 155 555 178 HOH HOH . M 6 HOH A 156 556 316 HOH HOH . M 6 HOH A 157 557 130 HOH HOH . M 6 HOH A 158 558 142 HOH HOH . M 6 HOH A 159 559 270 HOH HOH . M 6 HOH A 160 560 314 HOH HOH . M 6 HOH A 161 561 274 HOH HOH . M 6 HOH A 162 562 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 8.093 18.35 44.338 1 29.66 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 3 9.204 19.225 44.528 1 27.39 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 3 7.028 18.96 43.431 1 27.7 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 3 7.603 19.266 42.157 1 29.15 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 3 5.931 17.929 43.21 1 23.15 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 3 4.911 17.959 44.207 1 33.74 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #