data_5CBV # _model_server_result.job_id rzfH2m2CNdAMtXMCxkRsew _model_server_result.datetime_utc '2024-10-15 11:21:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5CBV # _exptl.entry_id 5CBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.351 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl N-{[3-(pyridin-3-yl)benzyl]carbamoyl}glycinate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBV _cell.length_a 57.43 _cell.length_b 57.43 _cell.length_c 113.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B K K . A K 201 1_555 E O4 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc2 B K K . A K 201 1_555 E O1 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.252 ? metalc ? metalc3 B K K . A K 201 1_555 E O2 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc4 B K K . A K 201 1_555 E O3 PGE . A PGE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc5 B K K . A K 201 1_555 E O1 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.252 ? metalc ? metalc6 B K K . A K 201 1_555 E O2 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc7 B K K . A K 201 1_555 E O3 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc8 B K K . A K 201 1_555 E O4 PGE . A PGE 204 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? # _chem_comp.formula 'C17 H19 N3 O3' _chem_comp.formula_weight 313.351 _chem_comp.id 4ZP _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl N-{[3-(pyridin-3-yl)benzyl]carbamoyl}glycinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C15 4ZP doub 1 n n C1 N14 4ZP sing 2 n n C1 C7 4ZP sing 3 n n C15 N14 4ZP sing 4 n n C15 N16 4ZP sing 5 n n C7 C6 4ZP doub 6 n y C7 C2 4ZP sing 7 n y C9 N10 4ZP doub 8 n y C9 C8 4ZP sing 9 n y C6 C5 4ZP sing 10 n y N10 C11 4ZP sing 11 n y N16 C17 4ZP sing 12 n n C17 C18 4ZP sing 13 n n C2 C3 4ZP doub 14 n y O21 C18 4ZP sing 15 n n O21 C22 4ZP sing 16 n n C5 C8 4ZP sing 17 n n C5 C4 4ZP doub 18 n y C18 O20 4ZP doub 19 n n C8 C13 4ZP doub 20 n y C23 C22 4ZP sing 21 n n C11 C12 4ZP doub 22 n y C3 C4 4ZP sing 23 n y C13 C12 4ZP sing 24 n y C1 H1 4ZP sing 25 n n C1 H2 4ZP sing 26 n n C2 H3 4ZP sing 27 n n C3 H4 4ZP sing 28 n n C4 H5 4ZP sing 29 n n C6 H6 4ZP sing 30 n n C9 H7 4ZP sing 31 n n C11 H8 4ZP sing 32 n n C12 H9 4ZP sing 33 n n C13 H10 4ZP sing 34 n n N14 H11 4ZP sing 35 n n N16 H12 4ZP sing 36 n n C17 H13 4ZP sing 37 n n C17 H14 4ZP sing 38 n n C22 H15 4ZP sing 39 n n C22 H16 4ZP sing 40 n n C23 H17 4ZP sing 41 n n C23 H18 4ZP sing 42 n n C23 H19 4ZP sing 43 n n # _atom_sites.entry_id 5CBV _atom_sites.fract_transf_matrix[1][1] 0.017413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 201 1 K K . C 3 FMT A 1 202 1 FMT FMT . D 4 PG4 A 1 203 1 PG4 PG4 . E 5 PGE A 1 204 1 PGE PGE . F 6 4ZP A 1 205 1 4ZP Z17 . G 7 HOH A 1 301 109 HOH HOH . G 7 HOH A 2 302 116 HOH HOH . G 7 HOH A 3 303 40 HOH HOH . G 7 HOH A 4 304 52 HOH HOH . G 7 HOH A 5 305 122 HOH HOH . G 7 HOH A 6 306 113 HOH HOH . G 7 HOH A 7 307 20 HOH HOH . G 7 HOH A 8 308 1 HOH HOH . G 7 HOH A 9 309 82 HOH HOH . G 7 HOH A 10 310 14 HOH HOH . G 7 HOH A 11 311 94 HOH HOH . G 7 HOH A 12 312 16 HOH HOH . G 7 HOH A 13 313 80 HOH HOH . G 7 HOH A 14 314 118 HOH HOH . G 7 HOH A 15 315 112 HOH HOH . G 7 HOH A 16 316 19 HOH HOH . G 7 HOH A 17 317 78 HOH HOH . G 7 HOH A 18 318 111 HOH HOH . G 7 HOH A 19 319 110 HOH HOH . G 7 HOH A 20 320 51 HOH HOH . G 7 HOH A 21 321 58 HOH HOH . G 7 HOH A 22 322 8 HOH HOH . G 7 HOH A 23 323 107 HOH HOH . G 7 HOH A 24 324 41 HOH HOH . G 7 HOH A 25 325 12 HOH HOH . G 7 HOH A 26 326 43 HOH HOH . G 7 HOH A 27 327 47 HOH HOH . G 7 HOH A 28 328 21 HOH HOH . G 7 HOH A 29 329 79 HOH HOH . G 7 HOH A 30 330 131 HOH HOH . G 7 HOH A 31 331 42 HOH HOH . G 7 HOH A 32 332 93 HOH HOH . G 7 HOH A 33 333 132 HOH HOH . G 7 HOH A 34 334 129 HOH HOH . G 7 HOH A 35 335 5 HOH HOH . G 7 HOH A 36 336 92 HOH HOH . G 7 HOH A 37 337 134 HOH HOH . G 7 HOH A 38 338 87 HOH HOH . G 7 HOH A 39 339 39 HOH HOH . G 7 HOH A 40 340 27 HOH HOH . G 7 HOH A 41 341 75 HOH HOH . G 7 HOH A 42 342 97 HOH HOH . G 7 HOH A 43 343 61 HOH HOH . G 7 HOH A 44 344 72 HOH HOH . G 7 HOH A 45 345 18 HOH HOH . G 7 HOH A 46 346 15 HOH HOH . G 7 HOH A 47 347 69 HOH HOH . G 7 HOH A 48 348 127 HOH HOH . G 7 HOH A 49 349 35 HOH HOH . G 7 HOH A 50 350 81 HOH HOH . G 7 HOH A 51 351 67 HOH HOH . G 7 HOH A 52 352 7 HOH HOH . G 7 HOH A 53 353 50 HOH HOH . G 7 HOH A 54 354 76 HOH HOH . G 7 HOH A 55 355 60 HOH HOH . G 7 HOH A 56 356 74 HOH HOH . G 7 HOH A 57 357 6 HOH HOH . G 7 HOH A 58 358 13 HOH HOH . G 7 HOH A 59 359 10 HOH HOH . G 7 HOH A 60 360 34 HOH HOH . G 7 HOH A 61 361 24 HOH HOH . G 7 HOH A 62 362 62 HOH HOH . G 7 HOH A 63 363 68 HOH HOH . G 7 HOH A 64 364 59 HOH HOH . G 7 HOH A 65 365 108 HOH HOH . G 7 HOH A 66 366 104 HOH HOH . G 7 HOH A 67 367 56 HOH HOH . G 7 HOH A 68 368 33 HOH HOH . G 7 HOH A 69 369 4 HOH HOH . G 7 HOH A 70 370 119 HOH HOH . G 7 HOH A 71 371 25 HOH HOH . G 7 HOH A 72 372 31 HOH HOH . G 7 HOH A 73 373 3 HOH HOH . G 7 HOH A 74 374 46 HOH HOH . G 7 HOH A 75 375 86 HOH HOH . G 7 HOH A 76 376 120 HOH HOH . G 7 HOH A 77 377 37 HOH HOH . G 7 HOH A 78 378 48 HOH HOH . G 7 HOH A 79 379 11 HOH HOH . G 7 HOH A 80 380 88 HOH HOH . G 7 HOH A 81 381 66 HOH HOH . G 7 HOH A 82 382 2 HOH HOH . G 7 HOH A 83 383 130 HOH HOH . G 7 HOH A 84 384 32 HOH HOH . G 7 HOH A 85 385 38 HOH HOH . G 7 HOH A 86 386 44 HOH HOH . G 7 HOH A 87 387 85 HOH HOH . G 7 HOH A 88 388 45 HOH HOH . G 7 HOH A 89 389 121 HOH HOH . G 7 HOH A 90 390 117 HOH HOH . G 7 HOH A 91 391 54 HOH HOH . G 7 HOH A 92 392 123 HOH HOH . G 7 HOH A 93 393 9 HOH HOH . G 7 HOH A 94 394 30 HOH HOH . G 7 HOH A 95 395 17 HOH HOH . G 7 HOH A 96 396 28 HOH HOH . G 7 HOH A 97 397 135 HOH HOH . G 7 HOH A 98 398 65 HOH HOH . G 7 HOH A 99 399 133 HOH HOH . G 7 HOH A 100 400 91 HOH HOH . G 7 HOH A 101 401 70 HOH HOH . G 7 HOH A 102 402 96 HOH HOH . G 7 HOH A 103 403 53 HOH HOH . G 7 HOH A 104 404 22 HOH HOH . G 7 HOH A 105 405 57 HOH HOH . G 7 HOH A 106 406 115 HOH HOH . G 7 HOH A 107 407 36 HOH HOH . G 7 HOH A 108 408 29 HOH HOH . G 7 HOH A 109 409 63 HOH HOH . G 7 HOH A 110 410 83 HOH HOH . G 7 HOH A 111 411 89 HOH HOH . G 7 HOH A 112 412 49 HOH HOH . G 7 HOH A 113 413 26 HOH HOH . G 7 HOH A 114 414 106 HOH HOH . G 7 HOH A 115 415 99 HOH HOH . G 7 HOH A 116 416 84 HOH HOH . G 7 HOH A 117 417 114 HOH HOH . G 7 HOH A 118 418 55 HOH HOH . G 7 HOH A 119 419 90 HOH HOH . G 7 HOH A 120 420 124 HOH HOH . G 7 HOH A 121 421 100 HOH HOH . G 7 HOH A 122 422 128 HOH HOH . G 7 HOH A 123 423 105 HOH HOH . G 7 HOH A 124 424 101 HOH HOH . G 7 HOH A 125 425 73 HOH HOH . G 7 HOH A 126 426 126 HOH HOH . G 7 HOH A 127 427 77 HOH HOH . G 7 HOH A 128 428 98 HOH HOH . G 7 HOH A 129 429 102 HOH HOH . G 7 HOH A 130 430 95 HOH HOH . G 7 HOH A 131 431 125 HOH HOH . G 7 HOH A 132 432 23 HOH HOH . G 7 HOH A 133 433 64 HOH HOH . G 7 HOH A 134 434 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4ZP . . . F 6 -1.828 -4.857 2.424 1 22.8 ? C1 4ZP 205 A 1 HETATM 2 C C2 4ZP . . . F 6 -1.097 -6.208 4.403 1 19.96 ? C2 4ZP 205 A 1 HETATM 3 C C3 4ZP . . . F 6 -1.328 -7.148 5.383 1 19.37 ? C3 4ZP 205 A 1 HETATM 4 C C4 4ZP . . . F 6 -2.528 -7.762 5.555 1 19.58 ? C4 4ZP 205 A 1 HETATM 5 C C5 4ZP . . . F 6 -3.542 -7.422 4.603 1 22.74 ? C5 4ZP 205 A 1 HETATM 6 C C6 4ZP . . . F 6 -3.3 -6.504 3.59 1 21.46 ? C6 4ZP 205 A 1 HETATM 7 C C7 4ZP . . . F 6 -2.078 -5.872 3.492 1 20.17 ? C7 4ZP 205 A 1 HETATM 8 C C8 4ZP . . . F 6 -4.877 -8.053 4.664 1 26.91 ? C8 4ZP 205 A 1 HETATM 9 C C9 4ZP . . . F 6 -5.44 -8.708 3.575 1 28.6 ? C9 4ZP 205 A 1 HETATM 10 C C11 4ZP . . . F 6 -7.419 -9.185 4.8 1 32.85 ? C11 4ZP 205 A 1 HETATM 11 N N10 4ZP . . . F 6 -6.678 -9.256 3.66 1 33.62 ? N10 4ZP 205 A 1 HETATM 12 C C12 4ZP . . . F 6 -6.85 -8.545 5.891 1 29.21 ? C12 4ZP 205 A 1 HETATM 13 C C13 4ZP . . . F 6 -5.59 -7.965 5.848 1 29.55 ? C13 4ZP 205 A 1 HETATM 14 N N14 4ZP . . . F 6 -1.556 -3.614 3.098 1 23.15 ? N14 4ZP 205 A 1 HETATM 15 C C15 4ZP . . . F 6 -0.392 -2.964 3.003 1 20.64 ? C15 4ZP 205 A 1 HETATM 16 N N16 4ZP . . . F 6 -0.245 -1.925 3.809 1 18.8 ? N16 4ZP 205 A 1 HETATM 17 C C17 4ZP . . . F 6 0.975 -1.155 3.84 1 19.49 ? C17 4ZP 205 A 1 HETATM 18 C C18 4ZP . . . F 6 2.025 -1.895 4.647 1 18.09 ? C18 4ZP 205 A 1 HETATM 19 O O19 4ZP . . . F 6 0.535 -3.288 2.26 1 21.38 ? O19 4ZP 205 A 1 HETATM 20 O O20 4ZP . . . F 6 1.73 -2.729 5.452 1 13.06 ? O20 4ZP 205 A 1 HETATM 21 O O21 4ZP . . . F 6 3.339 -1.419 4.477 1 18.59 ? O21 4ZP 205 A 1 HETATM 22 C C22 4ZP . . . F 6 4.452 -1.898 5.208 1 18.75 ? C22 4ZP 205 A 1 HETATM 23 C C23 4ZP . . . F 6 5.635 -1.059 4.784 1 17.55 ? C23 4ZP 205 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #