data_5CBT # _model_server_result.job_id jOX1fIJxnqu3DH7mFsZYqQ _model_server_result.datetime_utc '2024-11-08 15:47:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5CBT # _exptl.entry_id 5CBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 236.267 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl N-(benzylcarbamoyl)glycinate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBT _cell.length_a 57.849 _cell.length_b 57.849 _cell.length_c 114.455 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 7 A TYR 7 1_555 D K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.28 ? metalc ? metalc2 A OD1 ASP 160 A ASP 160 1_555 D K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc3 A O CYS 161 A CYS 161 1_555 D K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 C K K . A K 202 1_555 H O4 PGE . A PGE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 C K K . A K 202 1_555 H O1 PGE . A PGE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc6 C K K . A K 202 1_555 H O2 PGE . A PGE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc7 C K K . A K 202 1_555 H O3 PGE . A PGE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc8 C K K . A K 202 1_555 H O1 PGE . A PGE 207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc9 C K K . A K 202 1_555 H O2 PGE . A PGE 207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc10 C K K . A K 202 1_555 H O3 PGE . A PGE 207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc11 C K K . A K 202 1_555 H O4 PGE . A PGE 207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc12 C K K . A K 202 1_555 I O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc13 C K K . A K 202 1_555 I O HOH . A HOH 389 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc14 D K K . A K 203 1_555 E O1 FMT . A FMT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc15 D K K . A K 203 1_555 I O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? # _chem_comp.formula 'C12 H16 N2 O3' _chem_comp.formula_weight 236.267 _chem_comp.id 4ZL _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl N-(benzylcarbamoyl)glycinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAO CAI 4ZL doub 1 n n CAG NAH 4ZL sing 2 n n CAG CAF 4ZL sing 3 n n CAI NAH 4ZL sing 4 n n CAI NAJ 4ZL sing 5 n n CAE CAF 4ZL doub 6 n y CAE CAD 4ZL sing 7 n y CAF CAA 4ZL sing 8 n y CAK NAJ 4ZL sing 9 n n CAK CAL 4ZL sing 10 n n CAD CAC 4ZL doub 11 n y OAM CAL 4ZL sing 12 n n OAM CAN 4ZL sing 13 n n CAL OAQ 4ZL doub 14 n n CAA CAB 4ZL doub 15 n y CAP CAN 4ZL sing 16 n n CAC CAB 4ZL sing 17 n y CAA H1 4ZL sing 18 n n CAB H2 4ZL sing 19 n n CAC H3 4ZL sing 20 n n CAD H4 4ZL sing 21 n n CAE H5 4ZL sing 22 n n CAG H6 4ZL sing 23 n n CAG H7 4ZL sing 24 n n NAH H8 4ZL sing 25 n n NAJ H9 4ZL sing 26 n n CAK H10 4ZL sing 27 n n CAK H11 4ZL sing 28 n n CAN H12 4ZL sing 29 n n CAN H13 4ZL sing 30 n n CAP H14 4ZL sing 31 n n CAP H15 4ZL sing 32 n n CAP H16 4ZL sing 33 n n # _atom_sites.entry_id 5CBT _atom_sites.fract_transf_matrix[1][1] 0.017286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4ZL A 1 201 1 4ZL EE2 . C 3 K A 1 202 1 K K . D 3 K A 1 203 2 K K . E 4 FMT A 1 204 1 FMT FMT . F 5 PG4 A 1 205 1 PG4 PG4 . G 6 EDO A 1 206 1 EDO EDO . H 7 PGE A 1 207 1 PGE PGE . I 8 HOH A 1 301 123 HOH HOH . I 8 HOH A 2 302 14 HOH HOH . I 8 HOH A 3 303 87 HOH HOH . I 8 HOH A 4 304 86 HOH HOH . I 8 HOH A 5 305 1 HOH HOH . I 8 HOH A 6 306 28 HOH HOH . I 8 HOH A 7 307 19 HOH HOH . I 8 HOH A 8 308 97 HOH HOH . I 8 HOH A 9 309 44 HOH HOH . I 8 HOH A 10 310 43 HOH HOH . I 8 HOH A 11 311 65 HOH HOH . I 8 HOH A 12 312 16 HOH HOH . I 8 HOH A 13 313 80 HOH HOH . I 8 HOH A 14 314 55 HOH HOH . I 8 HOH A 15 315 121 HOH HOH . I 8 HOH A 16 316 58 HOH HOH . I 8 HOH A 17 317 74 HOH HOH . I 8 HOH A 18 318 102 HOH HOH . I 8 HOH A 19 319 77 HOH HOH . I 8 HOH A 20 320 12 HOH HOH . I 8 HOH A 21 321 79 HOH HOH . I 8 HOH A 22 322 21 HOH HOH . I 8 HOH A 23 323 8 HOH HOH . I 8 HOH A 24 324 38 HOH HOH . I 8 HOH A 25 325 15 HOH HOH . I 8 HOH A 26 326 63 HOH HOH . I 8 HOH A 27 327 85 HOH HOH . I 8 HOH A 28 328 18 HOH HOH . I 8 HOH A 29 329 72 HOH HOH . I 8 HOH A 30 330 13 HOH HOH . I 8 HOH A 31 331 20 HOH HOH . I 8 HOH A 32 332 33 HOH HOH . I 8 HOH A 33 333 7 HOH HOH . I 8 HOH A 34 334 37 HOH HOH . I 8 HOH A 35 335 66 HOH HOH . I 8 HOH A 36 336 27 HOH HOH . I 8 HOH A 37 337 62 HOH HOH . I 8 HOH A 38 338 84 HOH HOH . I 8 HOH A 39 339 42 HOH HOH . I 8 HOH A 40 340 100 HOH HOH . I 8 HOH A 41 341 53 HOH HOH . I 8 HOH A 42 342 5 HOH HOH . I 8 HOH A 43 343 70 HOH HOH . I 8 HOH A 44 344 83 HOH HOH . I 8 HOH A 45 345 92 HOH HOH . I 8 HOH A 46 346 29 HOH HOH . I 8 HOH A 47 347 46 HOH HOH . I 8 HOH A 48 348 6 HOH HOH . I 8 HOH A 49 349 10 HOH HOH . I 8 HOH A 50 350 105 HOH HOH . I 8 HOH A 51 351 54 HOH HOH . I 8 HOH A 52 352 45 HOH HOH . I 8 HOH A 53 353 122 HOH HOH . I 8 HOH A 54 354 117 HOH HOH . I 8 HOH A 55 355 3 HOH HOH . I 8 HOH A 56 356 25 HOH HOH . I 8 HOH A 57 357 106 HOH HOH . I 8 HOH A 58 358 9 HOH HOH . I 8 HOH A 59 359 35 HOH HOH . I 8 HOH A 60 360 50 HOH HOH . I 8 HOH A 61 361 36 HOH HOH . I 8 HOH A 62 362 4 HOH HOH . I 8 HOH A 63 363 90 HOH HOH . I 8 HOH A 64 364 73 HOH HOH . I 8 HOH A 65 365 40 HOH HOH . I 8 HOH A 66 366 76 HOH HOH . I 8 HOH A 67 367 96 HOH HOH . I 8 HOH A 68 368 56 HOH HOH . I 8 HOH A 69 369 24 HOH HOH . I 8 HOH A 70 370 61 HOH HOH . I 8 HOH A 71 371 51 HOH HOH . I 8 HOH A 72 372 39 HOH HOH . I 8 HOH A 73 373 11 HOH HOH . I 8 HOH A 74 374 34 HOH HOH . I 8 HOH A 75 375 108 HOH HOH . I 8 HOH A 76 376 17 HOH HOH . I 8 HOH A 77 377 59 HOH HOH . I 8 HOH A 78 378 71 HOH HOH . I 8 HOH A 79 379 47 HOH HOH . I 8 HOH A 80 380 64 HOH HOH . I 8 HOH A 81 381 57 HOH HOH . I 8 HOH A 82 382 91 HOH HOH . I 8 HOH A 83 383 99 HOH HOH . I 8 HOH A 84 384 32 HOH HOH . I 8 HOH A 85 385 94 HOH HOH . I 8 HOH A 86 386 69 HOH HOH . I 8 HOH A 87 387 52 HOH HOH . I 8 HOH A 88 388 89 HOH HOH . I 8 HOH A 89 389 116 HOH HOH . I 8 HOH A 90 390 60 HOH HOH . I 8 HOH A 91 391 101 HOH HOH . I 8 HOH A 92 392 2 HOH HOH . I 8 HOH A 93 393 81 HOH HOH . I 8 HOH A 94 394 119 HOH HOH . I 8 HOH A 95 395 112 HOH HOH . I 8 HOH A 96 396 41 HOH HOH . I 8 HOH A 97 397 75 HOH HOH . I 8 HOH A 98 398 67 HOH HOH . I 8 HOH A 99 399 88 HOH HOH . I 8 HOH A 100 400 31 HOH HOH . I 8 HOH A 101 401 30 HOH HOH . I 8 HOH A 102 402 22 HOH HOH . I 8 HOH A 103 403 48 HOH HOH . I 8 HOH A 104 404 120 HOH HOH . I 8 HOH A 105 405 98 HOH HOH . I 8 HOH A 106 406 110 HOH HOH . I 8 HOH A 107 407 95 HOH HOH . I 8 HOH A 108 408 26 HOH HOH . I 8 HOH A 109 409 107 HOH HOH . I 8 HOH A 110 410 104 HOH HOH . I 8 HOH A 111 411 118 HOH HOH . I 8 HOH A 112 412 111 HOH HOH . I 8 HOH A 113 413 113 HOH HOH . I 8 HOH A 114 414 78 HOH HOH . I 8 HOH A 115 415 93 HOH HOH . I 8 HOH A 116 416 49 HOH HOH . I 8 HOH A 117 417 82 HOH HOH . I 8 HOH A 118 418 109 HOH HOH . I 8 HOH A 119 419 114 HOH HOH . I 8 HOH A 120 420 103 HOH HOH . I 8 HOH A 121 421 23 HOH HOH . I 8 HOH A 122 422 68 HOH HOH . I 8 HOH A 123 423 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 4ZL . . . B 2 -1.486 -6.593 4.892 1 20.23 ? CAA 4ZL 201 A 1 HETATM 2 C CAB 4ZL . . . B 2 -2.129 -7.519 5.782 1 22.82 ? CAB 4ZL 201 A 1 HETATM 3 C CAC 4ZL . . . B 2 -3.497 -7.911 5.623 1 24.17 ? CAC 4ZL 201 A 1 HETATM 4 C CAD 4ZL . . . B 2 -4.139 -7.498 4.41 1 24.47 ? CAD 4ZL 201 A 1 HETATM 5 C CAE 4ZL . . . B 2 -3.457 -6.633 3.517 1 21.9 ? CAE 4ZL 201 A 1 HETATM 6 C CAF 4ZL . . . B 2 -2.185 -6.127 3.723 1 20.14 ? CAF 4ZL 201 A 1 HETATM 7 C CAG 4ZL . . . B 2 -1.581 -5.208 2.567 1 16.97 ? CAG 4ZL 201 A 1 HETATM 8 N NAH 4ZL . . . B 2 -1.212 -4.06 3.523 1 20.61 ? NAH 4ZL 201 A 1 HETATM 9 C CAI 4ZL . . . B 2 -0.183 -3.298 3.029 1 18.56 ? CAI 4ZL 201 A 1 HETATM 10 O OAO 4ZL . . . B 2 0.469 -3.494 1.93 1 19.75 ? OAO 4ZL 201 A 1 HETATM 11 N NAJ 4ZL . . . B 2 -0.131 -2.152 3.827 1 18.8 ? NAJ 4ZL 201 A 1 HETATM 12 C CAK 4ZL . . . B 2 1.038 -1.331 3.779 1 21.36 ? CAK 4ZL 201 A 1 HETATM 13 C CAL 4ZL . . . B 2 2.039 -2.066 4.672 1 16.33 ? CAL 4ZL 201 A 1 HETATM 14 O OAQ 4ZL . . . B 2 1.815 -2.835 5.647 1 13.58 ? OAQ 4ZL 201 A 1 HETATM 15 O OAM 4ZL . . . B 2 3.213 -1.409 4.522 1 19.43 ? OAM 4ZL 201 A 1 HETATM 16 C CAN 4ZL . . . B 2 4.356 -1.745 5.357 1 18.07 ? CAN 4ZL 201 A 1 HETATM 17 C CAP 4ZL . . . B 2 5.626 -1.055 4.978 1 19.8 ? CAP 4ZL 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #