data_5CCE # _model_server_result.job_id fV3QLJ0v-7mRuwLddoAW5A _model_server_result.datetime_utc '2025-06-19 01:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5CCE # loop_ _exptl.entry_id _exptl.method 5CCE 'NEUTRON DIFFRACTION' 5CCE 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CCE _cell.length_a 83.189 _cell.length_b 83.189 _cell.length_c 67.633 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 45.088667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 35 n y N9 C4 ADE sing 36 n y N9 HN9 ADE sing 37 n n C8 N7 ADE doub 38 n y C8 H8 ADE sing 39 n n N7 C5 ADE sing 40 n y C5 C6 ADE sing 41 n y C5 C4 ADE doub 42 n y C6 N6 ADE sing 43 n n C6 N1 ADE doub 44 n y N6 HN61 ADE sing 45 n n N6 HN62 ADE sing 46 n n N1 C2 ADE sing 47 n y C2 N3 ADE doub 48 n y C2 H2 ADE sing 49 n n N3 C4 ADE sing 50 n y # _atom_sites.entry_id 5CCE _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0.00694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2WP A 1 301 301 2WP 2WP . C 3 ADE A 1 302 302 ADE ADE . D 4 D8U A 1 303 501 D8U D8U . E 5 DOD A 1 401 1092 DOD DOD . E 5 DOD A 2 402 1064 DOD DOD . E 5 DOD A 3 403 1046 DOD DOD . E 5 DOD A 4 404 1056 DOD DOD . E 5 DOD A 5 405 1018 DOD DOD . E 5 DOD A 6 406 1067 DOD DOD . E 5 DOD A 7 407 1020 DOD DOD . E 5 DOD A 8 408 1058 DOD DOD . E 5 DOD A 9 409 1023 DOD DOD . E 5 DOD A 10 410 1041 DOD DOD . E 5 DOD A 11 411 1083 DOD DOD . E 5 DOD A 12 412 1007 DOD DOD . E 5 DOD A 13 413 1011 DOD DOD . E 5 DOD A 14 414 1071 DOD DOD . E 5 DOD A 15 415 1005 DOD DOD . E 5 DOD A 16 416 1002 DOD DOD . E 5 DOD A 17 417 1069 DOD DOD . E 5 DOD A 18 418 1001 DOD DOD . E 5 DOD A 19 419 1006 DOD DOD . E 5 DOD A 20 420 1022 DOD DOD . E 5 DOD A 21 421 1032 DOD DOD . E 5 DOD A 22 422 1015 DOD DOD . E 5 DOD A 23 423 1021 DOD DOD . E 5 DOD A 24 424 1014 DOD DOD . E 5 DOD A 25 425 1047 DOD DOD . E 5 DOD A 26 426 1091 DOD DOD . E 5 DOD A 27 427 1054 DOD DOD . E 5 DOD A 28 428 1003 DOD DOD . E 5 DOD A 29 429 1016 DOD DOD . E 5 DOD A 30 430 1008 DOD DOD . E 5 DOD A 31 431 1082 DOD DOD . E 5 DOD A 32 432 1013 DOD DOD . E 5 DOD A 33 433 1040 DOD DOD . E 5 DOD A 34 434 1070 DOD DOD . E 5 DOD A 35 435 1017 DOD DOD . E 5 DOD A 36 436 1035 DOD DOD . E 5 DOD A 37 437 1061 DOD DOD . E 5 DOD A 38 438 1030 DOD DOD . E 5 DOD A 39 439 1027 DOD DOD . E 5 DOD A 40 440 1012 DOD DOD . E 5 DOD A 41 441 1045 DOD DOD . E 5 DOD A 42 442 1004 DOD DOD . E 5 DOD A 43 443 1081 DOD DOD . E 5 DOD A 44 444 1009 DOD DOD . E 5 DOD A 45 445 1034 DOD DOD . E 5 DOD A 46 446 1087 DOD DOD . E 5 DOD A 47 447 1039 DOD DOD . E 5 DOD A 48 448 1028 DOD DOD . E 5 DOD A 49 449 1025 DOD DOD . E 5 DOD A 50 450 1024 DOD DOD . E 5 DOD A 51 451 1088 DOD DOD . E 5 DOD A 52 452 1052 DOD DOD . E 5 DOD A 53 453 1019 DOD DOD . E 5 DOD A 54 454 1051 DOD DOD . E 5 DOD A 55 455 1010 DOD DOD . E 5 DOD A 56 456 1089 DOD DOD . E 5 DOD A 57 457 1038 DOD DOD . E 5 DOD A 58 458 1090 DOD DOD . E 5 DOD A 59 459 1026 DOD DOD . E 5 DOD A 60 460 1044 DOD DOD . E 5 DOD A 61 461 1068 DOD DOD . E 5 DOD A 62 462 1063 DOD DOD . E 5 DOD A 63 463 1033 DOD DOD . E 5 DOD A 64 464 1043 DOD DOD . E 5 DOD A 65 465 1042 DOD DOD . E 5 DOD A 66 466 1036 DOD DOD . E 5 DOD A 67 467 1037 DOD DOD . E 5 DOD A 68 468 1031 DOD DOD . E 5 DOD A 69 469 1086 DOD DOD . E 5 DOD A 70 470 1085 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 25.807 -39.42 8.219 1 21.77 ? N9 ADE 302 A 1 HETATM 2 C C8 ADE . . . C 3 26.289 -39.85 7.028 1 21.06 ? C8 ADE 302 A 1 HETATM 3 N N7 ADE . . . C 3 26.821 -41.05 7.087 1 20.55 ? N7 ADE 302 A 1 HETATM 4 C C5 ADE . . . C 3 26.684 -41.427 8.405 1 21.75 ? C5 ADE 302 A 1 HETATM 5 C C6 ADE . . . C 3 27.054 -42.603 9.104 1 22.29 ? C6 ADE 302 A 1 HETATM 6 N N6 ADE . . . C 3 27.668 -43.644 8.493 1 23.69 ? N6 ADE 302 A 1 HETATM 7 N N1 ADE . . . C 3 26.776 -42.686 10.46 1 19.25 ? N1 ADE 302 A 1 HETATM 8 C C2 ADE . . . C 3 26.163 -41.633 11.035 1 18.5 ? C2 ADE 302 A 1 HETATM 9 N N3 ADE . . . C 3 25.767 -40.479 10.481 1 19.5 ? N3 ADE 302 A 1 HETATM 10 C C4 ADE . . . C 3 26.056 -40.426 9.14 1 21.51 ? C4 ADE 302 A 1 HETATM 11 D DN9 ADE . . . C 3 25.425 -38.662 8.382 1 24.16 ? DN9 ADE 302 A 1 HETATM 12 H H8 ADE . . . C 3 26.242 -39.351 6.247 1 22.99 ? H8 ADE 302 A 1 HETATM 13 D DN61 ADE . . . C 3 27.88 -44.348 8.945 1 23.16 ? DN61 ADE 302 A 1 HETATM 14 D DN62 ADE . . . C 3 27.845 -43.604 7.649 1 24.56 ? DN62 ADE 302 A 1 HETATM 15 H H2 ADE . . . C 3 25.988 -41.722 11.951 1 18.65 ? H2 ADE 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #