data_5CBU
#
_model_server_result.job_id            WB39nev6PZWXy9e-JxbmzA 
_model_server_result.datetime_utc      '2024-11-08 16:13:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    5CBU 
#
_exptl.entry_id    5CBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              313.351 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CBU 
_cell.length_a            57.638 
_cell.length_b            57.638 
_cell.length_c            114.735 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B K K . A K 201 1_555 E O4 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc2 B K K . A K 201 1_555 E O1 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc3 B K K . A K 201 1_555 E O2 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc4 B K K . A K 201 1_555 E O3 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc5 B K K . A K 201 1_555 E O1 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc6 B K K . A K 201 1_555 E O2 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc7 B K K . A K 201 1_555 E O3 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc8 B K K . A K 201 1_555 E O4 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
#
_chem_comp.formula           'C17 H19 N3 O3' 
_chem_comp.formula_weight    313.351 
_chem_comp.id                4ZM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C4 4ZM doub 1 n n 
C5 N1 4ZM sing 2 n n 
C5 C6 4ZM sing 3 n n 
C4 N1 4ZM sing 4 n n 
C4 N 4ZM sing 5 n n 
C3 N 4ZM sing 6 n n 
C3 C2 4ZM sing 7 n n 
C6 C7 4ZM doub 8 n y 
C6 C11 4ZM sing 9 n y 
O C2 4ZM sing 10 n n 
O C1 4ZM sing 11 n n 
C7 C8 4ZM sing 12 n y 
C11 C10 4ZM doub 13 n y 
C2 O1 4ZM doub 14 n n 
C C1 4ZM sing 15 n n 
C8 C9 4ZM doub 16 n y 
C8 C12 4ZM sing 17 n n 
C10 C9 4ZM sing 18 n y 
C12 C16 4ZM doub 19 n y 
C12 C13 4ZM sing 20 n y 
C16 C15 4ZM sing 21 n y 
C13 C14 4ZM doub 22 n y 
C15 N2 4ZM doub 23 n y 
C14 N2 4ZM sing 24 n y 
N H1 4ZM sing 25 n n 
C H2 4ZM sing 26 n n 
C H3 4ZM sing 27 n n 
C H4 4ZM sing 28 n n 
N1 H5 4ZM sing 29 n n 
C1 H6 4ZM sing 30 n n 
C1 H7 4ZM sing 31 n n 
C3 H8 4ZM sing 32 n n 
C3 H9 4ZM sing 33 n n 
C5 H10 4ZM sing 34 n n 
C5 H11 4ZM sing 35 n n 
C7 H12 4ZM sing 36 n n 
C11 H13 4ZM sing 37 n n 
C10 H14 4ZM sing 38 n n 
C9 H15 4ZM sing 39 n n 
C16 H16 4ZM sing 40 n n 
C15 H17 4ZM sing 41 n n 
C14 H18 4ZM sing 42 n n 
C13 H19 4ZM sing 43 n n 
#
_atom_sites.entry_id                     5CBU 
_atom_sites.fract_transf_matrix[1][1]    0.01735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K A 1 201 1 K K . 
C 3 PG4 A 1 202 1 PG4 PG4 . 
D 4 EDO A 1 203 2 EDO EDO . 
E 5 PGE A 1 204 1 PGE PGE . 
F 6 4ZM A 1 205 1 4ZM E19 . 
G 6 4ZM A 1 206 2 4ZM E19 . 
H 7 HOH A 1 301 109 HOH HOH . 
H 7 HOH A 2 302 110 HOH HOH . 
H 7 HOH A 3 303 130 HOH HOH . 
H 7 HOH A 4 304 14 HOH HOH . 
H 7 HOH A 5 305 82 HOH HOH . 
H 7 HOH A 6 306 1 HOH HOH . 
H 7 HOH A 7 307 113 HOH HOH . 
H 7 HOH A 8 308 20 HOH HOH . 
H 7 HOH A 9 309 19 HOH HOH . 
H 7 HOH A 10 310 112 HOH HOH . 
H 7 HOH A 11 311 41 HOH HOH . 
H 7 HOH A 12 312 40 HOH HOH . 
H 7 HOH A 13 313 118 HOH HOH . 
H 7 HOH A 14 314 61 HOH HOH . 
H 7 HOH A 15 315 111 HOH HOH . 
H 7 HOH A 16 316 107 HOH HOH . 
H 7 HOH A 17 317 58 HOH HOH . 
H 7 HOH A 18 318 129 HOH HOH . 
H 7 HOH A 19 319 52 HOH HOH . 
H 7 HOH A 20 320 34 HOH HOH . 
H 7 HOH A 21 321 27 HOH HOH . 
H 7 HOH A 22 322 87 HOH HOH . 
H 7 HOH A 23 323 8 HOH HOH . 
H 7 HOH A 24 324 21 HOH HOH . 
H 7 HOH A 25 325 75 HOH HOH . 
H 7 HOH A 26 326 68 HOH HOH . 
H 7 HOH A 27 327 92 HOH HOH . 
H 7 HOH A 28 328 26 HOH HOH . 
H 7 HOH A 29 329 72 HOH HOH . 
H 7 HOH A 30 330 13 HOH HOH . 
H 7 HOH A 31 331 7 HOH HOH . 
H 7 HOH A 32 332 67 HOH HOH . 
H 7 HOH A 33 333 122 HOH HOH . 
H 7 HOH A 34 334 94 HOH HOH . 
H 7 HOH A 35 335 35 HOH HOH . 
H 7 HOH A 36 336 5 HOH HOH . 
H 7 HOH A 37 337 12 HOH HOH . 
H 7 HOH A 38 338 69 HOH HOH . 
H 7 HOH A 39 339 80 HOH HOH . 
H 7 HOH A 40 340 15 HOH HOH . 
H 7 HOH A 41 341 51 HOH HOH . 
H 7 HOH A 42 342 18 HOH HOH . 
H 7 HOH A 43 343 93 HOH HOH . 
H 7 HOH A 44 344 39 HOH HOH . 
H 7 HOH A 45 345 131 HOH HOH . 
H 7 HOH A 46 346 127 HOH HOH . 
H 7 HOH A 47 347 88 HOH HOH . 
H 7 HOH A 48 348 91 HOH HOH . 
H 7 HOH A 49 349 104 HOH HOH . 
H 7 HOH A 50 350 119 HOH HOH . 
H 7 HOH A 51 351 74 HOH HOH . 
H 7 HOH A 52 352 116 HOH HOH . 
H 7 HOH A 53 353 50 HOH HOH . 
H 7 HOH A 54 354 3 HOH HOH . 
H 7 HOH A 55 355 85 HOH HOH . 
H 7 HOH A 56 356 62 HOH HOH . 
H 7 HOH A 57 357 108 HOH HOH . 
H 7 HOH A 58 358 53 HOH HOH . 
H 7 HOH A 59 359 60 HOH HOH . 
H 7 HOH A 60 360 132 HOH HOH . 
H 7 HOH A 61 361 6 HOH HOH . 
H 7 HOH A 62 362 32 HOH HOH . 
H 7 HOH A 63 363 10 HOH HOH . 
H 7 HOH A 64 364 134 HOH HOH . 
H 7 HOH A 65 365 33 HOH HOH . 
H 7 HOH A 66 366 25 HOH HOH . 
H 7 HOH A 67 367 47 HOH HOH . 
H 7 HOH A 68 368 97 HOH HOH . 
H 7 HOH A 69 369 59 HOH HOH . 
H 7 HOH A 70 370 42 HOH HOH . 
H 7 HOH A 71 371 4 HOH HOH . 
H 7 HOH A 72 372 81 HOH HOH . 
H 7 HOH A 73 373 133 HOH HOH . 
H 7 HOH A 74 374 43 HOH HOH . 
H 7 HOH A 75 375 9 HOH HOH . 
H 7 HOH A 76 376 37 HOH HOH . 
H 7 HOH A 77 377 79 HOH HOH . 
H 7 HOH A 78 378 24 HOH HOH . 
H 7 HOH A 79 379 78 HOH HOH . 
H 7 HOH A 80 380 120 HOH HOH . 
H 7 HOH A 81 381 48 HOH HOH . 
H 7 HOH A 82 382 121 HOH HOH . 
H 7 HOH A 83 383 56 HOH HOH . 
H 7 HOH A 84 384 46 HOH HOH . 
H 7 HOH A 85 385 96 HOH HOH . 
H 7 HOH A 86 386 84 HOH HOH . 
H 7 HOH A 87 387 123 HOH HOH . 
H 7 HOH A 88 388 11 HOH HOH . 
H 7 HOH A 89 389 44 HOH HOH . 
H 7 HOH A 90 390 57 HOH HOH . 
H 7 HOH A 91 391 63 HOH HOH . 
H 7 HOH A 92 392 76 HOH HOH . 
H 7 HOH A 93 393 66 HOH HOH . 
H 7 HOH A 94 394 36 HOH HOH . 
H 7 HOH A 95 395 54 HOH HOH . 
H 7 HOH A 96 396 17 HOH HOH . 
H 7 HOH A 97 397 30 HOH HOH . 
H 7 HOH A 98 398 2 HOH HOH . 
H 7 HOH A 99 399 106 HOH HOH . 
H 7 HOH A 100 400 38 HOH HOH . 
H 7 HOH A 101 401 70 HOH HOH . 
H 7 HOH A 102 402 65 HOH HOH . 
H 7 HOH A 103 403 90 HOH HOH . 
H 7 HOH A 104 404 28 HOH HOH . 
H 7 HOH A 105 405 31 HOH HOH . 
H 7 HOH A 106 406 86 HOH HOH . 
H 7 HOH A 107 407 99 HOH HOH . 
H 7 HOH A 108 408 49 HOH HOH . 
H 7 HOH A 109 409 16 HOH HOH . 
H 7 HOH A 110 410 83 HOH HOH . 
H 7 HOH A 111 411 115 HOH HOH . 
H 7 HOH A 112 412 22 HOH HOH . 
H 7 HOH A 113 413 45 HOH HOH . 
H 7 HOH A 114 414 29 HOH HOH . 
H 7 HOH A 115 415 114 HOH HOH . 
H 7 HOH A 116 416 89 HOH HOH . 
H 7 HOH A 117 417 124 HOH HOH . 
H 7 HOH A 118 418 55 HOH HOH . 
H 7 HOH A 119 419 100 HOH HOH . 
H 7 HOH A 120 420 126 HOH HOH . 
H 7 HOH A 121 421 128 HOH HOH . 
H 7 HOH A 122 422 73 HOH HOH . 
H 7 HOH A 123 423 101 HOH HOH . 
H 7 HOH A 124 424 105 HOH HOH . 
H 7 HOH A 125 425 77 HOH HOH . 
H 7 HOH A 126 426 98 HOH HOH . 
H 7 HOH A 127 427 102 HOH HOH . 
H 7 HOH A 128 428 95 HOH HOH . 
H 7 HOH A 129 429 125 HOH HOH . 
H 7 HOH A 130 430 23 HOH HOH . 
H 7 HOH A 131 431 64 HOH HOH . 
H 7 HOH A 132 432 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 4ZM . . . G 6 2.065 -8.635 -7.849 1 20.59 ? N 4ZM 206 A 1 
HETATM 2 C C 4ZM . . . G 6 2.776 -3.412 -6.314 1 24.5 ? C 4ZM 206 A 1 
HETATM 3 O O 4ZM . . . G 6 1.36 -4.956 -7.645 1 24.7 ? O 4ZM 206 A 1 
HETATM 4 N N1 4ZM . . . G 6 3.89 -10.083 -7.671 1 25.69 ? N1 4ZM 206 A 1 
HETATM 5 C C1 4ZM . . . G 6 1.38 -3.733 -6.945 1 24.84 ? C1 4ZM 206 A 1 
HETATM 6 O O1 4ZM . . . G 6 1.673 -6.532 -6.054 1 23.04 ? O1 4ZM 206 A 1 
HETATM 7 N N2 4ZM . . . G 6 8.795 -9.786 -14.725 1 37.76 ? N2 4ZM 206 A 1 
HETATM 8 C C2 4ZM . . . G 6 1.559 -6.291 -7.214 1 24.14 ? C2 4ZM 206 A 1 
HETATM 9 O O2 4ZM . . . G 6 4.014 -8.214 -9.056 1 25.84 ? O2 4ZM 206 A 1 
HETATM 10 C C3 4ZM . . . G 6 1.483 -7.338 -8.298 1 25.18 ? C3 4ZM 206 A 1 
HETATM 11 C C4 4ZM . . . G 6 3.363 -8.947 -8.221 1 27.57 ? C4 4ZM 206 A 1 
HETATM 12 C C5 4ZM . . . G 6 5.265 -10.485 -7.998 1 25.61 ? C5 4ZM 206 A 1 
HETATM 13 C C6 4ZM . . . G 6 5.269 -11.181 -9.391 1 26.95 ? C6 4ZM 206 A 1 
HETATM 14 C C7 4ZM . . . G 6 6.11 -10.641 -10.442 1 28.96 ? C7 4ZM 206 A 1 
HETATM 15 C C8 4ZM . . . G 6 6.132 -11.177 -11.716 1 25.8 ? C8 4ZM 206 A 1 
HETATM 16 C C11 4ZM . . . G 6 4.378 -12.26 -9.674 1 29.63 ? C11 4ZM 206 A 1 
HETATM 17 C C10 4ZM . . . G 6 4.403 -12.835 -10.968 1 29.94 ? C10 4ZM 206 A 1 
HETATM 18 C C9 4ZM . . . G 6 5.293 -12.295 -11.97 1 25.89 ? C9 4ZM 206 A 1 
HETATM 19 C C12 4ZM . . . G 6 7.053 -10.677 -12.79 1 30.87 ? C12 4ZM 206 A 1 
HETATM 20 C C16 4ZM . . . G 6 7.582 -9.349 -12.741 1 34.22 ? C16 4ZM 206 A 1 
HETATM 21 C C15 4ZM . . . G 6 8.472 -8.949 -13.737 1 35.37 ? C15 4ZM 206 A 1 
HETATM 22 C C14 4ZM . . . G 6 8.336 -11.054 -14.834 1 35.41 ? C14 4ZM 206 A 1 
HETATM 23 C C13 4ZM . . . G 6 7.449 -11.543 -13.885 1 34.61 ? C13 4ZM 206 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           23 
#