data_5CBW # _model_server_result.job_id Rq1ULsTETVVsvDL9_lRRaA _model_server_result.datetime_utc '2024-11-08 17:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5CBW # _exptl.entry_id 5CBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CBW _cell.length_a 57.265 _cell.length_b 57.265 _cell.length_c 114.502 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 7 A TYR 7 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.273 ? metalc ? metalc2 A OD1 ASP 160 A ASP 160 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc3 A O CYS 161 A CYS 161 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc4 B K K . A K 201 1_555 F O4 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc5 B K K . A K 201 1_555 F O1 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc6 B K K . A K 201 1_555 F O2 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc7 B K K . A K 201 1_555 F O3 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc8 B K K . A K 201 1_555 F O1 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc9 B K K . A K 201 1_555 F O2 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc10 B K K . A K 201 1_555 F O3 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc11 B K K . A K 201 1_555 F O4 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc12 C K K . A K 202 1_555 D O1 FMT . A FMT 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc13 C K K . A K 202 1_555 H O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.454 ? metalc ? metalc14 C K K . A K 202 1_555 H O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 311 n n C1 C2 PGE sing 312 n n C1 H1 PGE sing 313 n n C1 H12 PGE sing 314 n n O1 HO1 PGE sing 315 n n C2 O2 PGE sing 316 n n C2 H2 PGE sing 317 n n C2 H22 PGE sing 318 n n O2 C3 PGE sing 319 n n C3 C4 PGE sing 320 n n C3 H3 PGE sing 321 n n C3 H32 PGE sing 322 n n C4 O3 PGE sing 323 n n C4 H4 PGE sing 324 n n C4 H42 PGE sing 325 n n O4 C6 PGE sing 326 n n O4 HO4 PGE sing 327 n n C6 C5 PGE sing 328 n n C6 H6 PGE sing 329 n n C6 H62 PGE sing 330 n n C5 O3 PGE sing 331 n n C5 H5 PGE sing 332 n n C5 H52 PGE sing 333 n n # _atom_sites.entry_id 5CBW _atom_sites.fract_transf_matrix[1][1] 0.017463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 201 1 K K . C 2 K A 1 202 2 K K . D 3 FMT A 1 203 1 FMT FMT . E 4 PG4 A 1 204 1 PG4 PG4 . F 5 PGE A 1 205 1 PGE PGE . G 6 4ZO A 1 206 1 4ZO R18 . H 7 HOH A 1 301 124 HOH HOH . H 7 HOH A 2 302 116 HOH HOH . H 7 HOH A 3 303 142 HOH HOH . H 7 HOH A 4 304 16 HOH HOH . H 7 HOH A 5 305 64 HOH HOH . H 7 HOH A 6 306 121 HOH HOH . H 7 HOH A 7 307 42 HOH HOH . H 7 HOH A 8 308 136 HOH HOH . H 7 HOH A 9 309 54 HOH HOH . H 7 HOH A 10 310 119 HOH HOH . H 7 HOH A 11 311 159 HOH HOH . H 7 HOH A 12 312 82 HOH HOH . H 7 HOH A 13 313 84 HOH HOH . H 7 HOH A 14 314 144 HOH HOH . H 7 HOH A 15 315 99 HOH HOH . H 7 HOH A 16 316 65 HOH HOH . H 7 HOH A 17 317 160 HOH HOH . H 7 HOH A 18 318 86 HOH HOH . H 7 HOH A 19 319 91 HOH HOH . H 7 HOH A 20 320 1 HOH HOH . H 7 HOH A 21 321 94 HOH HOH . H 7 HOH A 22 322 20 HOH HOH . H 7 HOH A 23 323 43 HOH HOH . H 7 HOH A 24 324 14 HOH HOH . H 7 HOH A 25 325 76 HOH HOH . H 7 HOH A 26 326 19 HOH HOH . H 7 HOH A 27 327 118 HOH HOH . H 7 HOH A 28 328 21 HOH HOH . H 7 HOH A 29 329 73 HOH HOH . H 7 HOH A 30 330 114 HOH HOH . H 7 HOH A 31 331 53 HOH HOH . H 7 HOH A 32 332 41 HOH HOH . H 7 HOH A 33 333 45 HOH HOH . H 7 HOH A 34 334 61 HOH HOH . H 7 HOH A 35 335 37 HOH HOH . H 7 HOH A 36 336 10 HOH HOH . H 7 HOH A 37 337 83 HOH HOH . H 7 HOH A 38 338 5 HOH HOH . H 7 HOH A 39 339 27 HOH HOH . H 7 HOH A 40 340 72 HOH HOH . H 7 HOH A 41 341 78 HOH HOH . H 7 HOH A 42 342 79 HOH HOH . H 7 HOH A 43 343 36 HOH HOH . H 7 HOH A 44 344 12 HOH HOH . H 7 HOH A 45 345 49 HOH HOH . H 7 HOH A 46 346 13 HOH HOH . H 7 HOH A 47 347 15 HOH HOH . H 7 HOH A 48 348 135 HOH HOH . H 7 HOH A 49 349 92 HOH HOH . H 7 HOH A 50 350 18 HOH HOH . H 7 HOH A 51 351 8 HOH HOH . H 7 HOH A 52 352 6 HOH HOH . H 7 HOH A 53 353 143 HOH HOH . H 7 HOH A 54 354 117 HOH HOH . H 7 HOH A 55 355 62 HOH HOH . H 7 HOH A 56 356 85 HOH HOH . H 7 HOH A 57 357 131 HOH HOH . H 7 HOH A 58 358 132 HOH HOH . H 7 HOH A 59 359 102 HOH HOH . H 7 HOH A 60 360 137 HOH HOH . H 7 HOH A 61 361 7 HOH HOH . H 7 HOH A 62 362 71 HOH HOH . H 7 HOH A 63 363 24 HOH HOH . H 7 HOH A 64 364 44 HOH HOH . H 7 HOH A 65 365 97 HOH HOH . H 7 HOH A 66 366 35 HOH HOH . H 7 HOH A 67 367 96 HOH HOH . H 7 HOH A 68 368 111 HOH HOH . H 7 HOH A 69 369 28 HOH HOH . H 7 HOH A 70 370 29 HOH HOH . H 7 HOH A 71 371 4 HOH HOH . H 7 HOH A 72 372 90 HOH HOH . H 7 HOH A 73 373 25 HOH HOH . H 7 HOH A 74 374 58 HOH HOH . H 7 HOH A 75 375 80 HOH HOH . H 7 HOH A 76 376 11 HOH HOH . H 7 HOH A 77 377 113 HOH HOH . H 7 HOH A 78 378 52 HOH HOH . H 7 HOH A 79 379 60 HOH HOH . H 7 HOH A 80 380 55 HOH HOH . H 7 HOH A 81 381 33 HOH HOH . H 7 HOH A 82 382 146 HOH HOH . H 7 HOH A 83 383 104 HOH HOH . H 7 HOH A 84 384 48 HOH HOH . H 7 HOH A 85 385 134 HOH HOH . H 7 HOH A 86 386 3 HOH HOH . H 7 HOH A 87 387 68 HOH HOH . H 7 HOH A 88 388 89 HOH HOH . H 7 HOH A 89 389 63 HOH HOH . H 7 HOH A 90 390 70 HOH HOH . H 7 HOH A 91 391 34 HOH HOH . H 7 HOH A 92 392 123 HOH HOH . H 7 HOH A 93 393 46 HOH HOH . H 7 HOH A 94 394 40 HOH HOH . H 7 HOH A 95 395 30 HOH HOH . H 7 HOH A 96 396 95 HOH HOH . H 7 HOH A 97 397 133 HOH HOH . H 7 HOH A 98 398 126 HOH HOH . H 7 HOH A 99 399 130 HOH HOH . H 7 HOH A 100 400 101 HOH HOH . H 7 HOH A 101 401 87 HOH HOH . H 7 HOH A 102 402 2 HOH HOH . H 7 HOH A 103 403 9 HOH HOH . H 7 HOH A 104 404 120 HOH HOH . H 7 HOH A 105 405 115 HOH HOH . H 7 HOH A 106 406 31 HOH HOH . H 7 HOH A 107 407 32 HOH HOH . H 7 HOH A 108 408 66 HOH HOH . H 7 HOH A 109 409 47 HOH HOH . H 7 HOH A 110 410 39 HOH HOH . H 7 HOH A 111 411 141 HOH HOH . H 7 HOH A 112 412 50 HOH HOH . H 7 HOH A 113 413 17 HOH HOH . H 7 HOH A 114 414 69 HOH HOH . H 7 HOH A 115 415 56 HOH HOH . H 7 HOH A 116 416 22 HOH HOH . H 7 HOH A 117 417 125 HOH HOH . H 7 HOH A 118 418 140 HOH HOH . H 7 HOH A 119 419 74 HOH HOH . H 7 HOH A 120 420 139 HOH HOH . H 7 HOH A 121 421 59 HOH HOH . H 7 HOH A 122 422 145 HOH HOH . H 7 HOH A 123 423 98 HOH HOH . H 7 HOH A 124 424 122 HOH HOH . H 7 HOH A 125 425 88 HOH HOH . H 7 HOH A 126 426 138 HOH HOH . H 7 HOH A 127 427 26 HOH HOH . H 7 HOH A 128 428 103 HOH HOH . H 7 HOH A 129 429 127 HOH HOH . H 7 HOH A 130 430 93 HOH HOH . H 7 HOH A 131 431 128 HOH HOH . H 7 HOH A 132 432 51 HOH HOH . H 7 HOH A 133 433 57 HOH HOH . H 7 HOH A 134 434 38 HOH HOH . H 7 HOH A 135 435 151 HOH HOH . H 7 HOH A 136 436 107 HOH HOH . H 7 HOH A 137 437 106 HOH HOH . H 7 HOH A 138 438 129 HOH HOH . H 7 HOH A 139 439 75 HOH HOH . H 7 HOH A 140 440 108 HOH HOH . H 7 HOH A 141 441 154 HOH HOH . H 7 HOH A 142 442 152 HOH HOH . H 7 HOH A 143 443 149 HOH HOH . H 7 HOH A 144 444 77 HOH HOH . H 7 HOH A 145 445 153 HOH HOH . H 7 HOH A 146 446 112 HOH HOH . H 7 HOH A 147 447 161 HOH HOH . H 7 HOH A 148 448 150 HOH HOH . H 7 HOH A 149 449 81 HOH HOH . H 7 HOH A 150 450 147 HOH HOH . H 7 HOH A 151 451 109 HOH HOH . H 7 HOH A 152 452 105 HOH HOH . H 7 HOH A 153 453 157 HOH HOH . H 7 HOH A 154 454 155 HOH HOH . H 7 HOH A 155 455 23 HOH HOH . H 7 HOH A 156 456 100 HOH HOH . H 7 HOH A 157 457 156 HOH HOH . H 7 HOH A 158 458 67 HOH HOH . H 7 HOH A 159 459 110 HOH HOH . H 7 HOH A 160 460 148 HOH HOH . H 7 HOH A 161 461 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 5 5.589 6.796 2.482 1 40.72 ? C1 PGE 205 A 1 HETATM 2 O O1 PGE . . . F 5 5.593 6.114 1.195 1 37.74 ? O1 PGE 205 A 1 HETATM 3 C C2 PGE . . . F 5 6.915 6.691 3.228 1 38.92 ? C2 PGE 205 A 1 HETATM 4 O O2 PGE . . . F 5 8.067 6.869 2.394 1 37.65 ? O2 PGE 205 A 1 HETATM 5 C C3 PGE . . . F 5 9.289 6.303 2.955 1 36.98 ? C3 PGE 205 A 1 HETATM 6 C C4 PGE . . . F 5 10.561 6.391 2.109 1 36.54 ? C4 PGE 205 A 1 HETATM 7 O O4 PGE . . . F 5 9.993 6.91 -1.787 1 43.63 ? O4 PGE 205 A 1 HETATM 8 C C6 PGE . . . F 5 10.985 5.923 -1.489 1 41.16 ? C6 PGE 205 A 1 HETATM 9 C C5 PGE . . . F 5 11.319 6.002 -0.027 1 40.21 ? C5 PGE 205 A 1 HETATM 10 O O3 PGE . . . F 5 10.155 6.269 0.765 1 35.5 ? O3 PGE 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #