data_5CCQ # _model_server_result.job_id u6LirxKOSKe7gZN6b2tstA _model_server_result.datetime_utc '2025-01-15 17:00:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ccq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5CCQ # _exptl.entry_id 5CCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CCQ _cell.length_a 57.46 _cell.length_b 57.46 _cell.length_c 113.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 6 A TYR 7 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.242 ? metalc ? metalc2 A OD1 ASP 159 A ASP 160 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc3 A O CYS 160 A CYS 161 1_555 C K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc4 B K K . A K 201 1_555 F O4 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc5 B K K . A K 201 1_555 F O1 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc6 B K K . A K 201 1_555 F O2 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc7 B K K . A K 201 1_555 F O3 PGE . A PGE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc8 B K K . A K 201 1_555 F O1 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc9 B K K . A K 201 1_555 F O2 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc10 B K K . A K 201 1_555 F O3 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc11 B K K . A K 201 1_555 F O4 PGE . A PGE 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc12 C K K . A K 202 1_555 D O1 FMT . A FMT 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc13 C K K . A K 202 1_555 H O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 275 n n O1 HO1 PG4 sing 276 n n C1 C2 PG4 sing 277 n n C1 H11 PG4 sing 278 n n C1 H12 PG4 sing 279 n n C2 O2 PG4 sing 280 n n C2 H21 PG4 sing 281 n n C2 H22 PG4 sing 282 n n O2 C3 PG4 sing 283 n n C3 C4 PG4 sing 284 n n C3 H31 PG4 sing 285 n n C3 H32 PG4 sing 286 n n C4 O3 PG4 sing 287 n n C4 H41 PG4 sing 288 n n C4 H42 PG4 sing 289 n n O3 C5 PG4 sing 290 n n C5 C6 PG4 sing 291 n n C5 H51 PG4 sing 292 n n C5 H52 PG4 sing 293 n n C6 O4 PG4 sing 294 n n C6 H61 PG4 sing 295 n n C6 H62 PG4 sing 296 n n O4 C7 PG4 sing 297 n n C7 C8 PG4 sing 298 n n C7 H71 PG4 sing 299 n n C7 H72 PG4 sing 300 n n C8 O5 PG4 sing 301 n n C8 H81 PG4 sing 302 n n C8 H82 PG4 sing 303 n n O5 HO5 PG4 sing 304 n n # _atom_sites.entry_id 5CCQ _atom_sites.fract_transf_matrix[1][1] 0.017403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 201 1 K K . C 2 K A 1 202 2 K K . D 3 FMT A 1 203 1 FMT FMT . E 4 PG4 A 1 204 1 PG4 PG4 . F 5 PGE A 1 205 1 PGE PGE . G 6 502 A 1 206 1 502 Z21 . H 7 HOH A 1 301 108 HOH HOH . H 7 HOH A 2 302 40 HOH HOH . H 7 HOH A 3 303 79 HOH HOH . H 7 HOH A 4 304 80 HOH HOH . H 7 HOH A 5 305 52 HOH HOH . H 7 HOH A 6 306 110 HOH HOH . H 7 HOH A 7 307 111 HOH HOH . H 7 HOH A 8 308 41 HOH HOH . H 7 HOH A 9 309 16 HOH HOH . H 7 HOH A 10 310 93 HOH HOH . H 7 HOH A 11 311 137 HOH HOH . H 7 HOH A 12 312 20 HOH HOH . H 7 HOH A 13 313 61 HOH HOH . H 7 HOH A 14 314 114 HOH HOH . H 7 HOH A 15 315 119 HOH HOH . H 7 HOH A 16 316 115 HOH HOH . H 7 HOH A 17 317 78 HOH HOH . H 7 HOH A 18 318 138 HOH HOH . H 7 HOH A 19 319 14 HOH HOH . H 7 HOH A 20 320 35 HOH HOH . H 7 HOH A 21 321 132 HOH HOH . H 7 HOH A 22 322 128 HOH HOH . H 7 HOH A 23 323 1 HOH HOH . H 7 HOH A 24 324 77 HOH HOH . H 7 HOH A 25 325 109 HOH HOH . H 7 HOH A 26 326 8 HOH HOH . H 7 HOH A 27 327 21 HOH HOH . H 7 HOH A 28 328 43 HOH HOH . H 7 HOH A 29 329 51 HOH HOH . H 7 HOH A 30 330 135 HOH HOH . H 7 HOH A 31 331 91 HOH HOH . H 7 HOH A 32 332 5 HOH HOH . H 7 HOH A 33 333 81 HOH HOH . H 7 HOH A 34 334 62 HOH HOH . H 7 HOH A 35 335 124 HOH HOH . H 7 HOH A 36 336 19 HOH HOH . H 7 HOH A 37 337 86 HOH HOH . H 7 HOH A 38 338 58 HOH HOH . H 7 HOH A 39 339 69 HOH HOH . H 7 HOH A 40 340 7 HOH HOH . H 7 HOH A 41 341 31 HOH HOH . H 7 HOH A 42 342 130 HOH HOH . H 7 HOH A 43 343 106 HOH HOH . H 7 HOH A 44 344 46 HOH HOH . H 7 HOH A 45 345 12 HOH HOH . H 7 HOH A 46 346 118 HOH HOH . H 7 HOH A 47 347 74 HOH HOH . H 7 HOH A 48 348 39 HOH HOH . H 7 HOH A 49 349 50 HOH HOH . H 7 HOH A 50 350 131 HOH HOH . H 7 HOH A 51 351 18 HOH HOH . H 7 HOH A 52 352 10 HOH HOH . H 7 HOH A 53 353 24 HOH HOH . H 7 HOH A 54 354 34 HOH HOH . H 7 HOH A 55 355 75 HOH HOH . H 7 HOH A 56 356 71 HOH HOH . H 7 HOH A 57 357 42 HOH HOH . H 7 HOH A 58 358 15 HOH HOH . H 7 HOH A 59 359 37 HOH HOH . H 7 HOH A 60 360 103 HOH HOH . H 7 HOH A 61 361 27 HOH HOH . H 7 HOH A 62 362 67 HOH HOH . H 7 HOH A 63 363 13 HOH HOH . H 7 HOH A 64 364 48 HOH HOH . H 7 HOH A 65 365 3 HOH HOH . H 7 HOH A 66 366 85 HOH HOH . H 7 HOH A 67 367 116 HOH HOH . H 7 HOH A 68 368 73 HOH HOH . H 7 HOH A 69 369 32 HOH HOH . H 7 HOH A 70 370 4 HOH HOH . H 7 HOH A 71 371 96 HOH HOH . H 7 HOH A 72 372 33 HOH HOH . H 7 HOH A 73 373 54 HOH HOH . H 7 HOH A 74 374 6 HOH HOH . H 7 HOH A 75 375 47 HOH HOH . H 7 HOH A 76 376 59 HOH HOH . H 7 HOH A 77 377 56 HOH HOH . H 7 HOH A 78 378 65 HOH HOH . H 7 HOH A 79 379 136 HOH HOH . H 7 HOH A 80 380 11 HOH HOH . H 7 HOH A 81 381 95 HOH HOH . H 7 HOH A 82 382 107 HOH HOH . H 7 HOH A 83 383 139 HOH HOH . H 7 HOH A 84 384 60 HOH HOH . H 7 HOH A 85 385 36 HOH HOH . H 7 HOH A 86 386 38 HOH HOH . H 7 HOH A 87 387 66 HOH HOH . H 7 HOH A 88 388 117 HOH HOH . H 7 HOH A 89 389 90 HOH HOH . H 7 HOH A 90 390 70 HOH HOH . H 7 HOH A 91 391 29 HOH HOH . H 7 HOH A 92 392 2 HOH HOH . H 7 HOH A 93 393 30 HOH HOH . H 7 HOH A 94 394 84 HOH HOH . H 7 HOH A 95 395 133 HOH HOH . H 7 HOH A 96 396 53 HOH HOH . H 7 HOH A 97 397 44 HOH HOH . H 7 HOH A 98 398 17 HOH HOH . H 7 HOH A 99 399 87 HOH HOH . H 7 HOH A 100 400 45 HOH HOH . H 7 HOH A 101 401 120 HOH HOH . H 7 HOH A 102 402 63 HOH HOH . H 7 HOH A 103 403 92 HOH HOH . H 7 HOH A 104 404 25 HOH HOH . H 7 HOH A 105 405 129 HOH HOH . H 7 HOH A 106 406 22 HOH HOH . H 7 HOH A 107 407 28 HOH HOH . H 7 HOH A 108 408 9 HOH HOH . H 7 HOH A 109 409 83 HOH HOH . H 7 HOH A 110 410 57 HOH HOH . H 7 HOH A 111 411 68 HOH HOH . H 7 HOH A 112 412 127 HOH HOH . H 7 HOH A 113 413 88 HOH HOH . H 7 HOH A 114 414 26 HOH HOH . H 7 HOH A 115 415 82 HOH HOH . H 7 HOH A 116 416 49 HOH HOH . H 7 HOH A 117 417 112 HOH HOH . H 7 HOH A 118 418 98 HOH HOH . H 7 HOH A 119 419 89 HOH HOH . H 7 HOH A 120 420 55 HOH HOH . H 7 HOH A 121 421 121 HOH HOH . H 7 HOH A 122 422 113 HOH HOH . H 7 HOH A 123 423 99 HOH HOH . H 7 HOH A 124 424 125 HOH HOH . H 7 HOH A 125 425 123 HOH HOH . H 7 HOH A 126 426 134 HOH HOH . H 7 HOH A 127 427 105 HOH HOH . H 7 HOH A 128 428 72 HOH HOH . H 7 HOH A 129 429 100 HOH HOH . H 7 HOH A 130 430 104 HOH HOH . H 7 HOH A 131 431 101 HOH HOH . H 7 HOH A 132 432 97 HOH HOH . H 7 HOH A 133 433 76 HOH HOH . H 7 HOH A 134 434 94 HOH HOH . H 7 HOH A 135 435 122 HOH HOH . H 7 HOH A 136 436 23 HOH HOH . H 7 HOH A 137 437 64 HOH HOH . H 7 HOH A 138 438 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 4 20.544 0.675 15.628 1 47.57 ? O1 PG4 204 A 1 HETATM 2 C C1 PG4 . . . E 4 20.759 0.807 14.22 1 51.32 ? C1 PG4 204 A 1 HETATM 3 C C2 PG4 . . . E 4 21.193 -0.52 13.573 1 54.51 ? C2 PG4 204 A 1 HETATM 4 O O2 PG4 . . . E 4 20.116 -1.039 12.761 1 55.77 ? O2 PG4 204 A 1 HETATM 5 C C3 PG4 . . . E 4 20.288 -2.306 12.1 1 51.08 ? C3 PG4 204 A 1 HETATM 6 C C4 PG4 . . . E 4 19.004 -3.159 12.268 1 45.02 ? C4 PG4 204 A 1 HETATM 7 O O3 PG4 . . . E 4 18.84 -3.448 13.638 1 37.62 ? O3 PG4 204 A 1 HETATM 8 C C5 PG4 . . . E 4 17.783 -4.342 13.983 1 36.67 ? C5 PG4 204 A 1 HETATM 9 C C6 PG4 . . . E 4 17.909 -4.509 15.494 1 35.17 ? C6 PG4 204 A 1 HETATM 10 O O4 PG4 . . . E 4 19.151 -5.203 15.652 1 36.24 ? O4 PG4 204 A 1 HETATM 11 C C7 PG4 . . . E 4 19.303 -6.068 16.781 1 33.18 ? C7 PG4 204 A 1 HETATM 12 C C8 PG4 . . . E 4 20.623 -6.836 16.567 1 30.16 ? C8 PG4 204 A 1 HETATM 13 O O5 PG4 . . . E 4 21.791 -6.009 16.56 1 31.21 ? O5 PG4 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #