data_5CBU # _model_server_result.job_id VKbjsBCfwLfFrI1MBGMBiQ _model_server_result.datetime_utc '2024-12-01 15:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5CBU # _exptl.entry_id 5CBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.351 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBU _cell.length_a 57.638 _cell.length_b 57.638 _cell.length_c 114.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B K K . A K 201 1_555 E O4 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc2 B K K . A K 201 1_555 E O1 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc3 B K K . A K 201 1_555 E O2 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 B K K . A K 201 1_555 E O3 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc5 B K K . A K 201 1_555 E O1 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc6 B K K . A K 201 1_555 E O2 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc7 B K K . A K 201 1_555 E O3 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc8 B K K . A K 201 1_555 E O4 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? # _chem_comp.formula 'C17 H19 N3 O3' _chem_comp.formula_weight 313.351 _chem_comp.id 4ZM _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C4 4ZM doub 1 n n C5 N1 4ZM sing 2 n n C5 C6 4ZM sing 3 n n C4 N1 4ZM sing 4 n n C4 N 4ZM sing 5 n n C3 N 4ZM sing 6 n n C3 C2 4ZM sing 7 n n C6 C7 4ZM doub 8 n y C6 C11 4ZM sing 9 n y O C2 4ZM sing 10 n n O C1 4ZM sing 11 n n C7 C8 4ZM sing 12 n y C11 C10 4ZM doub 13 n y C2 O1 4ZM doub 14 n n C C1 4ZM sing 15 n n C8 C9 4ZM doub 16 n y C8 C12 4ZM sing 17 n n C10 C9 4ZM sing 18 n y C12 C16 4ZM doub 19 n y C12 C13 4ZM sing 20 n y C16 C15 4ZM sing 21 n y C13 C14 4ZM doub 22 n y C15 N2 4ZM doub 23 n y C14 N2 4ZM sing 24 n y N H1 4ZM sing 25 n n C H2 4ZM sing 26 n n C H3 4ZM sing 27 n n C H4 4ZM sing 28 n n N1 H5 4ZM sing 29 n n C1 H6 4ZM sing 30 n n C1 H7 4ZM sing 31 n n C3 H8 4ZM sing 32 n n C3 H9 4ZM sing 33 n n C5 H10 4ZM sing 34 n n C5 H11 4ZM sing 35 n n C7 H12 4ZM sing 36 n n C11 H13 4ZM sing 37 n n C10 H14 4ZM sing 38 n n C9 H15 4ZM sing 39 n n C16 H16 4ZM sing 40 n n C15 H17 4ZM sing 41 n n C14 H18 4ZM sing 42 n n C13 H19 4ZM sing 43 n n # _atom_sites.entry_id 5CBU _atom_sites.fract_transf_matrix[1][1] 0.01735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 201 1 K K . C 3 PG4 A 1 202 1 PG4 PG4 . D 4 EDO A 1 203 2 EDO EDO . E 5 PGE A 1 204 1 PGE PGE . F 6 4ZM A 1 205 1 4ZM E19 . G 6 4ZM A 1 206 2 4ZM E19 . H 7 HOH A 1 301 109 HOH HOH . H 7 HOH A 2 302 110 HOH HOH . H 7 HOH A 3 303 130 HOH HOH . H 7 HOH A 4 304 14 HOH HOH . H 7 HOH A 5 305 82 HOH HOH . H 7 HOH A 6 306 1 HOH HOH . H 7 HOH A 7 307 113 HOH HOH . H 7 HOH A 8 308 20 HOH HOH . H 7 HOH A 9 309 19 HOH HOH . H 7 HOH A 10 310 112 HOH HOH . H 7 HOH A 11 311 41 HOH HOH . H 7 HOH A 12 312 40 HOH HOH . H 7 HOH A 13 313 118 HOH HOH . H 7 HOH A 14 314 61 HOH HOH . H 7 HOH A 15 315 111 HOH HOH . H 7 HOH A 16 316 107 HOH HOH . H 7 HOH A 17 317 58 HOH HOH . H 7 HOH A 18 318 129 HOH HOH . H 7 HOH A 19 319 52 HOH HOH . H 7 HOH A 20 320 34 HOH HOH . H 7 HOH A 21 321 27 HOH HOH . H 7 HOH A 22 322 87 HOH HOH . H 7 HOH A 23 323 8 HOH HOH . H 7 HOH A 24 324 21 HOH HOH . H 7 HOH A 25 325 75 HOH HOH . H 7 HOH A 26 326 68 HOH HOH . H 7 HOH A 27 327 92 HOH HOH . H 7 HOH A 28 328 26 HOH HOH . H 7 HOH A 29 329 72 HOH HOH . H 7 HOH A 30 330 13 HOH HOH . H 7 HOH A 31 331 7 HOH HOH . H 7 HOH A 32 332 67 HOH HOH . H 7 HOH A 33 333 122 HOH HOH . H 7 HOH A 34 334 94 HOH HOH . H 7 HOH A 35 335 35 HOH HOH . H 7 HOH A 36 336 5 HOH HOH . H 7 HOH A 37 337 12 HOH HOH . H 7 HOH A 38 338 69 HOH HOH . H 7 HOH A 39 339 80 HOH HOH . H 7 HOH A 40 340 15 HOH HOH . H 7 HOH A 41 341 51 HOH HOH . H 7 HOH A 42 342 18 HOH HOH . H 7 HOH A 43 343 93 HOH HOH . H 7 HOH A 44 344 39 HOH HOH . H 7 HOH A 45 345 131 HOH HOH . H 7 HOH A 46 346 127 HOH HOH . H 7 HOH A 47 347 88 HOH HOH . H 7 HOH A 48 348 91 HOH HOH . H 7 HOH A 49 349 104 HOH HOH . H 7 HOH A 50 350 119 HOH HOH . H 7 HOH A 51 351 74 HOH HOH . H 7 HOH A 52 352 116 HOH HOH . H 7 HOH A 53 353 50 HOH HOH . H 7 HOH A 54 354 3 HOH HOH . H 7 HOH A 55 355 85 HOH HOH . H 7 HOH A 56 356 62 HOH HOH . H 7 HOH A 57 357 108 HOH HOH . H 7 HOH A 58 358 53 HOH HOH . H 7 HOH A 59 359 60 HOH HOH . H 7 HOH A 60 360 132 HOH HOH . H 7 HOH A 61 361 6 HOH HOH . H 7 HOH A 62 362 32 HOH HOH . H 7 HOH A 63 363 10 HOH HOH . H 7 HOH A 64 364 134 HOH HOH . H 7 HOH A 65 365 33 HOH HOH . H 7 HOH A 66 366 25 HOH HOH . H 7 HOH A 67 367 47 HOH HOH . H 7 HOH A 68 368 97 HOH HOH . H 7 HOH A 69 369 59 HOH HOH . H 7 HOH A 70 370 42 HOH HOH . H 7 HOH A 71 371 4 HOH HOH . H 7 HOH A 72 372 81 HOH HOH . H 7 HOH A 73 373 133 HOH HOH . H 7 HOH A 74 374 43 HOH HOH . H 7 HOH A 75 375 9 HOH HOH . H 7 HOH A 76 376 37 HOH HOH . H 7 HOH A 77 377 79 HOH HOH . H 7 HOH A 78 378 24 HOH HOH . H 7 HOH A 79 379 78 HOH HOH . H 7 HOH A 80 380 120 HOH HOH . H 7 HOH A 81 381 48 HOH HOH . H 7 HOH A 82 382 121 HOH HOH . H 7 HOH A 83 383 56 HOH HOH . H 7 HOH A 84 384 46 HOH HOH . H 7 HOH A 85 385 96 HOH HOH . H 7 HOH A 86 386 84 HOH HOH . H 7 HOH A 87 387 123 HOH HOH . H 7 HOH A 88 388 11 HOH HOH . H 7 HOH A 89 389 44 HOH HOH . H 7 HOH A 90 390 57 HOH HOH . H 7 HOH A 91 391 63 HOH HOH . H 7 HOH A 92 392 76 HOH HOH . H 7 HOH A 93 393 66 HOH HOH . H 7 HOH A 94 394 36 HOH HOH . H 7 HOH A 95 395 54 HOH HOH . H 7 HOH A 96 396 17 HOH HOH . H 7 HOH A 97 397 30 HOH HOH . H 7 HOH A 98 398 2 HOH HOH . H 7 HOH A 99 399 106 HOH HOH . H 7 HOH A 100 400 38 HOH HOH . H 7 HOH A 101 401 70 HOH HOH . H 7 HOH A 102 402 65 HOH HOH . H 7 HOH A 103 403 90 HOH HOH . H 7 HOH A 104 404 28 HOH HOH . H 7 HOH A 105 405 31 HOH HOH . H 7 HOH A 106 406 86 HOH HOH . H 7 HOH A 107 407 99 HOH HOH . H 7 HOH A 108 408 49 HOH HOH . H 7 HOH A 109 409 16 HOH HOH . H 7 HOH A 110 410 83 HOH HOH . H 7 HOH A 111 411 115 HOH HOH . H 7 HOH A 112 412 22 HOH HOH . H 7 HOH A 113 413 45 HOH HOH . H 7 HOH A 114 414 29 HOH HOH . H 7 HOH A 115 415 114 HOH HOH . H 7 HOH A 116 416 89 HOH HOH . H 7 HOH A 117 417 124 HOH HOH . H 7 HOH A 118 418 55 HOH HOH . H 7 HOH A 119 419 100 HOH HOH . H 7 HOH A 120 420 126 HOH HOH . H 7 HOH A 121 421 128 HOH HOH . H 7 HOH A 122 422 73 HOH HOH . H 7 HOH A 123 423 101 HOH HOH . H 7 HOH A 124 424 105 HOH HOH . H 7 HOH A 125 425 77 HOH HOH . H 7 HOH A 126 426 98 HOH HOH . H 7 HOH A 127 427 102 HOH HOH . H 7 HOH A 128 428 95 HOH HOH . H 7 HOH A 129 429 125 HOH HOH . H 7 HOH A 130 430 23 HOH HOH . H 7 HOH A 131 431 64 HOH HOH . H 7 HOH A 132 432 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 4ZM . . . G 6 2.065 -8.635 -7.849 1 20.59 ? N 4ZM 206 A 1 HETATM 2 C C 4ZM . . . G 6 2.776 -3.412 -6.314 1 24.5 ? C 4ZM 206 A 1 HETATM 3 O O 4ZM . . . G 6 1.36 -4.956 -7.645 1 24.7 ? O 4ZM 206 A 1 HETATM 4 N N1 4ZM . . . G 6 3.89 -10.083 -7.671 1 25.69 ? N1 4ZM 206 A 1 HETATM 5 C C1 4ZM . . . G 6 1.38 -3.733 -6.945 1 24.84 ? C1 4ZM 206 A 1 HETATM 6 O O1 4ZM . . . G 6 1.673 -6.532 -6.054 1 23.04 ? O1 4ZM 206 A 1 HETATM 7 N N2 4ZM . . . G 6 8.795 -9.786 -14.725 1 37.76 ? N2 4ZM 206 A 1 HETATM 8 C C2 4ZM . . . G 6 1.559 -6.291 -7.214 1 24.14 ? C2 4ZM 206 A 1 HETATM 9 O O2 4ZM . . . G 6 4.014 -8.214 -9.056 1 25.84 ? O2 4ZM 206 A 1 HETATM 10 C C3 4ZM . . . G 6 1.483 -7.338 -8.298 1 25.18 ? C3 4ZM 206 A 1 HETATM 11 C C4 4ZM . . . G 6 3.363 -8.947 -8.221 1 27.57 ? C4 4ZM 206 A 1 HETATM 12 C C5 4ZM . . . G 6 5.265 -10.485 -7.998 1 25.61 ? C5 4ZM 206 A 1 HETATM 13 C C6 4ZM . . . G 6 5.269 -11.181 -9.391 1 26.95 ? C6 4ZM 206 A 1 HETATM 14 C C7 4ZM . . . G 6 6.11 -10.641 -10.442 1 28.96 ? C7 4ZM 206 A 1 HETATM 15 C C8 4ZM . . . G 6 6.132 -11.177 -11.716 1 25.8 ? C8 4ZM 206 A 1 HETATM 16 C C11 4ZM . . . G 6 4.378 -12.26 -9.674 1 29.63 ? C11 4ZM 206 A 1 HETATM 17 C C10 4ZM . . . G 6 4.403 -12.835 -10.968 1 29.94 ? C10 4ZM 206 A 1 HETATM 18 C C9 4ZM . . . G 6 5.293 -12.295 -11.97 1 25.89 ? C9 4ZM 206 A 1 HETATM 19 C C12 4ZM . . . G 6 7.053 -10.677 -12.79 1 30.87 ? C12 4ZM 206 A 1 HETATM 20 C C16 4ZM . . . G 6 7.582 -9.349 -12.741 1 34.22 ? C16 4ZM 206 A 1 HETATM 21 C C15 4ZM . . . G 6 8.472 -8.949 -13.737 1 35.37 ? C15 4ZM 206 A 1 HETATM 22 C C14 4ZM . . . G 6 8.336 -11.054 -14.834 1 35.41 ? C14 4ZM 206 A 1 HETATM 23 C C13 4ZM . . . G 6 7.449 -11.543 -13.885 1 34.61 ? C13 4ZM 206 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #