data_5CCC # _model_server_result.job_id Z1Ps3RMB18lnT76IdzZL6Q _model_server_result.datetime_utc '2024-11-27 23:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ccc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5CCC # _exptl.entry_id 5CCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,10-DIDEAZATETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CCC _cell.length_a 34.131 _cell.length_b 58.199 _cell.length_c 75.212 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id DDF _chem_comp.mon_nstd_flag . _chem_comp.name '5,10-DIDEAZATETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DDF sing 83 n y N1 C8A DDF sing 84 n y N1 HN1 DDF sing 85 n n C2 NA2 DDF sing 86 n n C2 N3 DDF doub 87 n y NA2 HN21 DDF sing 88 n n NA2 HN22 DDF sing 89 n n N3 C4 DDF sing 90 n y C4 O4 DDF doub 91 n n C4 C4A DDF sing 92 n y C4A C5 DDF sing 93 n n C4A C8A DDF doub 94 n y C5 C6 DDF sing 95 n n C5 H51 DDF sing 96 n n C5 H52 DDF sing 97 n n C6 C7 DDF sing 98 n n C6 C9 DDF sing 99 n n C6 H6 DDF sing 100 n n C7 N8 DDF sing 101 n n C7 H71 DDF sing 102 n n C7 H72 DDF sing 103 n n N8 C8A DDF sing 104 n n N8 HN8 DDF sing 105 n n C9 C10 DDF sing 106 n n C9 H91 DDF sing 107 n n C9 H92 DDF sing 108 n n C10 C14 DDF sing 109 n n C10 H101 DDF sing 110 n n C10 H102 DDF sing 111 n n C11 C12 DDF doub 112 n y C11 C16 DDF sing 113 n y C11 C DDF sing 114 n n C12 C13 DDF sing 115 n y C12 H12 DDF sing 116 n n C13 C14 DDF doub 117 n y C13 H13 DDF sing 118 n n C14 C15 DDF sing 119 n y C15 C16 DDF doub 120 n y C15 H15 DDF sing 121 n n C16 H16 DDF sing 122 n n C O DDF doub 123 n n C N DDF sing 124 n n N CA DDF sing 125 n n N HN DDF sing 126 n n CA CB DDF sing 127 n n CA CT DDF sing 128 n n CA HA DDF sing 129 n n CB CG DDF sing 130 n n CB HB1 DDF sing 131 n n CB HB2 DDF sing 132 n n CG CD DDF sing 133 n n CG HG1 DDF sing 134 n n CG HG2 DDF sing 135 n n CD OE1 DDF doub 136 n n CD OE2 DDF sing 137 n n OE2 HOE2 DDF sing 138 n n CT O1 DDF doub 139 n n CT O2 DDF sing 140 n n O2 HO2 DDF sing 141 n n # _atom_sites.entry_id 5CCC _atom_sites.fract_transf_matrix[1][1] 0.029299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 201 1 DDF DDF . C 3 NAP A 1 202 1 NAP NAP . D 4 HOH A 1 301 129 HOH HOH . D 4 HOH A 2 302 128 HOH HOH . D 4 HOH A 3 303 13 HOH HOH . D 4 HOH A 4 304 119 HOH HOH . D 4 HOH A 5 305 11 HOH HOH . D 4 HOH A 6 306 90 HOH HOH . D 4 HOH A 7 307 106 HOH HOH . D 4 HOH A 8 308 124 HOH HOH . D 4 HOH A 9 309 76 HOH HOH . D 4 HOH A 10 310 5 HOH HOH . D 4 HOH A 11 311 84 HOH HOH . D 4 HOH A 12 312 28 HOH HOH . D 4 HOH A 13 313 24 HOH HOH . D 4 HOH A 14 314 39 HOH HOH . D 4 HOH A 15 315 53 HOH HOH . D 4 HOH A 16 316 146 HOH HOH . D 4 HOH A 17 317 64 HOH HOH . D 4 HOH A 18 318 51 HOH HOH . D 4 HOH A 19 319 61 HOH HOH . D 4 HOH A 20 320 77 HOH HOH . D 4 HOH A 21 321 18 HOH HOH . D 4 HOH A 22 322 97 HOH HOH . D 4 HOH A 23 323 68 HOH HOH . D 4 HOH A 24 324 21 HOH HOH . D 4 HOH A 25 325 4 HOH HOH . D 4 HOH A 26 326 115 HOH HOH . D 4 HOH A 27 327 118 HOH HOH . D 4 HOH A 28 328 98 HOH HOH . D 4 HOH A 29 329 93 HOH HOH . D 4 HOH A 30 330 69 HOH HOH . D 4 HOH A 31 331 22 HOH HOH . D 4 HOH A 32 332 81 HOH HOH . D 4 HOH A 33 333 8 HOH HOH . D 4 HOH A 34 334 55 HOH HOH . D 4 HOH A 35 335 12 HOH HOH . D 4 HOH A 36 336 1 HOH HOH . D 4 HOH A 37 337 20 HOH HOH . D 4 HOH A 38 338 104 HOH HOH . D 4 HOH A 39 339 103 HOH HOH . D 4 HOH A 40 340 27 HOH HOH . D 4 HOH A 41 341 127 HOH HOH . D 4 HOH A 42 342 86 HOH HOH . D 4 HOH A 43 343 59 HOH HOH . D 4 HOH A 44 344 34 HOH HOH . D 4 HOH A 45 345 95 HOH HOH . D 4 HOH A 46 346 45 HOH HOH . D 4 HOH A 47 347 19 HOH HOH . D 4 HOH A 48 348 46 HOH HOH . D 4 HOH A 49 349 25 HOH HOH . D 4 HOH A 50 350 32 HOH HOH . D 4 HOH A 51 351 91 HOH HOH . D 4 HOH A 52 352 130 HOH HOH . D 4 HOH A 53 353 3 HOH HOH . D 4 HOH A 54 354 133 HOH HOH . D 4 HOH A 55 355 60 HOH HOH . D 4 HOH A 56 356 30 HOH HOH . D 4 HOH A 57 357 107 HOH HOH . D 4 HOH A 58 358 89 HOH HOH . D 4 HOH A 59 359 142 HOH HOH . D 4 HOH A 60 360 43 HOH HOH . D 4 HOH A 61 361 36 HOH HOH . D 4 HOH A 62 362 85 HOH HOH . D 4 HOH A 63 363 29 HOH HOH . D 4 HOH A 64 364 99 HOH HOH . D 4 HOH A 65 365 10 HOH HOH . D 4 HOH A 66 366 44 HOH HOH . D 4 HOH A 67 367 139 HOH HOH . D 4 HOH A 68 368 17 HOH HOH . D 4 HOH A 69 369 40 HOH HOH . D 4 HOH A 70 370 38 HOH HOH . D 4 HOH A 71 371 52 HOH HOH . D 4 HOH A 72 372 2 HOH HOH . D 4 HOH A 73 373 100 HOH HOH . D 4 HOH A 74 374 83 HOH HOH . D 4 HOH A 75 375 31 HOH HOH . D 4 HOH A 76 376 109 HOH HOH . D 4 HOH A 77 377 37 HOH HOH . D 4 HOH A 78 378 58 HOH HOH . D 4 HOH A 79 379 117 HOH HOH . D 4 HOH A 80 380 92 HOH HOH . D 4 HOH A 81 381 16 HOH HOH . D 4 HOH A 82 382 42 HOH HOH . D 4 HOH A 83 383 7 HOH HOH . D 4 HOH A 84 384 57 HOH HOH . D 4 HOH A 85 385 132 HOH HOH . D 4 HOH A 86 386 6 HOH HOH . D 4 HOH A 87 387 50 HOH HOH . D 4 HOH A 88 388 96 HOH HOH . D 4 HOH A 89 389 48 HOH HOH . D 4 HOH A 90 390 9 HOH HOH . D 4 HOH A 91 391 26 HOH HOH . D 4 HOH A 92 392 120 HOH HOH . D 4 HOH A 93 393 54 HOH HOH . D 4 HOH A 94 394 33 HOH HOH . D 4 HOH A 95 395 143 HOH HOH . D 4 HOH A 96 396 88 HOH HOH . D 4 HOH A 97 397 80 HOH HOH . D 4 HOH A 98 398 79 HOH HOH . D 4 HOH A 99 399 15 HOH HOH . D 4 HOH A 100 400 49 HOH HOH . D 4 HOH A 101 401 135 HOH HOH . D 4 HOH A 102 402 94 HOH HOH . D 4 HOH A 103 403 145 HOH HOH . D 4 HOH A 104 404 35 HOH HOH . D 4 HOH A 105 405 73 HOH HOH . D 4 HOH A 106 406 14 HOH HOH . D 4 HOH A 107 407 82 HOH HOH . D 4 HOH A 108 408 108 HOH HOH . D 4 HOH A 109 409 74 HOH HOH . D 4 HOH A 110 410 72 HOH HOH . D 4 HOH A 111 411 114 HOH HOH . D 4 HOH A 112 412 87 HOH HOH . D 4 HOH A 113 413 75 HOH HOH . D 4 HOH A 114 414 56 HOH HOH . D 4 HOH A 115 415 125 HOH HOH . D 4 HOH A 116 416 137 HOH HOH . D 4 HOH A 117 417 113 HOH HOH . D 4 HOH A 118 418 116 HOH HOH . D 4 HOH A 119 419 101 HOH HOH . D 4 HOH A 120 420 134 HOH HOH . D 4 HOH A 121 421 111 HOH HOH . D 4 HOH A 122 422 121 HOH HOH . D 4 HOH A 123 423 41 HOH HOH . D 4 HOH A 124 424 123 HOH HOH . D 4 HOH A 125 425 66 HOH HOH . D 4 HOH A 126 426 70 HOH HOH . D 4 HOH A 127 427 47 HOH HOH . D 4 HOH A 128 428 65 HOH HOH . D 4 HOH A 129 429 23 HOH HOH . D 4 HOH A 130 430 126 HOH HOH . D 4 HOH A 131 431 63 HOH HOH . D 4 HOH A 132 432 71 HOH HOH . D 4 HOH A 133 433 78 HOH HOH . D 4 HOH A 134 434 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDF . . . B 2 18.97 2.154 -9.827 1 22.1 ? N1 DDF 201 A 1 HETATM 2 C C2 DDF . . . B 2 19.819 3.172 -9.544 1 22.72 ? C2 DDF 201 A 1 HETATM 3 N NA2 DDF . . . B 2 19.293 4.393 -9.431 1 22.6 ? NA2 DDF 201 A 1 HETATM 4 N N3 DDF . . . B 2 21.124 2.993 -9.389 1 23.58 ? N3 DDF 201 A 1 HETATM 5 C C4 DDF . . . B 2 21.7 1.752 -9.535 1 26.16 ? C4 DDF 201 A 1 HETATM 6 O O4 DDF . . . B 2 22.924 1.608 -9.394 1 30.99 ? O4 DDF 201 A 1 HETATM 7 C C4A DDF . . . B 2 20.817 0.625 -9.834 1 27.17 ? C4A DDF 201 A 1 HETATM 8 C C5 DDF . . . B 2 21.341 -0.765 -10.075 1 27.23 ? C5 DDF 201 A 1 HETATM 9 C C6 DDF . . . B 2 20.284 -1.804 -9.703 1 30.42 ? C6 DDF 201 A 1 HETATM 10 C C7 DDF . . . B 2 18.963 -1.453 -10.387 1 26.99 ? C7 DDF 201 A 1 HETATM 11 N N8 DDF . . . B 2 18.592 -0.05 -10.233 1 24.92 ? N8 DDF 201 A 1 HETATM 12 C C8A DDF . . . B 2 19.482 0.899 -9.96 1 24.69 ? C8A DDF 201 A 1 HETATM 13 C C9 DDF . . . B 2 20.18 -1.794 -8.228 1 32.33 ? C9 DDF 201 A 1 HETATM 14 C C10 DDF . . . B 2 21.421 -2.466 -7.646 1 37.43 ? C10 DDF 201 A 1 HETATM 15 C C11 DDF . . . B 2 21.924 -1.642 -3.479 1 51.05 ? C11 DDF 201 A 1 HETATM 16 C C12 DDF . . . B 2 22.981 -2.113 -4.239 1 49.27 ? C12 DDF 201 A 1 HETATM 17 C C13 DDF . . . B 2 22.809 -2.382 -5.579 1 46.27 ? C13 DDF 201 A 1 HETATM 18 C C14 DDF . . . B 2 21.578 -2.205 -6.187 1 42.17 ? C14 DDF 201 A 1 HETATM 19 C C15 DDF . . . B 2 20.535 -1.712 -5.433 1 44.17 ? C15 DDF 201 A 1 HETATM 20 C C16 DDF . . . B 2 20.698 -1.441 -4.094 1 46.21 ? C16 DDF 201 A 1 HETATM 21 C C DDF . . . B 2 22.01 -1.312 -2.033 1 57.16 ? C DDF 201 A 1 HETATM 22 O O DDF . . . B 2 22.663 -1.987 -1.239 1 59.95 ? O DDF 201 A 1 HETATM 23 N N DDF . . . B 2 21.345 -0.202 -1.705 1 55.37 ? N DDF 201 A 1 HETATM 24 C CA DDF . . . B 2 21.252 0.295 -0.352 1 57.43 ? CA DDF 201 A 1 HETATM 25 C CB DDF . . . B 2 22.133 1.528 -0.185 1 62.07 ? CB DDF 201 A 1 HETATM 26 C CG DDF . . . B 2 23.617 1.215 -0.339 1 65.83 ? CG DDF 201 A 1 HETATM 27 C CD DDF . . . B 2 24.413 1.64 0.858 1 68.52 ? CD DDF 201 A 1 HETATM 28 O OE1 DDF . . . B 2 24.076 1.389 1.996 1 70.43 ? OE1 DDF 201 A 1 HETATM 29 O OE2 DDF . . . B 2 25.496 2.297 0.554 1 69.32 ? OE2 DDF 201 A 1 HETATM 30 C CT DDF . . . B 2 19.796 0.601 -0.047 1 54.51 ? CT DDF 201 A 1 HETATM 31 O O1 DDF . . . B 2 19.034 1.01 -0.904 1 51.7 ? O1 DDF 201 A 1 HETATM 32 O O2 DDF . . . B 2 19.46 0.369 1.189 1 55.14 ? O2 DDF 201 A 1 HETATM 33 H HN1 DDF . . . B 2 17.97 2.302 -9.921 1 26.52 ? HN1 DDF 201 A 1 HETATM 34 H HN21 DDF . . . B 2 18.288 4.509 -9.514 1 27.12 ? HN21 DDF 201 A 1 HETATM 35 H HN22 DDF . . . B 2 19.832 5.222 -9.201 1 27.12 ? HN22 DDF 201 A 1 HETATM 36 H H51 DDF . . . B 2 21.629 -0.881 -11.119 1 32.67 ? H51 DDF 201 A 1 HETATM 37 H H52 DDF . . . B 2 22.255 -0.914 -9.503 1 32.67 ? H52 DDF 201 A 1 HETATM 38 H H6 DDF . . . B 2 20.618 -2.784 -10.039 1 36.51 ? H6 DDF 201 A 1 HETATM 39 H H71 DDF . . . B 2 19.007 -1.701 -11.446 1 32.39 ? H71 DDF 201 A 1 HETATM 40 H H72 DDF . . . B 2 18.146 -2.045 -9.977 1 32.39 ? H72 DDF 201 A 1 HETATM 41 H HN8 DDF . . . B 2 17.605 0.169 -10.322 1 29.9 ? HN8 DDF 201 A 1 HETATM 42 H H91 DDF . . . B 2 20.099 -0.772 -7.86 1 38.8 ? H91 DDF 201 A 1 HETATM 43 H H92 DDF . . . B 2 19.275 -2.298 -7.892 1 38.8 ? H92 DDF 201 A 1 HETATM 44 H H101 DDF . . . B 2 21.397 -3.544 -7.799 1 44.92 ? H101 DDF 201 A 1 HETATM 45 H H102 DDF . . . B 2 22.308 -2.127 -8.179 1 44.92 ? H102 DDF 201 A 1 HETATM 46 H H12 DDF . . . B 2 23.951 -2.273 -3.77 1 59.13 ? H12 DDF 201 A 1 HETATM 47 H H13 DDF . . . B 2 23.655 -2.755 -6.155 1 55.52 ? H13 DDF 201 A 1 HETATM 48 H H15 DDF . . . B 2 19.563 -1.55 -5.897 1 53 ? H15 DDF 201 A 1 HETATM 49 H H16 DDF . . . B 2 19.837 -1.069 -3.54 1 55.46 ? H16 DDF 201 A 1 HETATM 50 H HN DDF . . . B 2 20.864 0.355 -2.405 1 66.44 ? HN DDF 201 A 1 HETATM 51 H HA DDF . . . B 2 21.57 -0.457 0.369 1 68.92 ? HA DDF 201 A 1 HETATM 52 H HB1 DDF . . . B 2 21.958 2.013 0.774 1 74.48 ? HB1 DDF 201 A 1 HETATM 53 H HB2 DDF . . . B 2 21.842 2.281 -0.916 1 74.48 ? HB2 DDF 201 A 1 HETATM 54 H HG1 DDF . . . B 2 23.764 0.148 -0.5 1 79 ? HG1 DDF 201 A 1 HETATM 55 H HG2 DDF . . . B 2 24.033 1.705 -1.218 1 79 ? HG2 DDF 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 55 #